SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12318
Pre Gene Modal
BGIBMGA009176
Annotation
PREDICTED:_uncharacterized_protein_LOC101738532_[Bombyx_mori]
Location
Bomo_Chr20(-):12005828-12036393      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.85
 

Sequence

CDS
ATGGGCAGCAGCACGACCTCGGACAAGACCATCAACACGAGCACTGATTCAGCGGCCACTGCCCTCACTTCCATCACGGGAACAGATGATTCCATGGACGCTGAGCCTGAACCTCCCGAGCTACCACACAACCCTCCAAGCCTCATCGACGCGGAACCTATCCAAAACCCTCCAAGCACCGCCCCGCCACATTACCACAGACCCCAAAATAGCTGTGACATCGACTCCCCTGCTTACACAAAACCTCAGTCGGCCACCGAGGTCCTAGACTCCCCAAGGCCAGGCCCAGCCCGTTTCATTTTTGACGTTCCACTTCCAGATCCTCGAAAAGCAGATAAAACGCGTAACAAAACCCAAGTGACACAGAGGAGAGGCAGTGAACCTCGCGTGAAAAAGAAAGAGAAAGAGTATTACAAGGACGAAGTGGCCAAGTTACGGAGACAGTTGGAAGGGACGGAAGTCTTTGCGACTAGCAGAAGAAGATCTTCGACGCACCAACATTCTGTTCCACCGCCGTCTTCTAGGAGACAGTCCACAGCAGCCCAGGTCCACGTCACAGCCAACCCGTTGGACTCAGCAGCTACCACCATCCCAGCCGGCAGGACCACCATCGTAGTCCAACAACCATCTCTGTCATTGGACTACGGAGGGTGCTCCACGTTCCTAGTTAGAGAAGGCGAAGATGGAAGGAGAAAAAGTAGGATCTGCACTGATCACCTGCAACAACTCCTTGACGTGACCAGCCAGTTCACGTCGGAAGACTTGCATGAGTTCGACAAGAGATACGGAAGTCCACATCACTCGAGATCCCAGTCAGTGAAGGCCCAAAGATCGAGAACGGGAGAACGACAGCTCCTTGGTCTGCCACAGCAGAGAGCCAGGGTGGCTTCCATGCCTAACACGGGAGTGGAAGAAGAATACTACAGGCTTCGACATTTCAGTATAACTGGTAAGGGCGTAGTGAACCGCGGTGACTCCTTGCGCTCCCGAAGGTCTCGTTCCAACACGTCGGTGGCCTCCAGCGCTTCTAGTACCGAGGTCGCAAAACGAGCCTCAGCGCCCTGCTCCTTGGCATCATCCAGGGACTCATCAGCCGGTCTCAGTTCCTACAGAGTGCTGGTGTTAGGAGGTCCTGGAGTCGGAAAGTCGAGTCTGGTGGGACAGTTCATGACTTCGGAATATCTTCATGCGTACGACACTAGCATAGATGACGAATCTGGCGAGAGATCTGTCTGCGTGCTACTTGCTGGAGAGGAATCCGAGATAACCTTTCTGGATTCGCCACCAGATCATGTAGTGTCCGAAGGTTGTGCCCACGGGTACTGCGTGGTTTACTCCACGGCAGACAGGAGCAGTTTCGTGGAAGCTGAGAGGAGATTGCAGGTTCTGTGGGCCGCTGGACACACCTCGCGCCGTGCTGTCATCCTGGTCGGAAATAAAGCAGATCTGGCGAGATCAAGGGTCGTACCTACTGATGAGGGCAAGAGCTTGGCTACATCTTACGACTGCAAGTTCATTGAGACGTCTGTCGGTATCAATCACAACGTGGACGAGCTGCTGGTCGGACTCCTCACTCAGATCCGACTCAAGCAACAGCACGCCGAGAAGGCCAAAAAACGCAGCGGCTCACGCAAGAACAGAAGCCGCGCCAGGTCTCCGATGGAGAGCGAGCAGCCCGCGCCAGCCCCGGCCTCCTCCTCCGCGGCCAGCACGCCCAGGAAGAGGACCAGACTCTCGGCCAGTGTCAAGGTCCGAGGTCTTCTGGGGCGCGTGTGGGCGCGTGACTCCAAGTCGAAGTCGTGCGAGAACCTGCATGTCCTCTAG
Protein
MGSSTTSDKTINTSTDSAATALTSITGTDDSMDAEPEPPELPHNPPSLIDAEPIQNPPSTAPPHYHRPQNSCDIDSPAYTKPQSATEVLDSPRPGPARFIFDVPLPDPRKADKTRNKTQVTQRRGSEPRVKKKEKEYYKDEVAKLRRQLEGTEVFATSRRRSSTHQHSVPPPSSRRQSTAAQVHVTANPLDSAATTIPAGRTTIVVQQPSLSLDYGGCSTFLVREGEDGRRKSRICTDHLQQLLDVTSQFTSEDLHEFDKRYGSPHHSRSQSVKAQRSRTGERQLLGLPQQRARVASMPNTGVEEEYYRLRHFSITGKGVVNRGDSLRSRRSRSNTSVASSASSTEVAKRASAPCSLASSRDSSAGLSSYRVLVLGGPGVGKSSLVGQFMTSEYLHAYDTSIDDESGERSVCVLLAGEESEITFLDSPPDHVVSEGCAHGYCVVYSTADRSSFVEAERRLQVLWAAGHTSRRAVILVGNKADLARSRVVPTDEGKSLATSYDCKFIETSVGINHNVDELLVGLLTQIRLKQQHAEKAKKRSGSRKNRSRARSPMESEQPAPAPASSSAASTPRKRTRLSASVKVRGLLGRVWARDSKSKSCENLHVL

Summary

Uniprot
A0A194QC17   A0A2W1BRA9   A0A0N1IDS1   A0A3S2P4I2   A0A2A4J429   A0A0L7L4G9   + More
A0A026WPL9   D6WQS8   E2BHB0   A0A158P2S2   A0A151X322   A0A3L8DYI7   A0A0A1XML5   A0A0J9U613   A1ZBJ6   A0A3Q0JCL9   A0A2M4CIR6  
Pubmed
26354079    28756777    26227816    24508170    18362917    19820115    + More
20798317    21347285    30249741    25830018    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867   
EMBL
KQ459193    KPJ03007.1    KZ149926    PZC77578.1    KQ461072    KPJ09851.1    + More
RSAL01000502    RVE41520.1    NWSH01003486    PCG66200.1    JTDY01003010    KOB70310.1    KK107138    EZA57923.1    KQ971354    EFA06026.2    GL448287    EFN84879.1    ADTU01007418    ADTU01007419    ADTU01007420    ADTU01007421    ADTU01007422    KQ982576    KYQ54650.1    QOIP01000002    RLU25497.1    GBXI01001708    JAD12584.1    CM002911    KMY95070.1    AE013599    AAM70848.2    GGFL01000610    MBW64788.1   
Proteomes
UP000053268    UP000053240    UP000283053    UP000218220    UP000037510    UP000053097    + More
UP000007266    UP000008237    UP000005205    UP000075809    UP000279307    UP000000803    UP000079169   
PRIDE
A1ZBJ6   
Pfam
PF00071   Ras        + More
PF04083   Abhydro_lipase
PF11179   DUF2967
Interpro
IPR006693   AB_hydrolase_lipase        + More
IPR001806   Small_GTPase       
IPR020849   Small_GTPase_Ras-type       
IPR027417   P-loop_NTPase       
IPR029058   AB_hydrolase       
IPR021349   DUF2967       
SUPFAM
SSF52540   SSF52540        + More
SSF53474   SSF53474       
Gene 3D
3.40.50.1820    
ProteinModelPortal
A0A194QC17   A0A2W1BRA9   A0A0N1IDS1   A0A3S2P4I2   A0A2A4J429   A0A0L7L4G9   + More
A0A026WPL9   D6WQS8   E2BHB0   A0A158P2S2   A0A151X322   A0A3L8DYI7   A0A0A1XML5   A0A0J9U613   A1ZBJ6   A0A3Q0JCL9   A0A2M4CIR6  
PDB
3Q7Q     E-value=7.08214e-24,     Score=276

Ontologies

KEGG
101738532    K07847 Rad and Gem related GTP binding protein 1 | (RefSeq) uncharacterized LOC101738532
GO
GO:0016020   GO:0005525   GO:0006629   GO:0007165   GO:0003924   GO:0005886   GO:0005246   GO:0098793   GO:0007615   GO:1901386   GO:0072375   GO:0007264   GO:0009898   GO:0016192   GO:0019538   GO:0030145   GO:0000049   GO:0005975   GO:0004553  

Topology

Length:
607
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00123
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00146
outside
1  -  607
 
 

Population Genetic Test Statistics

Pi
25.161658
Theta
24.444584
Tajima's D
-1.601586
CLR
0.896551
CSRT
0.0460476976151192
Interpretation
Uncertain
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