Gene

KWMTBOMO12307

Pre Gene Modal

BGIBMGA009164

Annotation

PREDICTED:_XK-related_protein_6_[Papilio_xuthus]

Location

Bomo_Chr20(+):11907814-11912807      View in EpiBrowser

Full name

XK-related protein      

Location in the cell

PlasmaMembrane   Reliability : 4.827

CDS

ATGCCTCAAATCGTTCGAGACATGTTTCAAAACGGCATAGCTTATGACGAGCCGGATCGAATGCCCGATAAGATTAACATTCGGAATCTGGACATTATTATGTATGTTGTAGCTATTTTGGGTCATTTTGTCGACTTAGGACTCGATATAAATATTGCTGTTAGATATTCGTTGGCTGGAATGGTGACAGAGTTCGGCTGGACCCTCGCCTTTATTCTTATACCTGCTTTTGTGAATACAGCGGTCTCGATACGAATGTATGCCCAAGATAAACAACAAGATTCACTAACAAATGAGCTGACAAGGAGAAAATGGGTTCGAATCTTCATACTTGTTTTACAGATGGCTCCGATACTTAGATTTGCTGATGCTCTAATTTATGCTATAAAATCTCGACGAGCTGCAAGCAGGAAAGATGTCGCATCTCAAAAGTTATACTTTGGTCTTATGCTGAAAGAAGACTCTGATGCAGCATTGCTCCGGATATTTGAGTGTTTCCTGGAAGCCGCACCACAACAGGTGCTACAAACCAGTCTGCTGTTGAGAGCTCAAGAGGAATTTGCTGTGCATCAAATCCTATCGATAGTTTCCTCAGTGGTGGGCATGGGTTGGTGCCTGGCTGCGTACCAGCGAGCCATACGGTTCGCTCAGAACGACAAGTCCAACATGACTTGGTACGGGACTATACTGCAAACGGTTTGGCACTTTCTCGTCACGTTGAGCCGCATATCGTCTCTGGCCGCGGTGGCTTACCTGTACCCCCACTGGACCGTCGTGGCGTGCTTGGTCCACGTGGCGGCCACGGCGACCCTGCTGCAGATGTTTGACCGGTCAGACTTCTGCTCACAGAACAAACTGGCCGAGGTGTCCTTCTCCCTGGCCCTGGGAGCCGTCTACATATTCACGTACGTGCTCCCCGTGGAAGGGAGGACCAGACACAGATACGCTGTATACTACGTCGTATGCTTCATCCAGAATATAATATGTGCGTCGATATGGTGTTACTATTCAGAGGACGAATTAAAACAATCCGTGTATTTCGTACCGATTCTGGTGTTGTGTATCTTGCCATTTATTATTGGCATAAGTGTAATGGTGGTGTATTATGCATTCTTTCATCCAAAACTAGGAAGGAATAAAGATGATTCAGCTGTTTCTTTTAAAGTCGTCGACCAGGTTGCTGAGTTTAGCTAG

Protein

MPQIVRDMFQNGIAYDEPDRMPDKINIRNLDIIMYVVAILGHFVDLGLDINIAVRYSLAGMVTEFGWTLAFILIPAFVNTAVSIRMYAQDKQQDSLTNELTRRKWVRIFILVLQMAPILRFADALIYAIKSRRAASRKDVASQKLYFGLMLKEDSDAALLRIFECFLEAAPQQVLQTSLLLRAQEEFAVHQILSIVSSVVGMGWCLAAYQRAIRFAQNDKSNMTWYGTILQTVWHFLVTLSRISSLAAVAYLYPHWTVVACLVHVAATATLLQMFDRSDFCSQNKLAEVSFSLALGAVYIFTYVLPVEGRTRHRYAVYYVVCFIQNIICASIWCYYSEDELKQSVYFVPILVLCILPFIIGISVMVVYYAFFHPKLGRNKDDSAVSFKVVDQVAEFS

Similarity

Belongs to the XK family.

Uniprot

H9JI16   A0A2W1BY03   A0A2H1W663   A0A194QDH6   A0A0N1I732   A0A1E1WR62   + More
A0A067R7K9   A0A2J7RHZ7   A0A1B6CMJ8   A0A1B6ILV7   A0A1B6MFL7   T1I8Z9   A0A1Y1M4M5   A0A0A9W0G2   A0A023F1B8   D6WQ44   A0A1W4WVF0   A0A0L7RGD5   J3JZ03   A0A0N0U2W5   B0X3B6   A0A069DS41   Q16KK2   A0A195AYU9   A0A195F6K6   A0A151JRB9   A0A154PAS6   A0A026WK72   A0A151WJE3   E2A496   A0A2A3ENI2   A0A2H8TT30   A0A224XUE2   J9KXW8   A0A151IN63   Q16GA2   A0A1S4G1S6   A0A1Y1LZL4   E0VCZ8   A0A2P6KGN6   A0A1J1IXL8   F4WSY7   A0A0K8VB19   A0A0C9RN32   T1K712   W8B2C7   A0A226EY35   A0A034W8R9   A0A158NZ37   E0VH93   A0A1W4WBV9   A0A2M4BPV4   A0A2J7Q419   A0A2M4BPQ8   A0A1I8MG69   A0A0L0C3K2   A0A1D2MTG0   A0A067R5K1   A0A182T134   A0A2M4CJJ0   A0A1I8PN38   A0A182QTC2   A0A0A1X4B3   A0A084VV32   A0A1Z5L4C0   A0A182UZR0   A0A182TVM4   A0A182WW51   A0A182IA39   Q7QFP3   A0A182MVZ8   A0A182RZ51   N6UHI6   A0A1Y3AS90   A0A0P6GX77   A0A0P6FL65   A0A182FJS9   A0A0P5ST97   A0A1A9XYC9   B7Q9H9   A0A1B0FI26   A0A182W4D9   A0A1B0ASX5   A0A131XXS1   A0A293MUG9   A0A182P1N6   A0A182Y7M6   A0A131YFU8   A0A1E1X929   A0A0N8C920   A0A182JVS8   V5I9M3   A0A087TBQ3   A0A1S3H968   A0A0P5XD70  

Pubmed

19121390    28756777    26354079    24845553    28004739    25401762    + More
25474469    18362917    19820115    22516182    23537049    26334808    17510324    24508170    30249741    20798317    20566863    21719571    24495485    25348373    21347285    25315136    26108605    27289101    25830018    24438588    28528879    12364791    14747013    17210077    25244985    26830274    28503490   

EMBL

BABH01035413    KZ149926    PZC77566.1    ODYU01006600    SOQ48579.1    KQ459193    + More
KPJ03020.1    KQ461072    KPJ09839.1    GDQN01001539    JAT89515.1    KK852686    KDR18462.1    NEVH01003506    PNF40455.1    GEDC01030653    GEDC01022622    JAS06645.1    JAS14676.1    GECU01019817    JAS87889.1    GEBQ01005230    JAT34747.1    ACPB03001923    GEZM01044521    JAV78167.1    GBHO01045245    GBHO01045244    GBRD01012614    JAF98358.1    JAF98359.1    JAG53210.1    GBBI01003442    JAC15270.1    KQ971354    EFA06132.1    KQ414596    KOC70037.1    APGK01004275    APGK01010423    BT128484    KB738190    KB735673    KI208741    KI209238    KI209920    AEE63441.1    ENN82734.1    ENN83336.1    ERL95923.1    ERL96001.1    ERL96110.1    KQ435944    KOX68202.1    DS232312    EDS39808.1    GBGD01002129    JAC86760.1    CH477953    EAT34830.1    KQ976701    KYM77217.1    KQ981768    KYN36016.1    KQ978607    KYN29913.1    KQ434864    KZC09005.1    KK107178    QOIP01000006    EZA56046.1    RLU21235.1    KQ983055    KYQ47815.1    GL436596    EFN71767.1    KZ288206    PBC33064.1    GFXV01005315    MBW17120.1    GFTR01004837    JAW11589.1    ABLF02024989    KQ976963    KYN06776.1    CH478302    EAT33271.1    GEZM01044522    GEZM01044520    JAV78168.1    DS235068    EEB11254.1    MWRG01012483    PRD25474.1    CVRI01000059    CRL03297.1    GL888331    EGI62691.1    GDHF01016170    JAI36144.1    GBYB01014867    JAG84634.1    CAEY01001799    GAMC01013873    JAB92682.1    LNIX01000001    OXA62555.1    GAKP01008414    GAKP01008412    JAC50540.1    ADTU01003760    ADTU01003761    DS235165    EEB12749.1    GGFJ01005852    MBW54993.1    NEVH01018398    PNF23341.1    GGFJ01005851    MBW54992.1    JRES01000948    KNC26913.1    LJIJ01000555    ODM96296.1    KDR18461.1    GGFL01001344    MBW65522.1    AXCN02001308    GBXI01008355    JAD05937.1    ATLV01017149    KE525157    KFB41826.1    GFJQ02004835    JAW02135.1    APCN01001102    AY534995    AAAB01008846    AAT07393.1    EAA06621.3    AXCM01001777    APGK01034939    APGK01034940    KB740923    KB631963    ENN78087.1    ERL87492.1    MUJZ01067517    OTF70055.1    GDIQ01027557    JAN67180.1    GDIQ01046327    JAN48410.1    GDIP01140944    LRGB01000930    JAL62770.1    KZS14908.1    ABJB010029824    ABJB010459589    ABJB010755180    ABJB010894234    DS889189    EEC15501.1    CCAG010009519    JXJN01003037    GEFM01003987    JAP71809.1    GFWV01018850    MAA43578.1    GEDV01010324    JAP78233.1    GFAC01003438    JAT95750.1    GDIQ01102899    JAL48827.1    GALX01002685    JAB65781.1    KK114484    KFM62542.1    GDIP01073861    JAM29854.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000027135    UP000235965    UP000015103    + More
UP000007266    UP000192223    UP000053825    UP000019118    UP000030742    UP000053105    UP000002320    UP000008820    UP000078540    UP000078541    UP000078492    UP000076502    UP000053097    UP000279307    UP000075809    UP000000311    UP000242457    UP000007819    UP000078542    UP000009046    UP000183832    UP000007755    UP000015104    UP000198287    UP000005205    UP000095301    UP000037069    UP000094527    UP000075901    UP000095300    UP000075886    UP000030765    UP000075903    UP000075902    UP000076407    UP000075840    UP000007062    UP000075883    UP000075900    UP000069272    UP000076858    UP000092443    UP000001555    UP000092444    UP000075920    UP000092460    UP000075885    UP000076408    UP000075881    UP000054359    UP000085678   

PRIDE

H9JI16   

Pfam

PF09815   XK-related        + More
PF05699   Dimer_Tnp_hAT
PF02892   zf-BED
PF13855   LRR_8
PF00636   Ribonuclease_3
PF00035   dsrm
PF14622   Ribonucleas_3_3
PF01106   NifU
PF08712   Nfu_N

Interpro

IPR018629   XK-rel        + More
IPR036236   Znf_C2H2_sf       
IPR012337   RNaseH-like_sf       
IPR003656   Znf_BED       
IPR008906   HATC_C_dom       
IPR011907   RNase_III       
IPR000372   LRRNT       
IPR014720   dsRBD_dom       
IPR036389   RNase_III_sf       
IPR001611   Leu-rich_rpt       
IPR020846   MFS_dom       
IPR032675   LRR_dom_sf       
IPR000999   RNase_III_dom       
IPR001075   NIF_FeS_clus_asmbl_NifU_C       
IPR014824   Nfu/NifU_N       
IPR034904   FSCA_dom_sf       
IPR036498   Nfu/NifU_N_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF57667   SSF57667       
SSF69065   SSF69065       
SSF117916   SSF117916       
SSF110836   SSF110836       

Gene 3D

1.10.1520.10     3.80.10.10     3.30.1370.70     3.30.300.130    

CDD

cd00048  DSRM
cd06174  MFS
cd00593  RIBOc

ProteinModelPortal

H9JI16   A0A2W1BY03   A0A2H1W663   A0A194QDH6   A0A0N1I732   A0A1E1WR62   + More
A0A067R7K9   A0A2J7RHZ7   A0A1B6CMJ8   A0A1B6ILV7   A0A1B6MFL7   T1I8Z9   A0A1Y1M4M5   A0A0A9W0G2   A0A023F1B8   D6WQ44   A0A1W4WVF0   A0A0L7RGD5   J3JZ03   A0A0N0U2W5   B0X3B6   A0A069DS41   Q16KK2   A0A195AYU9   A0A195F6K6   A0A151JRB9   A0A154PAS6   A0A026WK72   A0A151WJE3   E2A496   A0A2A3ENI2   A0A2H8TT30   A0A224XUE2   J9KXW8   A0A151IN63   Q16GA2   A0A1S4G1S6   A0A1Y1LZL4   E0VCZ8   A0A2P6KGN6   A0A1J1IXL8   F4WSY7   A0A0K8VB19   A0A0C9RN32   T1K712   W8B2C7   A0A226EY35   A0A034W8R9   A0A158NZ37   E0VH93   A0A1W4WBV9   A0A2M4BPV4   A0A2J7Q419   A0A2M4BPQ8   A0A1I8MG69   A0A0L0C3K2   A0A1D2MTG0   A0A067R5K1   A0A182T134   A0A2M4CJJ0   A0A1I8PN38   A0A182QTC2   A0A0A1X4B3   A0A084VV32   A0A1Z5L4C0   A0A182UZR0   A0A182TVM4   A0A182WW51   A0A182IA39   Q7QFP3   A0A182MVZ8   A0A182RZ51   N6UHI6   A0A1Y3AS90   A0A0P6GX77   A0A0P6FL65   A0A182FJS9   A0A0P5ST97   A0A1A9XYC9   B7Q9H9   A0A1B0FI26   A0A182W4D9   A0A1B0ASX5   A0A131XXS1   A0A293MUG9   A0A182P1N6   A0A182Y7M6   A0A131YFU8   A0A1E1X929   A0A0N8C920   A0A182JVS8   V5I9M3   A0A087TBQ3   A0A1S3H968   A0A0P5XD70  

KEGG

101740188    no KO assigned | (RefSeq) XK-related protein 6

GO

GO:0016021   GO:0016020   GO:0005886   GO:1902742   GO:0070782   GO:0043652   GO:0003677   GO:0046983   GO:0016075   GO:0004525   GO:0003723   GO:0006396   GO:0051536   GO:0005506   GO:0016226   GO:0005737   GO:0008092   GO:0019898   GO:0003924   GO:0019538   GO:0030145   GO:0000049   GO:0005975   GO:0004553  

Subcellular location

Membrane  

Length:

397

Number of predicted TMHs:

8

Exp number of AAs in TMHs:

186.63044

Exp number, first 60 AAs:

21.63416

Total prob of N-in:

0.96849

POSSIBLE N-term signal

sequence

inside

1  -  32

TMhelix

33  -  55

outside

56  -  64

TMhelix

65  -  84

inside

85  -  104

TMhelix

105  -  127

outside

128  -  186

TMhelix

187  -  209

inside

210  -  248

TMhelix

249  -  271

outside

272  -  285

TMhelix

286  -  308

inside

309  -  314

TMhelix

315  -  337

outside

338  -  346

TMhelix

347  -  369

inside

370  -  397

 

 

Pi

2.255222

Theta

13.534685

Tajima's D

-2.377527

CLR

69.822673

CSRT

0.00154992250387481

Interpretation

Possibly Positive selection