Gene

KWMTBOMO12287  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009130

Annotation

ribosomal_protein_S20_[Bombyx_mori]

Location

Bomo_Chr20(-):11518093-11521394      View in EpiBrowser

Full name

30S ribosomal protein S10      

Location in the cell

Mitochondrial   Reliability : 1.418 Nuclear   Reliability : 1.549

CDS

ATGGCAGCCGCTGTAGTGTCAGGCAAAGACATTGAGAAACCCCAGGCAGAGGTCTCCCCTATCCACCGCATCAGGATCACTCTTACTTCACGCAATGTGCGCTCGCTCGAGAAGGTCTGTGCTGACCTAATCAATGGAGCCAAGAAACAGAAGCTGCGTGTAAAGGGCCCAGTCCGCATGCCAACCAAGATCCTGCGTATCACCACCCGTAAAACTCCTTGTGGTGAAGGTTCAAAGACCTGGGATCGTTTTCAGATGAGAATCCACAAGAGAGTGATCGACCTACACTCTCCCTCTGAAATCGTGAAACAGATCACCTCAATTAACATCGAGCCCGGTGTAGAGGTTGAGGTGACCATCGCCGACGCGTAG

Protein

MAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA

Description

Involved in the binding of tRNA to the ribosomes.

Subunit

Part of the 30S ribosomal subunit.

Similarity

Belongs to the universal ribosomal protein uS10 family.

Uniprot

G0ZED4   D1LYK1   Q5UAM2   A0A2A4AZQ6   A0A2W1BLN3   I4DM53   + More
Q6EV24   A0A0K8T8Z0   I4DIG7   A0A291FJ90   A0A1B2XL54   E7DZ15   Q962Q9   A0A3S2LGN6   A0A212FK17   A0A3G1T173   S4NT02   Q6F441   A0A0L7KU51   A0A2H1WSU2   A0A194QDJ0   A8CAG6   A0A1L8DRS3   A8CWE6   T1DJ28   B0WHH1   Q1HRS9   Q5MIS2   A0A1Q3F3Y0   A0A182QQM0   A0A182GVB3   A0A182YA48   A0A182M0M8   A0A182P8F8   A0A182V5X1   A0A182K0Z2   A0A182WCV5   A0A182TT85   A0A182LQ47   A0A182X1T4   Q7Q8S2   Q06DG3   A0A182HFP9   A0A336MRB5   T1DNI2   A0A2M3ZF63   A0A2M3ZYL9   B6DDS4   A0A182FV13   A0A182MYF0   A0A336MBF5   A0A067RNS3   A0A2P8ZCE2   R4V0M3   U5EME6   A0A1Y1KQ57   Q6EUX8   A0A1I8PLM8   T1PEZ2   A0A0J7NZK4   A0A286NL59   E2B064   A0A1W4X8D9   A0A1B6MFW4   A0A1B6F6B8   A0A151I2N7   A0A158NQE6   A0A1L8EHA2   D6WT42   E9IDH6   Q56FG0   A0A195CQ04   C4N197   D1M7Z6   E2B3F6   A0A1B6JEW5   V5IAG0   A0A1D1YZT5   A0A0L0CLX0   A0A2A3ETZ6   A0A087ZP70   A0A195DVQ7   A0A0L7R2B8   A0A154P7W6   Q4GXP4   U4ULS5   A0A1B6CVB7   A0A0T6BFN6   E0W0E8   J3JU60   A0A240SWM6   A0A1A9VDQ8   A0A1B0B2Y2   A0A240SX81   A0A1A9W5Q2   D3TMY7   T1H7B5   A0A3L8DHN4   A0A026WVK3   A0A310SFE9  

Pubmed

19121390    28756777    22651552    14668217    22118469    23622113    + More
26227816    26354079    17760985    18194529    24330624    17204158    17510324    17244540    24945155    26483478    25244985    20966253    12364791    14747013    17210077    17244545    19178717    20920257    23761445    24845553    29403074    28004739    25315136    20798317    21347285    18362917    19820115    21282665    19576987    26108605    23537049    20566863    22516182    20353571    30249741    24508170   

EMBL

JF265012    AEL28843.1    GU084275    ACY95308.1    BABH01035366    AY769336    + More
AAV34878.1    NWMT01000022    PCD01195.1    KZ150040    PZC74565.1    AK402371    BAM18993.1    AJ783763    CAH04126.1    GBRD01003823    JAG61998.1    AK401085    BAM17707.1    KY039977    ATG34156.1    KX230118    NWSH01006867    NWSH01006761    AOD62627.1    PCG63203.1    PCG63261.1    HQ424718    ADT80662.1    AF400217    AAK92189.1    RSAL01000012    RVE53454.1    AGBW02008171    OWR54066.1    MG846879    AXY94731.1    GAIX01012366    JAA80194.1    AB180449    BAD26693.1    JTDY01005775    KOB66640.1    ODYU01010764    SOQ56077.1    KQ459193    KPJ03035.1    EU047545    ABV44755.1    GFDF01004921    JAV09163.1    AJWK01003889    EU124622    ABV60340.1    GALA01000561    JAA94291.1    DS231936    EDS27749.1    DQ440015    CH477586    ABF18048.1    EAT38623.1    AY826138    GAPW01006129    GAPW01006128    GAPW01006127    GAPW01006126    AAV90710.1    JAC07469.1    GFDL01012781    JAV22264.1    AXCN02001048    JXUM01090670    KQ563856    KXJ73160.1    AXCM01000499    AAAB01008933    EAA09966.3    DQ910362    ABI83784.1    APCN01005563    UFQT01001751    UFQT01003741    SSX31659.1    SSX35242.1    GAMD01002850    JAA98740.1    GGFM01006411    MBW27162.1    GGFK01000345    MBW33666.1    EU934284    ADMH02002040    ACI30062.1    ETN59802.1    UFQS01000848    UFQT01000848    SSX07283.1    SSX27625.1    KK852513    KDR22255.1    PYGN01000106    PSN54167.1    KC632353    AGM32167.1    GANO01001064    JAB58807.1    GEZM01081625    JAV61576.1    AJ783893    CAH04341.1    KA647367    AFP61996.1    LBMM01000668    KMQ97830.1    KX809581    ASZ69802.1    GL444408    EFN60921.1    GEBQ01005173    JAT34804.1    GECZ01024138    JAS45631.1    KQ976539    KYM81301.1    ADTU01023179    GFDG01000697    JAV18102.1    KQ971354    EFA05867.1    GL762454    EFZ21369.1    AY961540    AAX62442.1    KQ977444    KYN02710.1    EZ048870    ACN69162.1    GU120420    ACY71270.1    GL445323    EFN89834.1    GECU01009962    JAS97744.1    GALX01001250    JAB67216.1    GDJX01007820    JAT60116.1    JRES01000310    KNC32424.1    KZ288186    PBC34742.1    KQ980322    KYN16639.1    KQ414666    KOC65022.1    KQ434839    KZC08015.1    AM048979    CAJ17213.1    KB632263    ERL90950.1    GEDC01019819    JAS17479.1    LJIG01001237    KRT85703.1    DS235858    EEB19104.1    BT126772    AEE61734.1    JXJN01007738    CCAG010013281    EZ422789    ADD19065.1    QOIP01000008    RLU19954.1    KK107085    EZA60047.1    KQ765071    OAD54148.1   

Proteomes

UP000005204    UP000243750    UP000218220    UP000283053    UP000007151    UP000037510    + More
UP000053268    UP000092461    UP000002320    UP000008820    UP000075886    UP000069940    UP000249989    UP000076408    UP000075883    UP000075885    UP000075903    UP000075881    UP000075920    UP000075902    UP000075882    UP000076407    UP000007062    UP000075900    UP000075840    UP000000673    UP000069272    UP000075884    UP000027135    UP000245037    UP000095300    UP000095301    UP000036403    UP000000311    UP000192223    UP000078540    UP000005205    UP000007266    UP000078542    UP000008237    UP000037069    UP000242457    UP000005203    UP000078492    UP000053825    UP000076502    UP000030742    UP000009046    UP000092443    UP000078200    UP000092460    UP000092445    UP000091820    UP000092444    UP000015102    UP000279307    UP000053097   

PRIDE

Q5UAM2    A0A087ZP70   

Pfam

PF00338   Ribosomal_S10        + More
PF04628   Sedlin_N

Interpro

IPR005729   Ribosomal_S10_euk/arc        + More
IPR001848   Ribosomal_S10       
IPR036838   Ribosomal_S10_dom_sf       
IPR027486   Ribosomal_S10_dom       
IPR011012   Longin-like_dom_sf       
IPR006722   Sedlin       
IPR018268   Ribosomal_S10_CS       

SUPFAM

SSF54999   SSF54999        + More
SSF64356   SSF64356       

Gene 3D

3.30.70.600    

ProteinModelPortal

G0ZED4   D1LYK1   Q5UAM2   A0A2A4AZQ6   A0A2W1BLN3   I4DM53   + More
Q6EV24   A0A0K8T8Z0   I4DIG7   A0A291FJ90   A0A1B2XL54   E7DZ15   Q962Q9   A0A3S2LGN6   A0A212FK17   A0A3G1T173   S4NT02   Q6F441   A0A0L7KU51   A0A2H1WSU2   A0A194QDJ0   A8CAG6   A0A1L8DRS3   A8CWE6   T1DJ28   B0WHH1   Q1HRS9   Q5MIS2   A0A1Q3F3Y0   A0A182QQM0   A0A182GVB3   A0A182YA48   A0A182M0M8   A0A182P8F8   A0A182V5X1   A0A182K0Z2   A0A182WCV5   A0A182TT85   A0A182LQ47   A0A182X1T4   Q7Q8S2   Q06DG3   A0A182HFP9   A0A336MRB5   T1DNI2   A0A2M3ZF63   A0A2M3ZYL9   B6DDS4   A0A182FV13   A0A182MYF0   A0A336MBF5   A0A067RNS3   A0A2P8ZCE2   R4V0M3   U5EME6   A0A1Y1KQ57   Q6EUX8   A0A1I8PLM8   T1PEZ2   A0A0J7NZK4   A0A286NL59   E2B064   A0A1W4X8D9   A0A1B6MFW4   A0A1B6F6B8   A0A151I2N7   A0A158NQE6   A0A1L8EHA2   D6WT42   E9IDH6   Q56FG0   A0A195CQ04   C4N197   D1M7Z6   E2B3F6   A0A1B6JEW5   V5IAG0   A0A1D1YZT5   A0A0L0CLX0   A0A2A3ETZ6   A0A087ZP70   A0A195DVQ7   A0A0L7R2B8   A0A154P7W6   Q4GXP4   U4ULS5   A0A1B6CVB7   A0A0T6BFN6   E0W0E8   J3JU60   A0A240SWM6   A0A1A9VDQ8   A0A1B0B2Y2   A0A240SX81   A0A1A9W5Q2   D3TMY7   T1H7B5   A0A3L8DHN4   A0A026WVK3   A0A310SFE9  

PDB

4V6W     E-value=4.33186e-45,     Score=450

KEGG

778514    K02969 small subunit ribosomal protein S20e | (RefSeq) RpS20; ribosomal protein S20

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0015935   GO:0000049   GO:0005840   GO:0006888   GO:0022627   GO:0003723   GO:0003743   GO:0003924   GO:0019538   GO:0030145   GO:0005975   GO:0004553  

PANTHER

PTHR11700  

Length:

123

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.23441

outside

1  -  123

 

 

Pi

27.146421

Theta

24.2879

Tajima's D

0.278146

CLR

0

CSRT

0.451127443627819

Interpretation

Uncertain