Gene

KWMTBOMO12329

Pre Gene Modal

BGIBMGA009172

Annotation

PREDICTED:_neurogenic_locus_notch_homolog_protein_3-like_[Amyelois_transitella]

Location

Bomo_Chr20(-):12234914-12242389      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.366

CDS

ATGGGTCGAAAAAGATCAAAGCGCAATAGTTACGAGCCGGCGGCAGTACCGTGCGGGGCGAGCCCGTGCGACCACGGCGGCTCGTGCGTGCACACAGAGCAGGGCGAGGTCTGCGAGTGCGCGGGCCCGTGGGGCGGAGCGCACTGCACGCTGTACGTGGGACACGACCACGCCTGCCGCAACAAGTGTCAACACCCTGCTCTGTGCGTTTGGGGACCAGACACTAGTGCAACAGAAGCTGGATCCACACACTGTGTATGTCCGGGAGGCGAGCGATGCTTGGAGCGGCCCGAGGTAGCGGGCGCGGGAGCGGTGGACAGCGCGGGAGCGGGTGCGGGAGCGGGCGCGTGGGCGGGAGCGATACTAGCGCTTATAGCGTTAGCTGGTGCTGTATTTGCTGCCCTATTCGTTCTGCACAGGAGAAGGCACGGCGCGTTCGTGCACGCCCGGCTGGCGGACAACGTCGAGATCAACAACCCCATGTACCTGGCCGGGGAGGACGAGCCCGAGGGCGCGCACACGAACGGCGGCAAGCACTTCGCCAACCCCGTATACGAGAGTGTGTACGCTCCTCAACAGAATCCGACCGAGGAACAGGACAACCTGCTGTCCGCCGCAGACAGCCCGGCGCCGCCAGAGAGAGTCGCGCTCTTGTAG

Protein

MGRKRSKRNSYEPAAVPCGASPCDHGGSCVHTEQGEVCECAGPWGGAHCTLYVGHDHACRNKCQHPALCVWGPDTSATEAGSTHCVCPGGERCLERPEVAGAGAVDSAGAGAGAGAWAGAILALIALAGAVFAALFVLHRRRHGAFVHARLADNVEINNPMYLAGEDEPEGAHTNGGKHFANPVYESVYAPQQNPTEEQDNLLSAADSPAPPERVALL

Uniprot

A0A3S2L012   A0A194QC02   A0A336MF06   Q173P8   A0A182Q5W8   A0A182RFE9   + More
A0A182UJK7   A0A182H1E0   A0A182JR28   A0A182Y1K2   A0A182VGN9   A0A1S4HA77   A0A182WZR1   A0A182HQA5   Q7PV66   A0A182MQ24   A0A182MYS6   A0A182WF05   B0WAR6   A0A182J8Q6   W8ABN8   W8AKS1   A0A1B0CM24   A0A034UZW5   A0A0K8UXD4   A0A0Q9W449   B4LL78   A0A034V457   A0A1Y1KQK0   B4J5U6   A0A1Y1KPE0   E0VUC7   A0A0P5ZX21   A0A0P5WJU6   A0A0P6BZW9   A0A0P5D1D3   A0A164Q3Q6   D6WSD9  

Pubmed

26354079    17510324    26483478    25244985    12364791    24495485    + More
25348373    17994087    28004739    20566863    18362917    19820115   

EMBL

RSAL01000327    RVE42512.1    KQ459193    KPJ02992.1    UFQT01000917    SSX27981.1    + More
CH477418    EAT41289.1    AXCN02001027    JXUM01023022    JXUM01023023    JXUM01023024    JXUM01023025    JXUM01023026    KQ560649    KXJ81450.1    AAAB01008986    APCN01003303    EAA00393.5    AXCM01000340    DS231875    EDS41782.1    GAMC01021260    JAB85295.1    GAMC01021262    JAB85293.1    AJWK01018073    AJWK01018074    AJWK01018075    AJWK01018076    AJWK01018077    AJWK01018078    GAKP01022406    JAC36546.1    GDHF01021000    JAI31314.1    CH940648    KRF79634.1    EDW60815.2    GAKP01022407    JAC36545.1    GEZM01079393    JAV62450.1    CH916367    EDW00789.1    GEZM01079395    JAV62448.1    DS235785    EEB16983.1    GDIP01038529    JAM65186.1    GDIP01085272    GDIP01085271    JAM18443.1    GDIP01008066    JAM95649.1    GDIP01162559    JAJ60843.1    LRGB01002485    KZS07405.1    KQ971352    EFA06629.2   

Proteomes

UP000283053    UP000053268    UP000008820    UP000075886    UP000075900    UP000075902    + More
UP000069940    UP000249989    UP000075881    UP000076408    UP000075903    UP000076407    UP000075840    UP000007062    UP000075883    UP000075884    UP000075920    UP000002320    UP000075880    UP000092461    UP000008792    UP000001070    UP000009046    UP000076858    UP000007266   

PRIDE

Q7PV66   

Pfam

PF05585   DUF1758        + More
PF05380   Peptidase_A17
PF03564   DUF1759
PF00008   EGF
PF00057   Ldl_recept_a
PF07645   EGF_CA
PF00058   Ldl_recept_b
PF16472   DUF5050

Interpro

IPR008042   Retrotrans_Pao        + More
IPR000253   FHA_dom       
IPR000742   EGF-like_dom       
IPR011042   6-blade_b-propeller_TolB-like       
IPR013032   EGF-like_CS       
IPR005312   DUF1759       
IPR008737   Peptidase_asp_put       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000033   LDLR_classB_rpt       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR023415   LDLR_class-A_CS       
IPR018097   EGF_Ca-bd_CS       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR001881   EGF-like_Ca-bd_dom       
IPR036055   LDL_receptor-like_sf       
IPR002172   LDrepeatLR_classA_rpt       
IPR032485   DUF5050       
IPR007527   Znf_SWIM       

SUPFAM

SSF57424   SSF57424        + More
SSF57184   SSF57184       

Gene 3D

2.120.10.30     2.40.70.10     4.10.400.10    

CDD

cd00112  LDLa

ProteinModelPortal

A0A3S2L012   A0A194QC02   A0A336MF06   Q173P8   A0A182Q5W8   A0A182RFE9   + More
A0A182UJK7   A0A182H1E0   A0A182JR28   A0A182Y1K2   A0A182VGN9   A0A1S4HA77   A0A182WZR1   A0A182HQA5   Q7PV66   A0A182MQ24   A0A182MYS6   A0A182WF05   B0WAR6   A0A182J8Q6   W8ABN8   W8AKS1   A0A1B0CM24   A0A034UZW5   A0A0K8UXD4   A0A0Q9W449   B4LL78   A0A034V457   A0A1Y1KQK0   B4J5U6   A0A1Y1KPE0   E0VUC7   A0A0P5ZX21   A0A0P5WJU6   A0A0P6BZW9   A0A0P5D1D3   A0A164Q3Q6   D6WSD9  

PDB

3H5C     E-value=0.00899559,     Score=89

KEGG

101746727    no KO assigned | (RefSeq) liprin-alpha-1

GO

GO:0016021   GO:0005509   GO:0008270   GO:0005515   GO:0006281   GO:0006310   GO:0003677   GO:0005524   GO:0003909   GO:0051103   GO:0000049   GO:0005975   GO:0004553  

Length:

218

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.83555

Exp number, first 60 AAs:

0.00276

Total prob of N-in:

0.49336

outside

1  -  115

TMhelix

116  -  138

inside

139  -  218

 

 

Pi

15.983855

Theta

14.503651

Tajima's D

-0.679617

CLR

1.578325

CSRT

0.204039798010099

Interpretation

Uncertain