Gene

KWMTBOMO12288  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009129

Annotation

PREDICTED:_trafficking_protein_particle_complex_subunit_2-like_protein_[Papilio_polytes]

Location

Bomo_Chr20(-):11522744-11525114      View in EpiBrowser

Full name

Trafficking protein particle complex subunit 2-like protein      

Location in the cell

Extracellular   Reliability : 1.275 Mitochondrial   Reliability : 1.192

CDS

ATGGCTGTGTGTGTTGCTGTTATCGGAAAAGATAACTCGCCGTTGTACATTGGTGGCATCGGCAACGACACCAGCAGCGACAATGAGCTGTCCCGGCAGTGGCTCGTGCACACGGCGCTGGACGCCCTGGAGGAGAGGCTCACCACTGCGAACCCTAACAATTCAGGAACGAACACAACCACTGCCCGAACTGATCTGCGGGACTTGTATTTAGGATTACTGTTTTCCACAGATACTCATAAAATTTACGGCTACGTCACAAATACTCGTATCAAACTAGTTCTGGTGACCAGCTCCACGTCGCCGAGCGGCAGTAACATCAGGGATGCCGAAGTAAGGACGGCGCTGCGCAGGCTGCACGCTCTGTACGCTGACGCCATATGCAATCCATTCCATTTACCCGGTGATCAAATTACTTCACCGAAATTCGACAAGCAAGTCAAGAATATAATGCTCAACAATGTTTGA

Protein

MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTTTARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYADAICNPFHLPGDQITSPKFDKQVKNIMLNNV

Description

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Subunit

Component of the multisubunit TRAPP (transport protein particle) complex, which includes at least TRAPPC2, TRAPPC2L, TRAPPC3, TRAPPC3L, TRAPPC4, TRAPPC5, TRAPPC8, TRAPPC9, TRAPPC10, TRAPPC11 and TRAPPC12. Interacts with the heterodimer TRAPPC3-TRAPPC6A. Interacts with TRAPPC6A.
Component of the multisubunit TRAPP (transport protein particle) complex, which includes at least TRAPPC2, TRAPPC2L, TRAPPC3, TRAPPC3L, TRAPPC4, TRAPPC5, TRAPPC8, TRAPPC9, TRAPPC10, TRAPPC11 and TRAPPC12. Interacts with the heterodimer TRAPPC3-TRAPPC6A (By similarity).

Similarity

Belongs to the complex I LYR family.
Belongs to the TRAPP small subunits family. Sedlin subfamily.

Keywords

Alternative splicing   Complete proteome   Cytoplasm   Endoplasmic reticulum   ER-Golgi transport   Golgi apparatus   Reference proteome   Transport  

Feature

chain  Trafficking protein particle complex subunit 2-like protein
splice variant  In isoform 2.

Uniprot

H9JHY1   A0A1E1VZF5   A0A2W1BLQ9   A0A0N1IDQ4   A0A194QC84   S4PYC7   + More
A0A2H1WSU2   A0A3S2NQ63   A0A212FJZ0   A0A2A4IVQ1   A0A2A4IV94   A0A0L7KU51   A0A0T6B7B2   A0A2P8Z3K4   A0A139WFC7   A0A1I8N305   A0A0K8TNU8   A0A067RH19   A0A1B6KUK8   A0A1B6GAH0   A0A1Y1KPK5   W8BSN6   A0A1I8Q8Q4   A0A1Q3FIA1   A0A3L8E3L1   V5I6R2   Q16QM0   A0A023EG10   A0A087SUY6   B0W852   B4J8H8   R7VEI1   A0A1B0CYJ3   A0A1L8DCE1   A0A210R5Y2   K1QLJ8   A0A1B0CVZ3   A0A158N9R3   A0A0L0CQ41   A0A0A9W9R9   A0A2A3EGB4   A0A0L8GES6   A0A0M3QUY6   A0A0K8W7U8   A0A0C9RSZ5   B4MFM0   D3TPE5   A0A293N767   A0A3R7MV48   U5EV47   A0A2R5L560   B4KRQ2   A0A1A9VD06   A0A182UJL4   F5HLX7   A0A2Y9KDD3   A0A1S3H8T3   A0A154PE80   A0A1S3CY52   F7D905   A0A1W4U5N9   B4MPD1   A0A2M3ZD48   A0A2M4AU44   W5JCQ5   A0A3B0J4X4   A0A182JVT7   K7J3L8   A1Z8I0   D3DMJ4   A0A232F086   B4QB62   A0A182LT28   B3NSK3   B4P7I0   A0A3Q7N4B3   A0A2U3VCA9   G3TL91   A0A2Y9I2N9   A0A2U3XRP3   A0A3Q7W6X9   U3FMB5   A0A287AMU1   A0A3P8UN46   A0A310SGB0   A0A0P4WGQ3   A0A3S1BHI6   A0A0B8RT98   Q9UL33-2   A0A1U7QG43   A0A2J8IWJ2   A0A1U7UL19   I2CX67   A0A2K5QUZ2   B3MET6   A0A3B4CU20   A0A1Y1KRZ3   A0A0D9S2R3   L8ITH5   A6H7F7  

Pubmed

19121390    28756777    26354079    23622113    22118469    26227816    + More
29403074    18362917    19820115    25315136    26369729    24845553    28004739    24495485    30249741    17510324    24945155    17994087    23254933    28812685    22992520    21347285    26108605    25401762    26823975    20353571    12364791    14747013    17210077    19892987    20920257    23761445    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    28648823    22936249    17550304    25243066    24487278    25476704    11042152    14702039    15616553    15489334    19416478    21269460    21525244    25319552    22751099   

EMBL

BABH01035366    GDQN01010951    JAT80103.1    KZ150040    PZC74564.1    KQ461072    + More
KPJ09822.1    KQ459193    KPJ03034.1    GAIX01003518    JAA89042.1    ODYU01010764    SOQ56077.1    RSAL01000012    RVE53455.1    AGBW02008171    OWR54065.1    NWSH01006761    PCG63262.1    NWSH01006867    PCG63204.1    JTDY01005775    KOB66640.1    LJIG01009367    KRT83222.1    PYGN01000212    PSN51075.1    KQ971352    KYB26632.1    GDAI01001802    JAI15801.1    KK852686    KDR18458.1    GEBQ01031855    GEBQ01024835    GEBQ01017250    GEBQ01015979    GEBQ01012985    GEBQ01009728    GEBQ01008794    GEBQ01005553    GEBQ01004741    GEBQ01004007    JAT08122.1    JAT15142.1    JAT22727.1    JAT23998.1    JAT26992.1    JAT30249.1    JAT31183.1    JAT34424.1    JAT35236.1    JAT35970.1    GECZ01010332    JAS59437.1    GEZM01077242    JAV63359.1    GAMC01004404    GAMC01004403    GAMC01004401    JAC02153.1    GFDL01007768    JAV27277.1    QOIP01000001    RLU27132.1    GALX01007740    JAB60726.1    CH477744    CH477492    EAT36697.1    EAT40006.1    GAPW01005797    GEHC01000341    JAC07801.1    JAV47304.1    KK112077    KFM56675.1    DS231857    EDS38677.1    CH916367    EDW02337.1    AMQN01038549    KB294359    ELU14676.1    AJVK01001918    GFDF01009943    JAV04141.1    NEDP02000186    OWF56477.1    JH817657    EKC29640.1    AJWK01031428    AJWK01031429    ADTU01009804    JRES01000182    KNC33559.1    GBHO01040341    GBRD01017352    GDHC01007175    JAG03263.1    JAG48475.1    JAQ11454.1    KZ288254    PBC30748.1    KQ422351    KOF75045.1    CP012524    ALC41479.1    GDHF01005103    JAI47211.1    GBYB01010626    JAG80393.1    CH940667    EDW57191.1    EZ423297    EZ423298    ADD19573.1    GFWV01022743    MAA47470.1    QCYY01002418    ROT70492.1    GANO01002025    JAB57846.1    GGLE01000492    MBY04618.1    CH933808    EDW08322.1    AAAB01008960    EGK97288.1    KQ434886    KZC10176.1    CH963849    EDW73970.1    GGFM01005726    MBW26477.1    GGFK01010980    MBW44301.1    ADMH02001882    ETN60660.1    OUUW01000001    SPP74592.1    AE013599    AAF58685.2    BT120160    ADB91408.1    NNAY01001475    OXU23838.1    CM000362    CM002911    EDX06595.1    KMY92951.1    AXCM01000273    CH954179    EDV56505.1    CM000158    EDW90015.1    GAMS01010728    GAMR01004819    GAMQ01001415    GAMP01010770    JAB12408.1    JAB29113.1    JAB40436.1    JAB41985.1    AEMK02000039    KQ760241    OAD61287.1    GDRN01056815    JAI65777.1    RQTK01000369    RUS80857.1    GBSH01002881    JAG66146.1    AF089106    AF161524    AK126779    AK311885    AC092384    BC011369    BC018024    BC105809    NBAG03000568    PNI14890.1    JV636212    AFJ71552.1    CH902619    EDV35550.1    GEZM01077243    JAV63358.1    AQIB01154354    JH880804    ELR58759.1    BC146228   

Proteomes

UP000005204    UP000053240    UP000053268    UP000283053    UP000007151    UP000218220    + More
UP000037510    UP000245037    UP000007266    UP000095301    UP000027135    UP000095300    UP000279307    UP000008820    UP000054359    UP000002320    UP000001070    UP000014760    UP000092462    UP000242188    UP000005408    UP000092461    UP000005205    UP000037069    UP000242457    UP000053454    UP000092553    UP000008792    UP000283509    UP000009192    UP000078200    UP000075902    UP000007062    UP000248482    UP000085678    UP000076502    UP000079169    UP000002281    UP000192221    UP000007798    UP000000673    UP000268350    UP000075881    UP000002358    UP000000803    UP000215335    UP000000304    UP000075883    UP000008711    UP000002282    UP000286641    UP000245340    UP000007646    UP000248481    UP000245341    UP000286642    UP000008227    UP000265120    UP000271974    UP000005640    UP000189706    UP000189704    UP000233040    UP000007801    UP000261440    UP000029965    UP000009136   

PRIDE

H9JHY1    A1Z8I0    Q9UL33    A6H7F7   

Pfam

PF04628   Sedlin_N        + More
PF00338   Ribosomal_S10
PF05347   Complex1_LYR

Interpro

IPR006722   Sedlin        + More
IPR011012   Longin-like_dom_sf       
IPR007233   TRAPPC       
IPR036838   Ribosomal_S10_dom_sf       
IPR027486   Ribosomal_S10_dom       
IPR005729   Ribosomal_S10_euk/arc       
IPR001848   Ribosomal_S10       
IPR008011   Complex1_LYR       

SUPFAM

SSF64356   SSF64356        + More
SSF54999   SSF54999       

Gene 3D

3.30.70.600    

ProteinModelPortal

H9JHY1   A0A1E1VZF5   A0A2W1BLQ9   A0A0N1IDQ4   A0A194QC84   S4PYC7   + More
A0A2H1WSU2   A0A3S2NQ63   A0A212FJZ0   A0A2A4IVQ1   A0A2A4IV94   A0A0L7KU51   A0A0T6B7B2   A0A2P8Z3K4   A0A139WFC7   A0A1I8N305   A0A0K8TNU8   A0A067RH19   A0A1B6KUK8   A0A1B6GAH0   A0A1Y1KPK5   W8BSN6   A0A1I8Q8Q4   A0A1Q3FIA1   A0A3L8E3L1   V5I6R2   Q16QM0   A0A023EG10   A0A087SUY6   B0W852   B4J8H8   R7VEI1   A0A1B0CYJ3   A0A1L8DCE1   A0A210R5Y2   K1QLJ8   A0A1B0CVZ3   A0A158N9R3   A0A0L0CQ41   A0A0A9W9R9   A0A2A3EGB4   A0A0L8GES6   A0A0M3QUY6   A0A0K8W7U8   A0A0C9RSZ5   B4MFM0   D3TPE5   A0A293N767   A0A3R7MV48   U5EV47   A0A2R5L560   B4KRQ2   A0A1A9VD06   A0A182UJL4   F5HLX7   A0A2Y9KDD3   A0A1S3H8T3   A0A154PE80   A0A1S3CY52   F7D905   A0A1W4U5N9   B4MPD1   A0A2M3ZD48   A0A2M4AU44   W5JCQ5   A0A3B0J4X4   A0A182JVT7   K7J3L8   A1Z8I0   D3DMJ4   A0A232F086   B4QB62   A0A182LT28   B3NSK3   B4P7I0   A0A3Q7N4B3   A0A2U3VCA9   G3TL91   A0A2Y9I2N9   A0A2U3XRP3   A0A3Q7W6X9   U3FMB5   A0A287AMU1   A0A3P8UN46   A0A310SGB0   A0A0P4WGQ3   A0A3S1BHI6   A0A0B8RT98   Q9UL33-2   A0A1U7QG43   A0A2J8IWJ2   A0A1U7UL19   I2CX67   A0A2K5QUZ2   B3MET6   A0A3B4CU20   A0A1Y1KRZ3   A0A0D9S2R3   L8ITH5   A6H7F7  

PDB

2J3W     E-value=0.064345,     Score=79

KEGG

101739360    K20301 trafficking protein particle complex subunit 2 | (RefSeq) trafficking protein particle comple

GO

GO:0005737   GO:0030008   GO:0006888   GO:0015935   GO:0003735   GO:0006412   GO:0043231   GO:0005829   GO:0000139   GO:0051259   GO:0005783   GO:0048471   GO:0048208   GO:0005794   GO:0006810   GO:0005622   GO:0003924   GO:0019538   GO:0030145   GO:0000049   GO:0005975   GO:0004553   GO:0016192  

PANTHER

PTHR12403   PTHR11700  

Subcellular location

Cytoplasm  
Perinuclear region  
Endoplasmic reticulum  
Golgi apparatus  

Length:

155

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02332

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.20391

outside

1  -  155

 

 

Pi

30.67987

Theta

25.448219

Tajima's D

0.657755

CLR

0.026904

CSRT

0.569421528923554

Interpretation

Uncertain