Gene

KWMTBOMO12283

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr20(+):11420155-11421042      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2       + More
Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM      

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R2
Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM

Location in the cell

Mitochondrial   Reliability : 2.62

CDS

ATGAGGGAGCGATGCGCGCAGATAACCGGACGGGACTTCGTGCAGTTCGTGCACACGCACATCAACGCCCTCCCATCCCGCATTCGCGGATCGAGAGGGCGTAGAGGTGGGAGTGAGTCGGCGTTGACCTGCCGTGCTGGTTGCAGGGTCAGGGAGACGACGGCTCACATCCTACAGCAGTGTCACAGAACACACGGCGGCCGGATTCTACGACATAACAAGATTGTCTCTTTCGTGGCGAAAGCTATGGAAGAGAACAAGTGGACGGTTGAGCTGGAGCCTAGGCTACGAGCATCGGTGGGTCTCCGTAAGCCGGATATTATCGCCTCCAGGGATGGTGTCGGAATGATCGTGGACGTGCAGGTCGTCTCGGGCCAGCGGTCGCTTGATGAGCTCCACCGTGAGAAACGTAATAAATACGGGAATCACGGGGAGCTGGTTGAGTTGGTCGCAGGTAGACTAGGACTTCCGAAAGCTGAGTGTGTGCGAGCCACTTCGTGCACGATATCTTGGAGGGGAGTATGGAGCCTGGCTTCTTTTAAGGAGTTGAGGACCATAATCGGGCTTCGGGAACCGACACTGCAGACTGTTACAATCTTAGTGTTGAGAGGATCGCATATGAACTGGACCAGGTTCAATCAGATGACGTCCGTCATGGGGGGCGGCATTGGTTGA

Protein

MRERCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGSESALTCRAGCRVRETTAHILQQCHRTHGGRILRHNKIVSFVAKAMEENKWTVELEPRLRASVGLRKPDIIASRDGVGMIVDVQVVSGQRSLDELHREKRNKYGNHGELVELVAGRLGLPKAECVRATSCTISWRGVWSLASFKELRTIIGLREPTLQTVTILVLRGSHMNWTRFNQMTSVMGGGIG

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger   Aspartyl protease   Protease  

Feature

chain  Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Uniprot

Q8MY64   V9H052   Q5K671   A0A2W1BCH3   A0A023EX97   A0A0C9QX33   + More
A0A0J7KIZ7   O44320   A0A139W9T2   B2D275   A0A139W963   A0A293LGQ3   A0A0J7N6L9   A0A1Z5L9B1   K7JPM5   K7JR53   A0A1A9VZG3   A0A1Z5LEY2   A0A293LFK9   A0A1Z5KXL3   K7JCX5   B8Y0J4   Q03278   L7M1A0   A0A1Z5L6R9   A0A096XIE1   A0A293M552   V9H035   V9H0F0   V9H0D3   A0A0J7KIJ3   V9H043   A0A023EXT5   A0A0R4WRV8   A0A131YXA3   A0A2S2Q7J7   A0A1E1XSR0   K7JWT5   Q49P04   A0A023EX96   K7JWL4   V9H094   A0A224XHH5   G3MJ36   O44323   A0A131Z2I9   P16423   V9GZB3   A0A1E1X328   K7JX42   O44319   J9L0V1   A0A1E1XIZ0   Q3C2H3   P91702   Q49P03   A0A1A9YSH1   J9M3R0   A0A0J7KEX5   G3MGI9   P91719   O44316   P91603   O02576   P91710   I7B004   A0A1E1X218   A0A226CYC1   A0A077B0I4   Q03279   P91606   Q49P02   L7LUB5   A0A146LEJ1   I7A3V0   I7AEJ4   I7B911   J9LE19   Q3C2G5   C6F3W3   Q76IP0   A0A0K8S790   A0A2H1CBV9   I7BCK2  

Pubmed

14999096    2439905    28756777    25474469    18362917    19820115    + More
18725333    28528879    20075255    19350401    8383793    25576852    7713424    26830274    29209593    16164602    22216098    9515960    10331276    1690812    28503490    16014872    9402733    9927458    22564473    26823975    12949131   

EMBL

AB076841    BAC01114.1    M16558    AAB59214.1    AF436853    AAQ04479.1    + More
KZ150483    PZC70716.1    GBBI01004849    JAC13863.1    GBYB01008309    JAG78076.1    LBMM01006940    KMQ90176.1    AF015816    AAB94040.1    KQ971997    KYB24671.1    EU574809    ACB70316.1    KQ972640    KXZ75830.1    GFWV01002964    MAA27694.1    LBMM01009160    KMQ88340.1    GFJQ02003336    JAW03634.1    AAZX01024756    AAZX01024918    AAZX01002322    GFJQ02001120    JAW05850.1    GFWV01001919    MAA26649.1    GFJQ02007114    JAV99855.1    AAZX01010802    AAZX01015897    FJ461304    ACJ71597.1    L00950    GACK01007407    JAA57627.1    GFJQ02004269    JAW02701.1    KF925878    AHN53448.1    GFWV01010717    MAA35446.1    U13035    AAB60229.1    U13032    AAB60226.1    U13031    AAB60225.1    LBMM01007077    KMQ90064.1    U13033    AAB60227.1    GBBI01004906    JAC13806.1    JQ082370    AFM44926.1    GEDV01005279    JAP83278.1    GGMS01004512    MBY73715.1    GFAA01001120    JAU02315.1    AAZX01004801    AAZX01023289    AY682792    AAV85443.1    GBBI01004905    JAC13807.1    AAZX01023287    U13034    AAB60228.1    GFTR01008394    JAW08032.1    JO841887    AEO33504.1    AF015819    AAC34906.1    GEDV01003881    JAP84676.1    X51967    U13640    AAA21258.1    GFAC01005513    JAT93675.1    AAZX01023288    AF015815    AAC34903.1    ABLF02012459    ABLF02012460    GFAC01000014    JAT99174.1    AB201408    BAE46603.1    U81816    AAB41011.1    AY682793    AAV85444.1    ABLF02003433    LBMM01008531    KMQ88807.1    JO840990    AEO32607.1    U81811    AAB41015.1    AF015685    AAB94032.1    U81809    AAB41003.1    U81820    AAB41012.1    U81814    AAB41013.1    JN937621    AFO20000.1    GFAC01005869    JAT93319.1    LNIX01000056    OXA37477.1    KJ958674    AIL01110.1    L00951    U81810    AAB41004.1    AY682794    AAV85445.1    GACK01009629    JAA55405.1    GDHC01013113    JAQ05516.1    JN937619    AFO19998.1    JN937617    AFO19996.1    JN937620    AFO19999.1    ABLF02008889    AB201416    BAE46611.1    EU854578    ACJ46647.1    AB097122    BAC82590.1    GBRD01016679    JAG49148.1    KZ430017    PIS84891.1    JN937618    AFO19997.1   

Proteomes

UP000036403    UP000007266    UP000002358    UP000091820    UP000007819    UP000092443    + More
UP000198287   

PRIDE

Q8MY64    V9H052    Q5K671    Q03278    Q49P04    P16423    + More

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR013087   Znf_C2H2_type       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       

SUPFAM

SSF50630   SSF50630       

ProteinModelPortal

Q8MY64   V9H052   Q5K671   A0A2W1BCH3   A0A023EX97   A0A0C9QX33   + More
A0A0J7KIZ7   O44320   A0A139W9T2   B2D275   A0A139W963   A0A293LGQ3   A0A0J7N6L9   A0A1Z5L9B1   K7JPM5   K7JR53   A0A1A9VZG3   A0A1Z5LEY2   A0A293LFK9   A0A1Z5KXL3   K7JCX5   B8Y0J4   Q03278   L7M1A0   A0A1Z5L6R9   A0A096XIE1   A0A293M552   V9H035   V9H0F0   V9H0D3   A0A0J7KIJ3   V9H043   A0A023EXT5   A0A0R4WRV8   A0A131YXA3   A0A2S2Q7J7   A0A1E1XSR0   K7JWT5   Q49P04   A0A023EX96   K7JWL4   V9H094   A0A224XHH5   G3MJ36   O44323   A0A131Z2I9   P16423   V9GZB3   A0A1E1X328   K7JX42   O44319   J9L0V1   A0A1E1XIZ0   Q3C2H3   P91702   Q49P03   A0A1A9YSH1   J9M3R0   A0A0J7KEX5   G3MGI9   P91719   O44316   P91603   O02576   P91710   I7B004   A0A1E1X218   A0A226CYC1   A0A077B0I4   Q03279   P91606   Q49P02   L7LUB5   A0A146LEJ1   I7A3V0   I7AEJ4   I7B911   J9LE19   Q3C2G5   C6F3W3   Q76IP0   A0A0K8S790   A0A2H1CBV9   I7BCK2  

KEGG

101741295    K19404 phosphatidic acid-selective phospholipase A1 [EC:3.1.1.-] | (RefSeq) lipase member H-B-like

GO

GO:0003964   GO:0003676   GO:0004519   GO:0046872   GO:0004190   GO:0008270  

Length:

224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02794

Exp number, first 60 AAs:

0.00162

Total prob of N-in:

0.22467

outside

1  -  224

 

 

Pi

11.924621

Theta

15.947436

Tajima's D

-1.112182

CLR

3.192031

CSRT

0.11764411779411

Interpretation

Uncertain