SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12306
Annotation
PREDICTED:_vacuolar_protein_sorting-associated_protein_28_homolog_[Bombyx_mori]
Full name
Vacuolar protein sorting-associated protein 28 homolog      
Alternative Name
ESCRT-I complex subunit VPS28
Location in the cell
Cytoplasmic   Reliability : 2.4
 

Sequence

CDS
ATGCAAGATACACGTCCGGAATTGTATGAAGAGATTAAATTGTACAAAAATGCGCGTGAACGAGAAAAGCATGATAACATGGCTGAGCTCTATGCTGTCGTCTGTACCCTTCAGCACCTGGAGAAGGCATACATGCGTGATTGTGTGCGAGCACAGGAATACACGGCGGCATGCAGTCGTCTCCTCGTGCAGTACAAAGTGGCTTTCAAACAAGTACAGGCTGATGAGTTTCCCAATATTGAAGCTTTTGTTGCTAAATACAGGTTAGACTGTCCTGCTGCTTTGGAACGAATAAGAGAGAACAAACCGAATCTCATCAAGGATGACAAAGGGAACACTAATAAATACATTGCAGAAATTGTATCGTTATTTATAACCCTAATGGATAAACTGCGTCTAGAGTTCCGTGCGATGGACATGATTCAGCCTGAACTTCGTGACCTTCGCGACACCATGGACCGGCTCAGCATGCTCCCTGATGACTTTGAAGGGAAACTCAAGGTGCAGGAATGGCTAGATAAGTTATCTGAGATGTCAGCATCGGATGAACTGTCCGAAGCCCAAGTGCGACAGCTGGTGTTCGACCTGGAGACCTCATATGGGGCTTTCAATAAATTTTTACACAAGGACTGA
Protein
MQDTRPELYEEIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLHKD

Summary

Description
Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
Component of the ESCRT-I complex, a regulator of vesicular trafficking process.
Subunit
Component of the ESCRT-I complex (endosomal sorting complex required for transport I).
Similarity
Belongs to the VPS28 family.
Keywords
Complete proteome   Endosome   Protein transport   Reference proteome   Transport  
Feature
chain  Vacuolar protein sorting-associated protein 28 homolog
EMBL
KZ149926    PZC77564.1    NWSH01006357    PCG63490.1    KY694529    ODYU01006600    + More
ARD08870.1    SOQ48577.1    GDQN01006824    GDQN01003832    JAT84230.1    JAT87222.1    AGBW02014435    OWR41690.1    KQ461072    KPJ09837.1    GAIX01012384    JAA80176.1    KQ459193    KPJ03022.1    AJWK01013087    AJVK01035048    AJVK01059471    GFDF01003563    JAV10521.1    KQ435824    KOX72168.1    KQ434864    KZC09077.1    KQ414613    KOC68974.1    GL888122    EGI66961.1    AXCN02000905    GL450384    EFN81106.1    JXUM01062815    GAPW01004351    KQ562217    JAC09247.1    KXJ76373.1    LBMM01009759    KMQ87892.1    GL437116    EFN71068.1    KK107151    EZA57332.1    KK852611    KDR20282.1    AAAB01008960    EAA10763.1    APCN01004428    GL767043    EFZ14317.1    CH478076    CH477239    EAT34070.1    EAT46492.1    NEVH01021933    PNF19235.1    GBHO01026572    GBHO01026571    GBRD01009884    GBRD01009883    GDHC01014180    JAG17032.1    JAG17033.1    JAG55940.1    JAQ04449.1    GBYB01007384    JAG77151.1    GDHC01014129    JAQ04500.1    GEBQ01022877    GEBQ01014503    JAT17100.1    JAT25474.1    GEDC01010638    JAS26660.1    AXCM01003851    PYGN01000874    PSN39808.1    DS231873    EDS41563.1    GGFM01004225    MBW24976.1    GGFK01009692    MBW43013.1    ADMH02001057    ETN64264.1    KK854005    PTY09078.1    GALX01001374    JAB67092.1    GGFJ01009359    MBW58500.1    GECU01037295    JAS70411.1    LJIG01022867    KRT78318.1    GECZ01029992    GECZ01023771    GECZ01012158    JAS39777.1    JAS45998.1    JAS57611.1    GFTR01003602    JAW12824.1    GFDL01008842    JAV26203.1    GDKW01000790    JAI55805.1    GBGD01002890    JAC85999.1    GECL01002839    JAP03285.1    DS235858    EEB19112.1    KQ971354    EFA07193.1    ABLF02029348    AK342379    BAH72426.1    APGK01025890    APGK01025891    KB740605    KB632095    ENN80037.1    ERL88759.1    BT127203    AEE62165.1    AK417287    BAN20502.1    GGMR01001494    MBY14113.1    CH954177    EDV59582.1    AE013599    AGB93329.1    CH480816    EDW46867.1    CM000362    CH981965    CM002911    EDX06125.1    EDX15453.1    KMY92175.1    AY060620    GDAI01000337    JAI17266.1    GGLE01005132    MBY09258.1    ACPB03027317    GAHY01000690    JAA76820.1    UFQS01001036    UFQS01001361    UFQT01001036    UFQT01001361    SSX08676.1    SSX10515.1    SSX28591.1    CM000157    EDW89283.1    GGMR01018976    MBY31595.1    ADTU01004216    GADI01003802    JAA70006.1    KQ761768    OAD57081.1    KQ978566    KYN30113.1    KQ982566    KYQ54739.1    CH916367    EDW02265.1    KZ288269    PBC29953.1    NNAY01000195    OXU30084.1    GANO01001177    JAB58694.1    KQ981276    KYN43706.1    GEIB01001608    JAR86705.1    GFWV01007903    MAA32633.1    ABJB010138864    ABJB010772480    ABJB010834636    ABJB010861176    DS779254    EEC09573.1    QOIP01000003    RLU25066.1    GEZM01087328    JAV58766.1    KQ977220    KYN04914.1   
Pfam
PF03997   VPS28
Interpro
IPR037206   VPS28_C_sf        + More
IPR007143   Vps28       
IPR017898   VPS28_N       
IPR037202   ESCRT_assembly_dom       
IPR017899   VPS28_C       
IPR038358   VPS28_N_sf       
SUPFAM
SSF140427   SSF140427        + More
SSF140111   SSF140111       
Gene 3D
PDB
2J9W     E-value=1.17753e-31,     Score=337

Ontologies

Topology

Subcellular location
Endosome  
Length:
210
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02699
Exp number, first 60 AAs:
0.00035
Total prob of N-in:
0.09955
outside
1  -  210
 
 

Population Genetic Test Statistics

Pi
2.586607
Theta
17.785365
Tajima's D
-2.206648
CLR
225.811319
CSRT
0.00459977001149943
Interpretation
Uncertain
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