Gene

KWMTBOMO12353

Pre Gene Modal

BGIBMGA012390

Annotation

PREDICTED:_chondroitin_sulfate_synthase_1_[Bombyx_mori]

Location

Bomo_Chr21(+):932727-933604      View in EpiBrowser

Full name

Hexosyltransferase      

Location in the cell

Mitochondrial   Reliability : 1.464

CDS

ATGCCTCGAAGAAGTAGGTGGATGCACATGGTGACTGGGCTCGTGGCCGGCGTCGTGTTCGGAGTGTTTCTCAAGCTGTGTTTGAGGACTTCCTCGCGGACGAGCATAGAGGCTTGTCCGGAGTCGGCCCGCTCGTATGCGGACCCGGAACCGCTAGCCTTAATAGGTCTCAACCCGAACGAGACTGTTCATAATTCAAACAGAACTCTAGTGTTTGTCGGTGTGATGACGGCCGAACAATATTTGACGACGAGAGCGAGGGCAGTGTACGACACCTGGGCCCAGGACCTGCCGGGGCGTATCGCGTTTTTCAGTTCAGAAGTGTCTCGGGCCCCGGGTTTGCCCCTCGTGCCGCTGCGCAACGTAGACGACAGTTATCCTCCTCAGAAAAAATCTTTCCTCATGTTGTTGCACATGTACGAAAAGTATGGGGAGAAATTCGAGTGGTTCATGAGAGCGGACGATGATGTATACGTAAGAGGTGATAAATTAGAGGAATTCCTGCGTTCGGTGGACAGCCGCAAGCCTCAGTTCATAGGGCAAGCTGGTAGGGGAACCAACGATGAAAAAGATGTGCTAGCTTTGGACTATAATGAGAACTTCTGTATGGGTGGTCCTGGTGTACTGATTTCTCGTGAGACCCTGCGGAGAGTGGCCCCTCACGTGAAGTACTGCTTGAAGCACCTGTACTCCACTCACGAGGACGTGGAGCTGGGTCGCTGTGTCGCCAAGTTTGCCGGTGTATCCTGTACTTGGAGTTATGATGTGAGTATTGATCTTTCTTAA

Protein

MPRRSRWMHMVTGLVAGVVFGVFLKLCLRTSSRTSIEACPESARSYADPEPLALIGLNPNETVHNSNRTLVFVGVMTAEQYLTTRARAVYDTWAQDLPGRIAFFSSEVSRAPGLPLVPLRNVDDSYPPQKKSFLMLLHMYEKYGEKFEWFMRADDDVYVRGDKLEEFLRSVDSRKPQFIGQAGRGTNDEKDVLALDYNENFCMGGPGVLISRETLRRVAPHVKYCLKHLYSTHEDVELGRCVAKFAGVSCTWSYDVSIDLS

Similarity

Belongs to the chondroitin N-acetylgalactosaminyltransferase family.

Feature

chain  Hexosyltransferase

Uniprot

H9JS80   A0A2H1VS79   A0A0L7LPP3   A0A194R9H0   A0A194Q0Y3   A0A2A4JUH5   + More
A0A2W1BGU7   A0A1E1W9F5   A0A3S2NLT0   A0A2J7Q318   A0A1I8N876   A0A0M4F7Q7   A0A182J0V2   A0A3L8E2C7   A0A3F2Z4M4   A0A182MZU9   B0X8P8   A0A1S4FDT8   Q175Z7   A0A1A9ZID4   A0A1A9VRT9   A0A084VUT5   A0A182Q9N3   E9IAE1   A0A1A9W8P6   A0A336LQ72   A0A0Q9X210   A0A0L0C948   B3MZ25   A0A1I8PYK0   B4M3K3   A0A0Q9WN77   A0A034VQ09   B4NEC6   W8CCX4   A0A3Q0JGC1   B4JLJ5   A0A0K8UAW0   A0A0J7KJE6   B4L3W6   A0A0A1X398   B4PWP9   B3NTJ1   A0A3B0JF75   E0VDG3   A0A3B0JDY9   A0A182MEV0   B4R588   A0A182UBA5   A0A182RPA9   Q7Z1Z0   Q7KUZ9   A0A182W4Y1   A0A182SU58   A0A1B0D0U2   A0A182PDM9   B4IK91   A0A182Y4Y9   A0A182XNE3   A0A182FK38   A0A2M4BCY4   A0A0R3NZ53   A0A2M4BCY8   A0A2M4BCY7   B4GWH1   A0A182V1C0   A0A453YJK4   Q7QHY5   T1J359   B5DLQ0   A0A151ILV9   E2C9U3   A0A026VXM4   A0A1W4VG21   A0A3L8E3L7   V5GZW5   A0A224XFS5   A0A1B0CRF3   A0A0N0BCN7   A0A2S2Q8Q6   A0A1J1HT45   A0A1J1HRF4   F4WTX6   A0A195AUR8   A0A1B6K3F6   A0A154PEY4   A0A151JUT0   A0A158P0Y9   A0A151WW89   A0A0L7R6R2   A0A151J1R6   T1HKH9   W5JWW3   A0A1B6M1P9   E1ZW55   A0A1B6EH51   A0A0N7ZCA6   A0A087ZN64   A0A3R7PYD3  

EC Number

2.4.1.-

Pubmed

19121390    26227816    26354079    28756777    25315136    30249741    + More
17510324    24438588    21282665    17994087    26108605    18057021    25348373    24495485    25830018    17550304    20566863    12761549    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25244985    15632085    23185243    12364791    14747013    17210077    20798317    24508170    21719571    21347285    20920257    23761445   

EMBL

BABH01033102    ODYU01004138    SOQ43695.1    JTDY01000390    KOB77407.1    KQ460473    + More
KPJ14488.1    KQ459591    KPI97060.1    NWSH01000557    PCG75675.1    KZ150229    PZC72020.1    GDQN01007563    JAT83491.1    RSAL01000284    RVE42988.1    NEVH01019070    PNF22985.1    CP012528    ALC48275.1    QOIP01000001    RLU26682.1    JXJN01000737    JXJN01000738    DS232496    EDS42640.1    CH477391    EAT41961.1    ATLV01017013    KE525142    KFB41729.1    AXCN02002440    GL762003    EFZ22467.1    UFQT01000107    SSX20080.1    CH964239    KRF99571.1    JRES01000749    KNC28775.1    CH902632    EDV32869.2    CH940651    EDW65378.1    KRF82203.1    GAKP01013566    JAC45386.1    EDW82095.2    GAMC01002945    GAMC01002943    GAMC01002941    JAC03615.1    CH916370    EDW00448.1    GDHF01028545    GDHF01023372    JAI23769.1    JAI28942.1    LBMM01006711    KMQ90382.1    CH933810    EDW07244.2    GBXI01017355    GBXI01008976    GBXI01008799    JAC96936.1    JAD05316.1    JAD05493.1    CM000162    EDX01795.1    CH954180    EDV46995.1    OUUW01000003    SPP78862.1    DS235075    EEB11419.1    SPP78863.1    AXCM01001757    CM000366    EDX17989.1    AY241926    AAO85275.1    AE014298    AAS65341.2    AHN59750.1    AJVK01010068    AJVK01010069    AJVK01010070    AJVK01010071    AJVK01010072    CH480852    EDW51483.1    GGFJ01001764    MBW50905.1    CH379063    KRT06305.1    GGFJ01001765    MBW50906.1    GGFJ01001763    MBW50904.1    CH479194    EDW27055.1    APCN01004786    AAAB01008811    EAA04965.5    JH431820    EDY72452.2    KQ977086    KYN05859.1    GL453902    EFN75280.1    KK107602    EZA48558.1    RLU27340.1    GALX01000989    JAB67477.1    GFTR01005101    JAW11325.1    AJWK01024711    AJWK01024712    AJWK01024713    KQ435896    KOX69281.1    GGMS01004920    MBY74123.1    CVRI01000020    CRK90556.1    CRK90555.1    GL888345    EGI62333.1    KQ976738    KYM75765.1    GECU01001731    JAT05976.1    KQ434890    KZC10413.1    KQ981732    KYN36557.1    ADTU01005907    ADTU01005908    ADTU01005909    KQ982691    KYQ52153.1    KQ414646    KOC66565.1    KQ980514    KYN15733.1    ACPB03002001    ACPB03002002    ADMH02000142    ETN67624.1    GEBQ01010132    JAT29845.1    GL434776    EFN74564.1    GEDC01000030    JAS37268.1    GDRN01070255    JAI63912.1    QCYY01003444    ROT63405.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000218220    UP000283053    + More
UP000235965    UP000095301    UP000092553    UP000075880    UP000279307    UP000092460    UP000075884    UP000002320    UP000008820    UP000092445    UP000078200    UP000030765    UP000075886    UP000091820    UP000007798    UP000037069    UP000007801    UP000095300    UP000008792    UP000079169    UP000001070    UP000036403    UP000009192    UP000002282    UP000008711    UP000268350    UP000009046    UP000075883    UP000000304    UP000075902    UP000075900    UP000000803    UP000075920    UP000075901    UP000092462    UP000075885    UP000001292    UP000076408    UP000076407    UP000069272    UP000001819    UP000008744    UP000075903    UP000075840    UP000007062    UP000078542    UP000008237    UP000053097    UP000192221    UP000092461    UP000053105    UP000183832    UP000007755    UP000078540    UP000076502    UP000078541    UP000005205    UP000075809    UP000053825    UP000078492    UP000015103    UP000000673    UP000000311    UP000005203    UP000283509   

PRIDE

H9JS80    Q7Z1Z0    Q7KUZ9   

Pfam

PF02434   Fringe        + More
PF05679   CHGN
PF00790   VHS
PF02883   Alpha_adaptinC2
PF18308   GGA_N-GAT
PF03127   GAT

Interpro

IPR003378   Fringe-like        + More
IPR029044   Nucleotide-diphossugar_trans       
IPR008428   Chond_GalNAc       
IPR002014   VHS_dom       
IPR004152   GAT_dom       
IPR008153   GAE_dom       
IPR008942   ENTH_VHS       
IPR008152   Clathrin_a/b/g-adaptin_app_Ig       
IPR038425   GAT_sf       
IPR013041   Clathrin_app_Ig-like_sf       
IPR041198   GGA_N-GAT       

SUPFAM

SSF53448   SSF53448        + More
SSF48464   SSF48464       
SSF49348   SSF49348       

Gene 3D

3.90.550.10     1.20.58.160     1.25.40.90    

ProteinModelPortal

H9JS80   A0A2H1VS79   A0A0L7LPP3   A0A194R9H0   A0A194Q0Y3   A0A2A4JUH5   + More
A0A2W1BGU7   A0A1E1W9F5   A0A3S2NLT0   A0A2J7Q318   A0A1I8N876   A0A0M4F7Q7   A0A182J0V2   A0A3L8E2C7   A0A3F2Z4M4   A0A182MZU9   B0X8P8   A0A1S4FDT8   Q175Z7   A0A1A9ZID4   A0A1A9VRT9   A0A084VUT5   A0A182Q9N3   E9IAE1   A0A1A9W8P6   A0A336LQ72   A0A0Q9X210   A0A0L0C948   B3MZ25   A0A1I8PYK0   B4M3K3   A0A0Q9WN77   A0A034VQ09   B4NEC6   W8CCX4   A0A3Q0JGC1   B4JLJ5   A0A0K8UAW0   A0A0J7KJE6   B4L3W6   A0A0A1X398   B4PWP9   B3NTJ1   A0A3B0JF75   E0VDG3   A0A3B0JDY9   A0A182MEV0   B4R588   A0A182UBA5   A0A182RPA9   Q7Z1Z0   Q7KUZ9   A0A182W4Y1   A0A182SU58   A0A1B0D0U2   A0A182PDM9   B4IK91   A0A182Y4Y9   A0A182XNE3   A0A182FK38   A0A2M4BCY4   A0A0R3NZ53   A0A2M4BCY8   A0A2M4BCY7   B4GWH1   A0A182V1C0   A0A453YJK4   Q7QHY5   T1J359   B5DLQ0   A0A151ILV9   E2C9U3   A0A026VXM4   A0A1W4VG21   A0A3L8E3L7   V5GZW5   A0A224XFS5   A0A1B0CRF3   A0A0N0BCN7   A0A2S2Q8Q6   A0A1J1HT45   A0A1J1HRF4   F4WTX6   A0A195AUR8   A0A1B6K3F6   A0A154PEY4   A0A151JUT0   A0A158P0Y9   A0A151WW89   A0A0L7R6R2   A0A151J1R6   T1HKH9   W5JWW3   A0A1B6M1P9   E1ZW55   A0A1B6EH51   A0A0N7ZCA6   A0A087ZN64   A0A3R7PYD3  

KEGG

101736840    K13499 chondroitin sulfate synthase [EC:2.4.1.175 2.4.1.226] | (RefSeq) chondroitin sulfate synthase

GO

GO:0016757   GO:0016020   GO:0016021   GO:0032580   GO:0008376   GO:0016740   GO:0006886   GO:0016192   GO:0030206   GO:0008375   GO:0015020   GO:0008270   GO:0005509   GO:0005524   GO:0003909   GO:0051103   GO:0000049   GO:0005975   GO:0004553  

Subcellular location

  

Length:

261

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

17.20475

Exp number, first 60 AAs:

17.19479

Total prob of N-in:

0.79239

POSSIBLE N-term signal

sequence

inside

1  -  6

TMhelix

7  -  24

outside

25  -  261

 

 

Pi

88.8103

Theta

170.243501

Tajima's D

-1.529872

CLR

821.069999

CSRT

0.0547972601369932

Interpretation

Possibly Positive selection