Gene

KWMTBOMO12309  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009165

Annotation

PREDICTED:_syntaxin-16_[Bombyx_mori]

Location

Bomo_Chr20(+):11919204-11922741      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.268

CDS

ATGGTGTCGAGAAGTCTGACAGAAGTATTCGTATTAATGCGTAACAACGCGATACACAGCCGACAAATATTCTCAGAAAGAAATAATGATTCAGAACGTGCTAGACTTATGCGACGAAGCTCTCATGATATGGAAGCCGGAGCTGAGATGAGAGTTGACTCACGTGCCCCACCGCCCTGGGCTGATGCATTAGAGGAAGCTCACTATGTTATGACCAGACTAAAAACTAAACTATCGGAACTAGAAGCTAGACATGAGAAACAAATCAATCGGCCCGCTCTAGATGACTCCACTGAACAACAGCATATAGAGAGACTCAGCACTGAAATTGGAAGGCATTTCACGCATGCGCATACACACCTAACAGCTATTAAAGCACAAATAAGACACGGTAACAAAACAGAACAAAAACTAGCAGCCAACGTTGTACTAGCACTGGTCACAACTCTGCAGGAATTGAGCGTGATCTTCAGAACAGCGCAATCGAATTATTTAAAGTCCCTCACGTCCAGAGAAGAAAGGTCGAATGCGTACTTCGATCTCCCGAATTTCGAAGAGTTGAGTCTAAATGACAACGAGCTCCCCTCGGGACTTACGGACAACGAAACAGACCTGCTGTTTGCCTTACCGAGCACGTCAGGAACCCAAAAAACCTTCTACGACGAGGACCGAACGGACGATCAGCCTAAGCAGATGTACAATCAGAAACAGCTGCTGCTCATACAGGAAGCAAACACGAGAATGGTCGCAGAGAGGGAGGAAGAAGTAAACAAAGTTGTTAGATCTATAGTCGATTTGAATGAGATCTTCAAGGATTTGGCTCACATGGTTCACGAACAAGGTACGGTTTTAGATAGAATAGATTTCAATATAGAGCAGACGCACGTGCAGGTCAGCGAAGGCTACAAGCAGCTGCAGAAGGCGGAGAGGTACCAGCGGAAGAATAGAAAAATGAAATGCATCATGATACTCTGCGTTGTAGTCGTGGTGCTGTTCTTTCTGTTGATCGTTGTCAAAAGCTAG

Protein

MVSRSLTEVFVLMRNNAIHSRQIFSERNNDSERARLMRRSSHDMEAGAEMRVDSRAPPPWADALEEAHYVMTRLKTKLSELEARHEKQINRPALDDSTEQQHIERLSTEIGRHFTHAHTHLTAIKAQIRHGNKTEQKLAANVVLALVTTLQELSVIFRTAQSNYLKSLTSREERSNAYFDLPNFEELSLNDNELPSGLTDNETDLLFALPSTSGTQKTFYDEDRTDDQPKQMYNQKQLLLIQEANTRMVAEREEEVNKVVRSIVDLNEIFKDLAHMVHEQGTVLDRIDFNIEQTHVQVSEGYKQLQKAERYQRKNRKMKCIMILCVVVVVLFFLLIVVKS

Similarity

Belongs to the syntaxin family.

Uniprot

H9JI17   A0A2W1BRA1   A0A2H1W668   A0A1E1VYI5   A0A1E1W783   A0A194QBT5   + More
A0A212ENF5   A0A0N1IC15   A0A0L7L260   A0A0K8TKS9   A0A1I8PK79   A0A1A9Z8J5   A0A1A9XXY7   A0A1B0BY01   A0A067R5I7   A0A1A9UM67   A0A1B6H457   B4L7V7   A0A1B0FGM5   D3TQY2   A0A1B6M5P4   B3NWI7   W8BX74   B4R2Y1   B4I670   B4MTF2   A0A0A1WUK4   B4PY30   A0A1I8N9B9   A0A1W4V7V5   B3MQG5   A0A034VUN9   A0A1B6EA29   A0A3B0J8F5   A0A0K8TW29   B4JKB4   Q9VR90   A0A0M3QZH6   A0A1L8DUP2   A0A1B0DJ19   B4M9Z8   Q86P91   A0A1S3H775   A0A1Y1NFM2   D6WQ45   B4H2G5   A0A1S3H6T2   Q29IG7   A0A1S3DDM4   A0A026W4T2   T1J522   A0A158NYU7   A0A154PCS7   A0A0J7KPF3   A0A3B4GWF8   A0A3P9D7U6   A0A151X3F1   A0A3Q0TAV1   A0A3P8NPU4   A0A210QXT3   A0A1S3LC14   A0A3B4WP28   A0A3B4Z6P1   A0A3Q3CJN9   A0A1W4ZAT6   H3AS08   A0A1W4Z219   A0A1S3LAM9   A0A3Q4HDT2   A0A3Q3LGB8   A0A195BTL4   E2BT71   A0A3B3RIH7   A0A3B4TF95   A0A1W4ZAV0   A0A0P7XDZ2   A0A151NYT1   A0A3Q3N7F7   E2ALE3   E9IYN7   A0A3Q3B9H3   A0A3B1IV97   A0A2A3EEP4   A0A1W4Z211   A0A087ZYT0   A0A3Q1JVA0   I3KSY3   I3KSY4   A0A3Q3B9F8   A0A3B3DVX2   H3CNP9   A0A3Q1G386   C0HBC3   A0A3Q1CL11   A0A3P8SIJ0   A0A3B3ILF0   A0A3P9L4B0   H9GAR4   A0A3P8UZB8   G3WRF7  

Pubmed

19121390    28756777    26354079    22118469    26227816    26369729    + More
24845553    17994087    20353571    24495485    25830018    17550304    25315136    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    18057021    28004739    18362917    19820115    15632085    24508170    30249741    21347285    25186727    28812685    9215903    20798317    29240929    22293439    21282665    25329095    29451363    15496914    20433749    17554307    21881562    24487278    21709235   

EMBL

BABH01035414    KZ149926    PZC77568.1    ODYU01006600    SOQ48581.1    GDQN01011258    + More
JAT79796.1    GDQN01008192    JAT82862.1    KQ459193    KPJ03018.1    AGBW02013665    OWR43018.1    KQ461072    KPJ09841.1    JTDY01003418    KOB69583.1    GDAI01002674    JAI14929.1    JXJN01022447    KK852686    KDR18446.1    GECZ01000298    JAS69471.1    CH933814    EDW05532.1    CCAG010022669    EZ423834    ADD20110.1    GEBQ01008737    JAT31240.1    CH954180    EDV46807.1    GAMC01002688    JAC03868.1    CM000366    EDX18458.1    CH480823    EDW56276.1    CH963851    EDW75391.1    GBXI01012092    JAD02200.1    CM000162    EDX03002.1    CH902621    EDV44591.1    GAKP01011901    JAC47051.1    GEDC01015877    GEDC01002525    JAS21421.1    JAS34773.1    OUUW01000003    SPP78477.1    GDHF01034059    JAI18255.1    CH916370    EDW00017.1    AE014298    AAF50914.1    CP012528    ALC49389.1    GFDF01003946    JAV10138.1    AJVK01015650    CH940655    EDW66057.1    KRF82550.1    BT003305    AAO25065.1    GEZM01004707    JAV96328.1    KQ971354    EFA06921.2    CH479204    EDW30532.1    CH379063    EAL32686.1    KK107419    QOIP01000003    EZA51038.1    RLU25109.1    JH431850    ADTU01004269    KQ434864    KZC09068.1    LBMM01004726    KMQ92136.1    KQ982566    KYQ54780.1    NEDP02001335    OWF53523.1    AFYH01049050    AFYH01049051    AFYH01049052    KQ976407    KYM91414.1    GL450384    EFN81073.1    JARO02001753    KPP74522.1    AKHW03001485    KYO42032.1    GL440604    EFN65748.1    GL767043    EFZ14297.1    KZ288269    PBC29944.1    AERX01006799    AERX01006800    BT059629    ACN11342.1    AAWZ02028674    AEFK01023894    AEFK01023895   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000037510    UP000095300    + More
UP000092445    UP000092443    UP000092460    UP000027135    UP000078200    UP000009192    UP000092444    UP000008711    UP000000304    UP000001292    UP000007798    UP000002282    UP000095301    UP000192221    UP000007801    UP000268350    UP000001070    UP000000803    UP000092553    UP000092462    UP000008792    UP000085678    UP000007266    UP000008744    UP000001819    UP000079169    UP000053097    UP000279307    UP000005205    UP000076502    UP000036403    UP000261460    UP000265160    UP000075809    UP000261340    UP000265100    UP000242188    UP000087266    UP000261360    UP000261400    UP000264840    UP000192224    UP000008672    UP000261580    UP000261640    UP000078540    UP000008237    UP000261540    UP000261420    UP000034805    UP000050525    UP000261660    UP000000311    UP000264800    UP000018467    UP000242457    UP000005203    UP000265040    UP000005207    UP000261560    UP000007303    UP000257200    UP000257160    UP000265080    UP000001038    UP000265180    UP000265200    UP000001646    UP000265120    UP000007648   

PRIDE

H9JI17    Q9VR90    Q86P91   

Pfam

PF05739   SNARE        + More
PF00804   Syntaxin

Interpro

IPR006012   Syntaxin/epimorphin_CS        + More
IPR028673   STX16       
IPR010989   SNARE       
IPR000727   T_SNARE_dom       
IPR006011   Syntaxin_N       

SUPFAM

SSF47661   SSF47661       

ProteinModelPortal

H9JI17   A0A2W1BRA1   A0A2H1W668   A0A1E1VYI5   A0A1E1W783   A0A194QBT5   + More
A0A212ENF5   A0A0N1IC15   A0A0L7L260   A0A0K8TKS9   A0A1I8PK79   A0A1A9Z8J5   A0A1A9XXY7   A0A1B0BY01   A0A067R5I7   A0A1A9UM67   A0A1B6H457   B4L7V7   A0A1B0FGM5   D3TQY2   A0A1B6M5P4   B3NWI7   W8BX74   B4R2Y1   B4I670   B4MTF2   A0A0A1WUK4   B4PY30   A0A1I8N9B9   A0A1W4V7V5   B3MQG5   A0A034VUN9   A0A1B6EA29   A0A3B0J8F5   A0A0K8TW29   B4JKB4   Q9VR90   A0A0M3QZH6   A0A1L8DUP2   A0A1B0DJ19   B4M9Z8   Q86P91   A0A1S3H775   A0A1Y1NFM2   D6WQ45   B4H2G5   A0A1S3H6T2   Q29IG7   A0A1S3DDM4   A0A026W4T2   T1J522   A0A158NYU7   A0A154PCS7   A0A0J7KPF3   A0A3B4GWF8   A0A3P9D7U6   A0A151X3F1   A0A3Q0TAV1   A0A3P8NPU4   A0A210QXT3   A0A1S3LC14   A0A3B4WP28   A0A3B4Z6P1   A0A3Q3CJN9   A0A1W4ZAT6   H3AS08   A0A1W4Z219   A0A1S3LAM9   A0A3Q4HDT2   A0A3Q3LGB8   A0A195BTL4   E2BT71   A0A3B3RIH7   A0A3B4TF95   A0A1W4ZAV0   A0A0P7XDZ2   A0A151NYT1   A0A3Q3N7F7   E2ALE3   E9IYN7   A0A3Q3B9H3   A0A3B1IV97   A0A2A3EEP4   A0A1W4Z211   A0A087ZYT0   A0A3Q1JVA0   I3KSY3   I3KSY4   A0A3Q3B9F8   A0A3B3DVX2   H3CNP9   A0A3Q1G386   C0HBC3   A0A3Q1CL11   A0A3P8SIJ0   A0A3B3ILF0   A0A3P9L4B0   H9GAR4   A0A3P8UZB8   G3WRF7  

PDB

2NPS     E-value=1.81747e-08,     Score=140

KEGG

101742448    K08489 syntaxin 16 | (RefSeq) syntaxin-16

PATHWAY

04130    SNARE interactions in vesicular transport - Bombyx mori (domestic silkworm)

GO

GO:0006886   GO:0016192   GO:0016021   GO:0005484   GO:0005623   GO:0016020   GO:0005794   GO:0048193   GO:0005764   GO:0016081   GO:0007269   GO:0000139   GO:0005886   GO:0098793   GO:0031201   GO:0006906   GO:0000149   GO:0048278   GO:0012505   GO:0039023   GO:0005515   GO:0019538   GO:0030145   GO:0000049   GO:0005975   GO:0004553  

PANTHER

PTHR19957:SF83  

Length:

340

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.86344

Exp number, first 60 AAs:

0.00047

Total prob of N-in:

0.74708

inside

1  -  319

TMhelix

320  -  338

outside

339  -  340

 

 

Pi

8.256044

Theta

13.783768

Tajima's D

-0.592625

CLR

0.014381

CSRT

0.224538773061347

Interpretation

Uncertain