SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12317
Pre Gene Modal
BGIBMGA009178
Annotation
PREDICTED:_uncharacterized_protein_LOC106102902_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 2.303
 

Sequence

CDS
ATGTATCATCCGGCCAGAAAAAAGTTGATTGATTTTTATTTATCAATTGTTTTAATTATGAGCGTAACAAGGACCGAAGCTAGATCCTTTCAGATGACTGCAAATGCCAAAACGAACGACGATAATTTGGATAATAACTTAATTGATTTCGAAGAAGACAACACATTCAAATTCAACAAAAAGTACGGTATAACGTCGTGGCACGATGACGAATATTTCAATAAAAAAACACACAGATACACTATTGTTAATGACATTGGCGAAAAAATATTCGAAAGTAAAAATAAAGCAAAGAATATTAGAAATAACGATGCTACTACTACAGAAGATTACAGAGTGATCCCACTGGAATTAATTACTACAACTGAGAATACGTTGATAAGTATTATTGAAAGTACTACAGAACAAGATTTGAGTGTTATTCCTTTGTCCACAACCGCAAAAGTACCTAATATAACAATAACAGACTCAATAACATTACCCGTATCTACAGAGTATCCTGAAACTACAACTATTGAAAAAATAGAAATTATTGTACAAGAAAAAGATACCGCCCCAGAAATTTCGAAGGAAGTAGAAGTAGATCTCAACAATGAAACTACTAAATTTCCGTTTGAAACAACAAGTGAGGTTACATTGGAAAGTGATGAAGTTAATGTTTCAACTGAGAGCTTTGATGAAACGACGCTCATAGAACAAATATCGAAAGAAAATTACAACAATTCTAAAGCACTAACTGAAATTTATAAATCTACAGAAGATTCAGTGATTAATACTACAGAAGATACTAATTTTAATGTAACAGATATTCATTTTGAGCTTTTAAACACTACAAAATTGGAAATAAAAAAAACGAATGAAAGCAGAATAGATGAAAGTAGAGAAACCGATGCAGATGTACCAATATTTACAGAATTAGACGCCGAAGAAGAAATAGATGTTCCAGAGGATTATTATGATACTAAAGATGTTGTTCCTACTACGGCTCCAAGGACCGATGCGTTATCAGTTATATTTGGACTTGCAGGGAGCGTTGTGGAGAGTGTAGTAGAGACTGTAGCAGAAAGGGTTGTCCCGAAGAGCGTTTTCGACTTGTTTAAGAGAATGCAGAGGCAGAGCGAAGCTTTAGAATCTGAGCGGCTGAGGAGTAAAGAGGAGAATGGTGGCATAGGTCAATTCACCCGGGGCATCATCAAAACGATATCAACAGGTATCTCGAGACCACTCAGTCAGCTGATGGCTGGAGCTAGAGATATAGGATCTCTGGACACAGATCGGGGATTCGTTTCCAGTTTAGCATCAGGAGTGACCAGTGTTGCCAACGTTGCCAACTCACTTGTCGATACTTTTAAGGATCGGGTGCAAGCTATCTATCCAGGGACGGTGTGGTGTGGCGACGGAAGGTCCGCGGCCGCGCGCTCTGGTGACCTTGGCCTCTTCTTCTTCACGGACACGTGTTGTCGGCAGCACGACGCCTGCAAGCTGTATATCAAGGCTGGAGACTCTAAGTACGGCCTGACCAACACCGGACTCTTCACAAGGTCGCACTGCAGCTGCGACGTGAAGTTCCGGGAGTGTCTGAGGCGCACCAATTCGCTGGTGTCGGCCCAGATAGGGCTGACGTACTTCAACGTGCTGGGGCCGCAGTGCTTCAGGCGGGCTCACCCTATCGTGAGGTGCGCGAGGAGGACGCGCATTACTGGCCAGAGATGCGAAGAGTACGAGTTGGACTTCACCAAGCCCAGGATGTGGCAGTGGTTTGACAACGAGACATTTTAA
Protein
MYHPARKKLIDFYLSIVLIMSVTRTEARSFQMTANAKTNDDNLDNNLIDFEEDNTFKFNKKYGITSWHDDEYFNKKTHRYTIVNDIGEKIFESKNKAKNIRNNDATTTEDYRVIPLELITTTENTLISIIESTTEQDLSVIPLSTTAKVPNITITDSITLPVSTEYPETTTIEKIEIIVQEKDTAPEISKEVEVDLNNETTKFPFETTSEVTLESDEVNVSTESFDETTLIEQISKENYNNSKALTEIYKSTEDSVINTTEDTNFNVTDIHFELLNTTKLEIKKTNESRIDESRETDADVPIFTELDAEEEIDVPEDYYDTKDVVPTTAPRTDALSVIFGLAGSVVESVVETVAERVVPKSVFDLFKRMQRQSEALESERLRSKEENGGIGQFTRGIIKTISTGISRPLSQLMAGARDIGSLDTDRGFVSSLASGVTSVANVANSLVDTFKDRVQAIYPGTVWCGDGRSAAARSGDLGLFFFTDTCCRQHDACKLYIKAGDSKYGLTNTGLFTRSHCSCDVKFRECLRRTNSLVSAQIGLTYFNVLGPQCFRRAHPIVRCARRTRITGQRCEEYELDFTKPRMWQWFDNETF

Summary

Similarity
Belongs to the phospholipase A2 family.
Pfam
PF05826   Phospholip_A2_2
Interpro
IPR033113   PLipase_A2_His_AS        + More
IPR036444   PLipase_A2_dom_sf       
IPR016090   PLipase_A2_dom       
SUPFAM
SSF48619   SSF48619       
Gene 3D
PDB
1POC     E-value=2.4563e-30,     Score=331

Ontologies

Topology

Subcellular location
Secreted  
SignalP
Position:   1 - 27,         Likelihood:  0.763487
 
 
Length:
592
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.56433
Exp number, first 60 AAs:
0.50536
Total prob of N-in:
0.03031
outside
1  -  592
 
 

Population Genetic Test Statistics

Pi
32.228722
Theta
27.952759
Tajima's D
0.483728
CLR
0.685297
CSRT
0.513874306284686
Interpretation
Uncertain
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