Silkworm Genome Informatics Database

Gene

KWMTBOMO12300

Pre Gene Modal

BGIBMGA009160

Annotation

PREDICTED:_protein_4.1-like_[Bombyx_mori]

Location

Bomo_Chr20(+):11754054-11771628 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.843

CDS

ATGCGCGAGAGTATGCGGAGGTTAGCCTTTGACGACGGCGAAGAGAAGGCGGTGAGGGGGGTGCGAAGAGTGCGGGTGGAACTCCTCGACGGTGACCATATCACCATCGAACGGAAAGCCCGCGGTGAAGACCTGCTAGACAGAATCTGCGAGGACCTTGACGTCGCCGAGAAAGATTACTTTGGACTTCTGCACCTCCAGCGAGGGGACCCCAGGGTGTGGGTCGATCTCAACAAGCGACTGTCCAAGACTTTTAGAAATGAACCCTGGGAAGTAATGTTTGCTGTTAAATTCTACCCCCCGGAACCCACGGCGCTGGAGGATGAAGTGTCCAGATACCAAATCGGTCTGGCCGTCAAGAAGGATATTGCCGAAGGTCGGCTGCCCTGCTCCCCCATCACTCTAGCGCTGCTGAGCTCGTACGAGCTGCAGGCGGCGGCGGGAGACCACGGGGCGGGGTGTCAGTGTGGGGCGCTGCTGGCGGCCGCCCCGCCCCCACCCGCGCCCCTCGCGCGCTCCGCCCTGCAGGACAACGTGCACGCCCTCTATCTGAAACACAGGTACGGCTCCATGGTTTGCCGATGCCAAAACTTATTTCTTCTTCTTTGTCTCCTCCTTATCCCACTAGGGGGATCGACACAGTGA

Protein

MRESMRRLAFDDGEEKAVRGVRRVRVELLDGDHITIERKARGEDLLDRICEDLDVAEKDYFGLLHLQRGDPRVWVDLNKRLSKTFRNEPWEVMFAVKFYPPEPTALEDEVSRYQIGLAVKKDIAEGRLPCSPITLALLSSYELQAAAGDHGAGCQCGALLAAAPPPPAPLARSALQDNVHALYLKHRYGSMVCRCQNLFLLLCLLLIPLGGSTQ

Uniprot

H9JI12 A0A2H1VWK5 A0A2A4IWF4 A0A2W1BR31 A0A2A4J0H2 A0A0N1INQ3 + More
A0A212EJP0 A0A2W1C0G2 A0A2A4J3Z3 A0A2A4J548 H9JHX2 A0A1B6KRS2 A0A1B6C8P8

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01035394 BABH01035395 ODYU01004882 SOQ45210.1 NWSH01005545 PCG64135.1 + More
KZ149926 PZC77562.1 NWSH01004116 PCG65481.1 KQ461072 KPJ09833.1 AGBW02014435 OWR41694.1 PZC77563.1 NWSH01003142 PCG66867.1 PCG66866.1 BABH01035409 BABH01035410 GEBQ01025856 JAT14121.1 GEDC01027467 JAS09831.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000007151

PRIDE

H9JI12 H9JHX2

Pfam

PF00373   FERM_M        + More
PF09379   FERM_N
PF09380   FERM_C
PF08736   FA
PF05902   4_1_CTD

Interpro

IPR029071   Ubiquitin-like_domsf        + More
IPR000299   FERM_domain
IPR018979   FERM_N
IPR019748   FERM_central
IPR035963   FERM_2
IPR014352   FERM/acyl-CoA-bd_prot_sf
IPR019749   Band_41_domain
IPR018980   FERM_PH-like_C
IPR000798   Ez/rad/moesin-like
IPR011993   PH-like_dom_sf
IPR019747   FERM_CS
IPR014847   FERM-adjacent
IPR008379   Band_4.1_C

SUPFAM

SSF47031 SSF47031 + More
SSF54236 SSF54236

Gene 3D

1.20.80.10 2.30.29.30

CDD

cd14473 FERM_B-lobe

ProteinModelPortal

H9JI12 A0A2H1VWK5 A0A2A4IWF4 A0A2W1BR31 A0A2A4J0H2 A0A0N1INQ3 + More
A0A212EJP0 A0A2W1C0G2 A0A2A4J3Z3 A0A2A4J548 H9JHX2 A0A1B6KRS2 A0A1B6C8P8

PDB

6IBE E-value=1.07018e-28, Score=312

KEGG

105841612 K06107 erythrocyte membrane protein band 4.1 | (RefSeq) protein 4.1-like

GO

GO:0005856 GO:0008092 GO:0003779 GO:0005198 GO:0005886 GO:0005911 GO:0007016 GO:0001558 GO:0005737 GO:0019898 GO:0003924 GO:0019538 GO:0030145 GO:0000049 GO:0005975 GO:0004553

Length:

214

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.20599

Exp number, first 60 AAs:

0

Total prob of N-in:

0.50395

outside

1 - 214

Pi

4.722598

Theta

16.930218

Tajima's D

-1.580004

CLR

19.180633

CSRT

0.0485975701214939

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics