SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12327  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009173
Annotation
PREDICTED:_non-canonical_poly(A)_RNA_polymerase_PAPD5-like_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.352 Mitochondrial   Reliability : 1.094
 

Sequence

CDS
ATGGATCCCGCCGTCGCGTGGTATCAGCCCGAGCAGGAAGGACCCGCGAAGCGCCTGTGGCTTCGTATTTGGGATACTCAAAGTGAATTAGACAAAATGAACTTGAAAAACATAGAAAACGCAAACCCTAATGTGAACAAAGCACAGGACTTTATACCAATAAATGACGTGAATGGTGAAAATAGGAATAATAATTATTTTAATCCCGCGCGGAGGAAAGTTAACGACAATCGAGCCTCAACTTTTAACCTGAATAAAAATCACGATGCTCTCATAGGAGAATACGGAGGCTGTCCGTGGCGAATACCTAATTATGCGTACAAGCCGGGAGTGTTGGGGCTCCACGAAGAGATCGATCACTTCTACATGTACATGTCGCCGACGGAGACGGAGCACCTGGTCCGCTCGACCGTGGTGAACAGAATCCGCGCCGCCATCCTGTCGCTCTGGCCCCAGGCCCGGGTCGAGGTGTTCGGTTCATTCCGTACTGGACTGTACCTGCCGACCAGCGATATAGACCTAGTCGTTATTGGTGAGTGTCACGGAACGTAG
Protein
MDPAVAWYQPEQEGPAKRLWLRIWDTQSELDKMNLKNIENANPNVNKAQDFIPINDVNGENRNNNYFNPARRKVNDNRASTFNLNKNHDALIGEYGGCPWRIPNYAYKPGVLGLHEEIDHFYMYMSPTETEHLVRSTVVNRIRAAILSLWPQARVEVFGSFRTGLYLPTSDIDLVVIGECHGT

Summary

EMBL
JTDY01001400    KOB73971.1    KZ149926    PZC77587.1    ODYU01001931    SOQ38818.1    + More
GAIX01003865    JAA88695.1    KQ459193    KPJ02994.1    AGBW02008964    OWR52055.1    KZ288327    PBC27960.1    KQ769895    OAD52772.1    KQ434808    KZC06168.1    GEZM01013419    JAV92578.1    KQ414599    KOC69755.1    NEVH01013550    PNF28796.1    KQ971352    EFA06387.1    PNF28797.1    PNF28799.1    GALX01006924    JAB61542.1    NNAY01000415    OXU28559.1    GBYB01013099    JAG82866.1    GDRN01101320    JAI58403.1    GEZM01013420    JAV92577.1    GANO01004183    JAB55688.1    GECZ01028201    JAS41568.1    GFDF01003260    JAV10824.1    KK852611    KDR20267.1    GEDV01004707    JAP83850.1    GACK01001811    JAA63223.1    DS235357    EEB15184.1    GEFH01004901    JAP63680.1    GBBK01002237    JAC22245.1    GFAC01002136    JAT97052.1    GEGO01002549    JAR92855.1    JH431850    GEFM01004409    JAP71387.1    CVRI01000036    CRK92967.1    GEDC01029350    JAS07948.1    GEDC01023398    JAS13900.1    GGLE01006217    MBY10343.1    KB631817    ERL86526.1    APGK01059362    APGK01059363    KB741293    ENN70220.1    KB203796    ESO83032.1    HACG01050357    CEK97222.1    GBGD01000903    JAC87986.1    GFWV01008492    MAA33221.1    ACPB03005112    NCKU01000373    NCKU01000367    RWS15748.1    RWS15779.1    GDHC01021584    JAP97044.1    GFJQ02006505    JAW00465.1    GDIP01171088    JAJ52314.1    GBHO01043863    JAF99740.1    NEDP02000756    OWF55137.1    NCKV01000078    RWS31730.1    RQTK01000001    RUS92192.1    GGFM01000861    MBW21612.1    GBHO01043869    GBHO01034799    GBHO01003149    JAF99734.1    JAG08805.1    JAG40455.1    LJIJ01000058    ODN03978.1    GDIP01078399    JAM25316.1    GDIP01093148    GDIP01080955    GDIP01054369    LRGB01001411    JAM49346.1    KZS11989.1    GDIP01232942    JAI90459.1    GDIP01184143    JAJ39259.1    GDIP01043016    JAM60699.1    GDIQ01050873    JAN43864.1    GDIP01107647    JAL96067.1    GDIQ01011368    JAN83369.1   
Pfam
PF01909   NTP_transf_2        + More
PF03828   PAP_assoc
Interpro
IPR002058   PAP_assoc        + More
IPR002934   Polymerase_NTP_transf_dom       
IPR040136   TENT4B       
IPR040137   TENT4A       
PDB
3NYB     E-value=1.61785e-11,     Score=163

Ontologies

Topology

Length:
183
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00363
Exp number, first 60 AAs:
0
Total prob of N-in:
0.07990
outside
1  -  183
 
 

Population Genetic Test Statistics

Pi
2.819918
Theta
18.916379
Tajima's D
-0.870682
CLR
0.942875
CSRT
0.16329183540823
Interpretation
Uncertain
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