Silkworm Genome Informatics Database

Gene

KWMTBOMO12345 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012387

Annotation

PREDICTED:_poly(U)-binding-splicing_factor_half_pint_[Bombyx_mori]

Location

Bomo_Chr21(+):690237-697407 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.125

CDS

ATGGATATGTTGCAGGGCGGCACGATGCAGCCTCCCCTACCGGCCGTACCACTGCTGACCACACTGGTCCCCGCCGCGGCCCCCGCAGCCCCCGCCCCCGCTCCTGCGGCGCCGGCTGCCACGCGCCACGACCAATGTTTCGTCGCCCCCATCTACGACTTCAAACAGCAAGGAGACGTATTTACGGGGCCAGGAGCGAAATGCGCAACACTGCCGGCCATCCTGGGCGGCTCGCTGCCGCGGCTGTCGTCGGAACAAGCGGACGCCGTGGCACGCGCTAAGAAATACGCCATGGAGCAAAGCATCAAAATGGTGCTCATGAAGCAAACCCTCGCGCACCAGCAGCAGCAGATGGCCTCGCAGCGCACGCAGGTGCAGCGGCAGCAGGCCCTCGCGCTCATGTGCAGGGTGTACGTGGGTTCGATATCCTTTGAATTGAAGGAGGACACCATCCGACAAGCGTTCCTGCCGTTCGGGCCGATCAAGTCCATCAACATGTCCTGGGACCCCGTCACGCAGAAGCACAAGGGGTTCGCGTTCGTGGAGTACGAGATACCGGAGGCCGCGCAGCTGTCGCTCGAACAGATGAACGGCGTCATGCTGGGAGGAAGGAACATTAAAGTCGTCGGGCGACCTTCCAACATGCCTCAGGCGCAGGCAGTCATTGATGAGATTCAAGAGGAAGCTAAACAGTTCAATCGGATATACGTCGCCTCCATACACCCGGAATTAACTGAGGACGACATCAAGAACGTGTTCGAAGCATTTGGACCGATCACATATTGCAAACTGGCTTACGGCACCTCCCAACACAAGCACAAGGGCTACGGGTTCATCGAGTACGCCACGCTGCCCGCGGCGCTCGAGGCCATAGCTTCCATGAACCTGTTCGACCTGGGCGGGCAGTACCTGCGGGTGGGGCGCGCCATCACGCCGCCCAACGCGCTGGCCGGGCCGCCGCAGCCGTCCGCGCTGCCCACCGCCGCCGCCGTGGCCGCCGCCGCCGCCACCGCCAAGATCCAGGCCATGGACGCCGTCGCCTCCAACGCCGTCGCGCTCGGCCTCACCAAGCTCAACGCGCTCGGCGTGCCGCCCGCCGCCGCGCTGCCCACCCTCGCCGCCGCGCTGCCCGCCGCCATCCCGGCCGTGCTGCCCGCAGCCTTACCTGGAGTGATCCCGGCGGCCCTGCCCGGAGTACTGCCGGCTGCCATCCCTCCTCCGGGCGTGGTAATCCCTCCCGCTCCACGGGTCGGCCCCCTTCCCGCCGACCTACCTCCCCCCACCCCTGCGCCGCCTCCCCCCGCACCGGCCGCACCCCCCACGCTCACGGAAGCGGAAGGACAGCAACAAGCTGCCTTACAGCAGAAGCTACTGGATGCGTCACCCGACACCTTGCAGCAGCAGGAGTCCCTTTCAATATCTGGTCAATCAGCGCGGCACCTCGTCATGCAGCGGCTAATGCGGCGTCGAGCCTCCCGCACCGTGCTGCTGTGCAACATGGTGTCGGCTGACGAGGTGGACGAGGCGCTACATCACGAAATCCAGGAGGAATGCTCGAAGTGGGGCAGTGTGGAGCGGCTCGTGATCTACAACGAGCGACAGAACGAAGACGACGACCCCTCGCACGCTAATGTTAAGATCTTTGTACAGTTCGCTGAACCTGAAGAGGCGAGTGCGACGGCGGGCGCGCTCAACGGGCGGTACTTCGGCGGGCGCACCGTGCGCGCCGCGCTCTACGACCAGGACCTGTTCGACCACGGAGACCTCTCCGGGTAG

Protein

MDMLQGGTMQPPLPAVPLLTTLVPAAAPAAPAPAPAAPAATRHDQCFVAPIYDFKQQGDVFTGPGAKCATLPAILGGSLPRLSSEQADAVARAKKYAMEQSIKMVLMKQTLAHQQQQMASQRTQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLSLEQMNGVMLGGRNIKVVGRPSNMPQAQAVIDEIQEEAKQFNRIYVASIHPELTEDDIKNVFEAFGPITYCKLAYGTSQHKHKGYGFIEYATLPAALEAIASMNLFDLGGQYLRVGRAITPPNALAGPPQPSALPTAAAVAAAAATAKIQAMDAVASNAVALGLTKLNALGVPPAAALPTLAAALPAAIPAVLPAALPGVIPAALPGVLPAAIPPPGVVIPPAPRVGPLPADLPPPTPAPPPPAPAAPPTLTEAEGQQQAALQQKLLDASPDTLQQQESLSISGQSARHLVMQRLMRRRASRTVLLCNMVSADEVDEALHHEIQEECSKWGSVERLVIYNERQNEDDDPSHANVKIFVQFAEPEEASATAGALNGRYFGGRTVRAALYDQDLFDHGDLSG

Uniprot

NA

ProteinModelPortal

NA

PDB

3UWT E-value=7.45626e-78, Score=741

KEGG

101736317 K12838 poly(U)-binding-splicing factor PUF60 | (RefSeq) poly(U)-binding-splicing factor half pint

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000166 GO:0003676 GO:0020037 GO:0005509 GO:0005524 GO:0003909 GO:0051103 GO:0000049 GO:0005975 GO:0004553

SignalP

Position: 1 - 29, Likelihood: 0.556962

Length:

591

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.35078

Exp number, first 60 AAs:

0.13322

Total prob of N-in:

0.00930

outside

1 - 591

Pi

244.403614

Theta

188.546689

Tajima's D

0.430269

CLR

1.01462

CSRT

0.486925653717314

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics