Gene

KWMTBOMO12320

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr20(+):12044284-12044891      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.555

CDS

ATGAGAACCCTTATCTTCTCCATATTCTTGTACGCTTCTGAGACGTGGACCCTCAAGACCCGTAACCGATTGAGAATTGACGCATTTGAAACATGGTGCTGGCGCAAAATGTTGGGCGTATCATGGAGGGAGCGAAGAGCAAATGTGTCAATTCTCGAGGAGCTAAACGTCAAGACCCGTCTATCTACAATCTGTATGCAGCGTCTCCTTAAGTACTTCGGACGCGTGGCCCGACAAAATCCTGAGAACTTGGAAAAATTAATAGTTGTAGGTCACGTGGAAGGAAAGAGAAGTCGAGGAAGATTGCCAACCAGGTGGACGGACATTATCAAGGAGGCCACAAACACCAGCGTCCCGGGCGCCATTAAGCAGGCCGAATGCAGGCAACATTGGAGGAAGTTGGTGCAAAAACTGGACCAAGGTGGTCACGACCGTTAG

Protein

MRTLIFSIFLYASETWTLKTRNRLRIDAFETWCWRKMLGVSWRERRANVSILEELNVKTRLSTICMQRLLKYFGRVARQNPENLEKLIVVGHVEGKRSRGRLPTRWTDIIKEATNTSVPGAIKQAECRQHWRKLVQKLDQGGHDR

Uniprot

D7F174   A0A3S2L0R7   A0A2H1V742   A0A2H1VNK5   D7F163   D7F161   + More
A0A2H1VU13   D7F162   D7F175   D7F167   D7F172   D7F168   D5LB39   A0A2W1BGD9   A0A2G8LJK7   A0A2G8K327   A0A2G8JE23   A0A2G8KTJ4   A0A2G8K796   W4YPU3   A0A2G8K183   A0A2G8JVI4   A0A085LZ21   A0A2G8JVA1   A0A2G8L6P4   A0A3S3RLW1   A0A3S3NR17   H2YWZ6   A0A2H1W7G4   X1D4L4   H2YWZ5   A0A085NA37   W4Y921   A0A194PHS9   W4ZJA4   W5NMM5   A0A3Q1LT03   A0A3Q1MCX3   A0A3Q1LLH3   A0A3Q1M4E7   W4XFH1   A0A3S1AZH6   A0A2A4J795   A0A3Q1NB85   A0A3S1HJZ0   W5MM77   A0A3Q1LR75   A0A3S0ZE77   A0A3S3P648   O97916   W5NIE2   A0A0B7BSZ9   A0A3Q1M7G0   A0A0B7BT80   A0A0B7BUR9   A0A3Q1MZC9   W4YNG7   F6R5D0   A0A3Q1MMS2   A0A3Q1MNS1   A0A3Q1M4J9   A0A3Q1MHE1   J9LZK0   W4Z5A1   X1WK45   A0A2W1BSS7   A0A3Q1NE26   A0A3Q1MXT5   A0A3Q1MIT2   A0A3S0ZVZ5   A0A3Q1M2T8   A0A3Q1LGI2   A0A3Q1MDY8   W5NLK6   A0A0B7BVD9   A0A067QUH9   A0A067RQM5   A0A0B7BSB6   A0A0B7BVD3   A0A2S2QAF2   A0A2S2NMQ2   X1XC23   A0A3Q1MGA3   A0A3Q1MVY4   A0A3Q1MQ02   D5LB38   A0A3Q1N3Y9   A0A3Q1MJZ2   A0A3Q1LFQ0   A0A3Q1NBK7  

Pubmed

20470440    28756777    29023486    24929829    24624126    26354079    + More
19393038    10555285    24845553   

EMBL

FJ265559    ADI61827.1    RSAL01000289    RVE42931.1    ODYU01001007    SOQ36619.1    + More
ODYU01003523    SOQ42419.1    FJ265548    ADI61816.1    FJ265546    ADI61814.1    ODYU01004401    SOQ44236.1    FJ265547    ADI61815.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    FJ265557    ADI61825.1    FJ265553    ADI61821.1    GU815090    ADF18553.1    KZ150203    PZC72267.1    MRZV01000056    PIK60437.1    MRZV01000940    PIK42365.1    MRZV01002322    PIK33998.1    MRZV01000378    PIK51329.1    MRZV01000817    PIK43880.1    AAGJ04055194    MRZV01000994    PIK41715.1    MRZV01001207    PIK39730.1    KL363256    KL367985    KFD50217.1    KFD59415.1    MRZV01001216    PIK39650.1    MRZV01000196    PIK55924.1    NCKU01008836    RWS01655.1    NCKU01012182    RWS00163.1    ODYU01006805    SOQ48998.1    BART01031562    GAH15691.1    KL363266    KL367526    KFD49675.1    KFD66333.1    AAGJ04161766    KQ459603    KPI92872.1    AAGJ04021158    AHAT01022938    AAGJ04075245    RQTK01000685    RUS76136.1    NWSH01002736    PCG67606.1    RQTK01000360    RUS81011.1    AHAT01015286    RQTK01000625    RUS76894.1    NCKU01004395    RWS06003.1    AJ132772    CAA10770.1    AHAT01009145    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    AAGJ04167631    ABLF02042206    AAGJ04128321    ABLF02024992    ABLF02024994    ABLF02025002    ABLF02043975    KZ149985    PZC75696.1    RQTK01000209    RUS84333.1    AHAT01012943    HACG01049255    CEK96120.1    KK852941    KDR13536.1    KK852482    KDR22935.1    HACG01049249    CEK96114.1    HACG01049245    CEK96110.1    GGMS01004979    MBY74182.1    GGMR01005851    MBY18470.1    ABLF02031909    GU815089    ADF18552.1   

Proteomes

UP000283053    UP000230750    UP000007110    UP000285301    UP000007875    UP000053268    + More
UP000018468    UP000009136    UP000271974    UP000218220    UP000007819    UP000027135   

PRIDE

D7F174    D7F163    D7F161    D7F162    D7F175    D7F167    + More
D7F172    D7F168    D5LB39    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF05699   Dimer_Tnp_hAT
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR002138   Pept_C14_p10       
IPR008906   HATC_C_dom       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF46689   SSF46689       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F174   A0A3S2L0R7   A0A2H1V742   A0A2H1VNK5   D7F163   D7F161   + More
A0A2H1VU13   D7F162   D7F175   D7F167   D7F172   D7F168   D5LB39   A0A2W1BGD9   A0A2G8LJK7   A0A2G8K327   A0A2G8JE23   A0A2G8KTJ4   A0A2G8K796   W4YPU3   A0A2G8K183   A0A2G8JVI4   A0A085LZ21   A0A2G8JVA1   A0A2G8L6P4   A0A3S3RLW1   A0A3S3NR17   H2YWZ6   A0A2H1W7G4   X1D4L4   H2YWZ5   A0A085NA37   W4Y921   A0A194PHS9   W4ZJA4   W5NMM5   A0A3Q1LT03   A0A3Q1MCX3   A0A3Q1LLH3   A0A3Q1M4E7   W4XFH1   A0A3S1AZH6   A0A2A4J795   A0A3Q1NB85   A0A3S1HJZ0   W5MM77   A0A3Q1LR75   A0A3S0ZE77   A0A3S3P648   O97916   W5NIE2   A0A0B7BSZ9   A0A3Q1M7G0   A0A0B7BT80   A0A0B7BUR9   A0A3Q1MZC9   W4YNG7   F6R5D0   A0A3Q1MMS2   A0A3Q1MNS1   A0A3Q1M4J9   A0A3Q1MHE1   J9LZK0   W4Z5A1   X1WK45   A0A2W1BSS7   A0A3Q1NE26   A0A3Q1MXT5   A0A3Q1MIT2   A0A3S0ZVZ5   A0A3Q1M2T8   A0A3Q1LGI2   A0A3Q1MDY8   W5NLK6   A0A0B7BVD9   A0A067QUH9   A0A067RQM5   A0A0B7BSB6   A0A0B7BVD3   A0A2S2QAF2   A0A2S2NMQ2   X1XC23   A0A3Q1MGA3   A0A3Q1MVY4   A0A3Q1MQ02   D5LB38   A0A3Q1N3Y9   A0A3Q1MJZ2   A0A3Q1LFQ0   A0A3Q1NBK7  

KEGG

101740752    no KO assigned | (RefSeq) aldo-keto reductase AKR2E4-like

GO

GO:0003964   GO:0004519   GO:0016021   GO:0004197   GO:0046983   GO:0003677  

SignalP

Position:   1 - 17,         Likelihood:  0.677229

 

 

Length:

145

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00352

Exp number, first 60 AAs:

0.00352

Total prob of N-in:

0.03704

outside

1  -  145

 

 

Pi

15.410272

Theta

14.985461

Tajima's D

0.085186

CLR

0

CSRT

0.401829908504575

Interpretation

Uncertain