Gene

KWMTBOMO12296

Pre Gene Modal

BGIBMGA009158

Annotation

PREDICTED:_protein_CBFA2T1_[Bombyx_mori]

Location

Bomo_Chr20(+):11695854-11715697      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.774

CDS

ATGAATTATAAAACGGCAGCTCTGTCCTCAACGGAGTCCCTGTCTCCTCCTCTCGCTGATGGAGCACGGGCCCCGGCTCTGCAGCGGCTTCGGCGATTCCTCTCGGCTCTGCAACAGTTCGCCACGGACGTTGGTGCTGAAATCGGCGAGAGAGTTAAACATCTTATCCACAATCTTGTGGCAGGTACAATGAACGTCGAGGAGTTCCAGAGCGGCGTGCAGGAGTGCACCAACTACCCGCTGCGGGCCTCCGTGCCTGGCTTCCTCCGCGCGCTGCTGCCGCTAGCACAGCGAGACCTGCACGCGCGCGCCCGCAGAGCCAAGCAGACTCCCCTCCAGTACATCAGATCTCACGAGCACCTGATCTTGGAGTCAGGGGGAGACTCCAGCGACATATTCGCTCCGCAGCATCCCGGCACAGTTCCCGAAGGGGGCATCAAGAGACGAGCGAGTGATCCGTTCTACGAGACATCGCAAACAAACGGCGCACATCCCGAAGACTTCCCTCCTCACGCAAAAAGACCTCCCCCCTCCAGCTTATTCACGACCTCCCCCTTTTTATACCCTCTACCCAGCAACGCGAGTTTGTTCGAATACGGCCACTACCAAGGGTTTCATGCCGGACACAGTGATTCTGGATTTGAAAGAAGAGATGGTGGTATTTCGGTTCGAGATGTCTCCTCAATGAACGCGCCGTTCGAGCCGCGAGGTTCCAGTTCCTCGTCAGTCGGCTTACTCAAGACCGATGATGAGTGGAGGAACATCAACACCATGCTTAACTGTATCCTCAGCATGGTAGAGAAGACCAAACGGGCTTTGGCTATATTACAGCAAAGAGGAGTGGAGCCGCCAGAAAATAATGATATCAAAAGAACTGCAAACGAGATCATGGCGGCGGCCGTCCGGCAGACTGAAGAGCGAGTGGCAGAGGTTCGGAGACGGGCTGAAGATGCTGTCAATCAGGTAAAAAGGCAGGCTCTGATAGAGCTGCAGAGAGCCGTGGGTGCGGCGGAGAGCAAGGCGCTCGAGCTGGTGGCGCCGGCCGCCCCTCCCGCCGCGCCCGCCGCCCCGCCCGCACACCCCGCGCACCCCGCGCCGCCGCTCAGCCCCACTCCAGCGCCACACCATACGTGCTGCTGGAACTGCGGCCGGAAGGCTCAAGAGACGTGCTCTGGATGTAACTCGGCGCGGTACTGCGGCTCCTTCTGTCAGCACAAGGACTGGGAGAACCATCACCAGGTGTGCAGCGGACGTGACCAGAAGCCAACGGCTCTGATTCGAACCTCTCCCCCGACCACGCAACCCAGCCTGAAGCCGCGATCGACCACCCCGATAGCTGCCGCCGCCCAGCCCGACAGCCGCCTGTCCCTGAGCACGCTGGGCACGGCCGAGCGCCTGCTGACGGCGGAGCGCCCGCTGGCGACCGGCGCCGACCGCCTGGCGCTGGCGACTCTGTCAGCGGCCCAGAGTGCCGGCGGCGTCGGCACCAAGAAATGA

Protein

MNYKTAALSSTESLSPPLADGARAPALQRLRRFLSALQQFATDVGAEIGERVKHLIHNLVAGTMNVEEFQSGVQECTNYPLRASVPGFLRALLPLAQRDLHARARRAKQTPLQYIRSHEHLILESGGDSSDIFAPQHPGTVPEGGIKRRASDPFYETSQTNGAHPEDFPPHAKRPPPSSLFTTSPFLYPLPSNASLFEYGHYQGFHAGHSDSGFERRDGGISVRDVSSMNAPFEPRGSSSSSVGLLKTDDEWRNINTMLNCILSMVEKTKRALAILQQRGVEPPENNDIKRTANEIMAAAVRQTEERVAEVRRRAEDAVNQVKRQALIELQRAVGAAESKALELVAPAAPPAAPAAPPAHPAHPAPPLSPTPAPHHTCCWNCGRKAQETCSGCNSARYCGSFCQHKDWENHHQVCSGRDQKPTALIRTSPPTTQPSLKPRSTTPIAAAAQPDSRLSLSTLGTAERLLTAERPLATGADRLALATLSAAQSAGGVGTKK

Uniprot

A0A2H1W2X5   A0A2A4JPH4   A0A2W1BR36   A0A194QBU5   A0A0N1PFR6   A0A212EJM9   + More
A0A139WEF7   A0A1W4WLX1   U5EYB2   A0A336MKV4   A0A1Y1KHN6   A0A182W2C0   A0A2M4BIW2   Q16H02   A0A2M4BI68   A0A2M3ZKS2   W5JJJ4   A0A182QQD8   A0A182GIY3   A0A182R577   A0A2M4AKI2   A0A2M4AK15   A0A2M4AI29   A0A182FVQ8   A0A2M4AHU2   A0A182GFI4   A0A182YMH0   A0A084WUR2   A0A182JYU7   A0A087T4P0   A0A1J1HI95   A0A1L8DDI8   A0A3Q2TJV8   C3ZBL4   A0A3B3WXJ5   A0A3B4F6X1   L5JNJ9   H2U0M9   A0A1I8MYU8   A0A3Q1JWW0   A0A3P9J989   A0A3P9HT63   A0A3P9L2M1   A0A3P9MDM5   H2LNE5   A0A3Q1I964   A0A3B4AYS7   A0A3Q1BR38   A0A1A9VQ65   A0A1B0ADB6   A0A3B3CEB1   A0A3B3CED4   H2U0N1   A0A3S2PY62   A0A3B3CC25   A0A2R8PVW8   A0A1A9XF01   H2U0M8   A0A1I8PZF4   A0A1I8PZH7   A0A3Q0SUZ8   A0A1I8PZJ9   A0A2K6RKK1   Q5IJ71   A0A0L0BPF6   A0A2I4ASR7   A0A3B4CJC9   A0A1A9W8E6   A0A3P8TWZ4   A0A3B4TUE1   A0A3Q4HX33   A0A3P8U2Q7   N6U771   A0A3Q2YN62   A0A3Q2XEY3   A0A1I8PZH6   A0A3Q1BN58   A0A3Q7WIV7   A0A3Q1GRI4   A0A2R8Q304   A0A3B3CEF9   A0A3B3CCQ1   A0A096LZH3   A0A2U9BEU2   A0A2R8Q678   A0A3B5APC7   A0A3Q3JA68   A0A1B0D6E2   A0A3Q2PNV7   A0A3B3CG71   A0A1A8FDK5   A0A3B5A2R3   A0A1A8NBL0   A0A1A8AYE3   A0A1A8S6Z0   A0A1A8J1X6   A0A1A8BIK2   A0A1A8S6R9  

Pubmed

28756777    26354079    22118469    18362917    19820115    28004739    + More
17510324    20920257    23761445    26483478    25244985    24438588    18563158    23258410    21551351    25315136    17554307    25463417    29451363    23594743    25362486    15649458    26108605    25186727    23537049   

EMBL

ODYU01005959    SOQ47387.1    NWSH01000828    PCG73965.1    KZ149926    PZC77559.1    + More
KQ459193    KPJ03028.1    KQ461072    KPJ09829.1    AGBW02014435    OWR41697.1    KQ971354    KYB26340.1    GANO01002108    JAB57763.1    UFQT01001350    SSX30161.1    GEZM01088251    JAV58277.1    GGFJ01003846    MBW52987.1    CH478219    EAT33521.1    GGFJ01003367    MBW52508.1    GGFM01008383    MBW29134.1    ADMH02001301    ETN63075.1    AXCN02001124    JXUM01067025    JXUM01067026    JXUM01067027    JXUM01067028    JXUM01067029    JXUM01067030    KQ562429    KXJ75928.1    GGFK01007972    MBW41293.1    GGFK01007809    MBW41130.1    GGFK01007086    MBW40407.1    GGFK01007020    MBW40341.1    JXUM01010513    JXUM01010514    JXUM01010515    KQ560310    KXJ83118.1    ATLV01027104    ATLV01027105    KE525423    KFB53956.1    KK113388    KFM60079.1    CVRI01000004    CRK87132.1    GFDF01009684    JAV04400.1    GG666603    EEN50251.1    KB031158    ELK00507.1    CM012441    RVE73081.1    AL807378    BX248306    AY714078    AAW49216.1    JRES01001654    KNC21114.1    APGK01036968    APGK01036969    APGK01036970    KB740945    ENN77500.1    AYCK01000329    AYCK01000330    CP026248    AWP02515.1    AJVK01025937    AJVK01025938    HAEB01010948    HAEC01006838    SBQ57475.1    HAEG01001926    SBR66232.1    HADY01021549    SBP60034.1    HAEI01011743    SBS14115.1    HAED01017220    HAEE01009437    SBR03665.1    HADZ01002389    HAEA01010189    SBP66330.1    HAEH01022431    SBS13951.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000007266    UP000192223    + More
UP000075920    UP000008820    UP000000673    UP000075886    UP000069940    UP000249989    UP000075900    UP000069272    UP000076408    UP000030765    UP000075881    UP000054359    UP000183832    UP000265000    UP000001554    UP000261480    UP000261460    UP000010552    UP000005226    UP000095301    UP000265040    UP000265200    UP000265180    UP000001038    UP000261520    UP000257160    UP000078200    UP000092445    UP000261560    UP000000437    UP000092443    UP000095300    UP000261340    UP000233200    UP000037069    UP000192220    UP000261440    UP000091820    UP000265080    UP000261420    UP000261580    UP000019118    UP000264820    UP000286642    UP000257200    UP000028760    UP000246464    UP000261400    UP000261600    UP000092462   

Pfam

PF07531   TAFH        + More
PF08788   NHR2
PF01753   zf-MYND
PF00067   p450

Interpro

IPR002893   Znf_MYND        + More
IPR003894   TAFH_NHR1       
IPR037249   TAFH/NHR1_dom_sf       
IPR014896   NHR2       
IPR013289   CBFA2T1/2/3       
IPR036396   Cyt_P450_sf       
IPR001128   Cyt_P450       
IPR017972   Cyt_P450_CS       
IPR013292   CBFA2T3       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF158553   SSF158553        + More
SSF48264   SSF48264       

Gene 3D

1.20.120.1110     1.10.630.10    

ProteinModelPortal

A0A2H1W2X5   A0A2A4JPH4   A0A2W1BR36   A0A194QBU5   A0A0N1PFR6   A0A212EJM9   + More
A0A139WEF7   A0A1W4WLX1   U5EYB2   A0A336MKV4   A0A1Y1KHN6   A0A182W2C0   A0A2M4BIW2   Q16H02   A0A2M4BI68   A0A2M3ZKS2   W5JJJ4   A0A182QQD8   A0A182GIY3   A0A182R577   A0A2M4AKI2   A0A2M4AK15   A0A2M4AI29   A0A182FVQ8   A0A2M4AHU2   A0A182GFI4   A0A182YMH0   A0A084WUR2   A0A182JYU7   A0A087T4P0   A0A1J1HI95   A0A1L8DDI8   A0A3Q2TJV8   C3ZBL4   A0A3B3WXJ5   A0A3B4F6X1   L5JNJ9   H2U0M9   A0A1I8MYU8   A0A3Q1JWW0   A0A3P9J989   A0A3P9HT63   A0A3P9L2M1   A0A3P9MDM5   H2LNE5   A0A3Q1I964   A0A3B4AYS7   A0A3Q1BR38   A0A1A9VQ65   A0A1B0ADB6   A0A3B3CEB1   A0A3B3CED4   H2U0N1   A0A3S2PY62   A0A3B3CC25   A0A2R8PVW8   A0A1A9XF01   H2U0M8   A0A1I8PZF4   A0A1I8PZH7   A0A3Q0SUZ8   A0A1I8PZJ9   A0A2K6RKK1   Q5IJ71   A0A0L0BPF6   A0A2I4ASR7   A0A3B4CJC9   A0A1A9W8E6   A0A3P8TWZ4   A0A3B4TUE1   A0A3Q4HX33   A0A3P8U2Q7   N6U771   A0A3Q2YN62   A0A3Q2XEY3   A0A1I8PZH6   A0A3Q1BN58   A0A3Q7WIV7   A0A3Q1GRI4   A0A2R8Q304   A0A3B3CEF9   A0A3B3CCQ1   A0A096LZH3   A0A2U9BEU2   A0A2R8Q678   A0A3B5APC7   A0A3Q3JA68   A0A1B0D6E2   A0A3Q2PNV7   A0A3B3CG71   A0A1A8FDK5   A0A3B5A2R3   A0A1A8NBL0   A0A1A8AYE3   A0A1A8S6Z0   A0A1A8J1X6   A0A1A8BIK2   A0A1A8S6R9  

PDB

5ECJ     E-value=4.13277e-23,     Score=268

KEGG

101742156    no KO assigned | (RefSeq) protein CBFA2T1

GO

GO:0046872   GO:0045892   GO:0003714   GO:0003700   GO:0005634   GO:0020037   GO:0016021   GO:0016705   GO:0005506   GO:0045820   GO:0001666   GO:1903715   GO:0005654   GO:0032436   GO:0008285   GO:0030851   GO:0003676   GO:0006355   GO:0003924   GO:0019538   GO:0030145   GO:0000049   GO:0005975   GO:0004553  

PANTHER

PTHR10379  

Length:

498

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00565

Exp number, first 60 AAs:

0.000580000000000001

Total prob of N-in:

0.00543

outside

1  -  498

 

 

Pi

22.362994

Theta

18.082947

Tajima's D

-1.277413

CLR

0.746689

CSRT

0.0889955502224889

Interpretation

Uncertain