SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12334
Pre Gene Modal
BGIBMGA009183
Annotation
PREDICTED:_SOSS_complex_subunit_B_homolog_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 2.085
 

Sequence

CDS
ATGAAAAACATAAACGCAGTATTTATAGTGTTGGATGTAGGTCCGCCGACATTGACGAAGGAGGCTCGGGAAGTGCGCACGCTGCGGGTAGCTGACGCGACCGCCTGCGTCAATCTGTCGGTGTGGGACGAGCCGGGTGCCTTGCTGCAGCCCGGGGACATCGTGCGTCTCACGCGGGGCTACGCCTCACTGTGGCGGGCGGCACTCACCCTCTACTCTGGCAAGTCTGGAGACATACAGAAGGTTGGAGAGTTTTGTATGTTATTCAATGAGCAGGTAAACATGAGTGAGCCACAAGCTACTCCTCCCGCACCACCCGCTCCTCCCTCGGCTCCAGCTCGCAATCAGCAGTCGTCTGCTCCGACCACACAACACAACAACAAGTCTGAACGCTTCACACCTTCAGCTACTGAACATGGCAAGCATGCTCACAAGACATACGTAAGAGGCCGAGGTCACCAGCGAGGCAACAATAGGAGATAG
Protein
MKNINAVFIVLDVGPPTLTKEAREVRTLRVADATACVNLSVWDEPGALLQPGDIVRLTRGYASLWRAALTLYSGKSGDIQKVGEFCMLFNEQVNMSEPQATPPAPPAPPSAPARNQQSSAPTTQHNNKSERFTPSATEHGKHAHKTYVRGRGHQRGNNRR

Summary

Similarity
Belongs to the peptidase C1 family.
Pfam
PF00112   Peptidase_C1
Interpro
IPR012340   NA-bd_OB-fold        + More
IPR000668   Peptidase_C1A_C       
IPR038765   Papain-like_cys_pep_sf       
IPR039417   Peptidase_C1A_papain-like       
IPR025660   Pept_his_AS       
SUPFAM
SSF50249   SSF50249        + More
SSF54001   SSF54001       
PDB
5D8F     E-value=1.25925e-30,     Score=326

Ontologies

Topology

Length:
160
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00219
Exp number, first 60 AAs:
0.00153
Total prob of N-in:
0.29469
outside
1  -  160
 
 

Population Genetic Test Statistics

Pi
22.622836
Theta
17.025336
Tajima's D
0.859154
CLR
0
CSRT
0.632418379081046
Interpretation
Uncertain
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