Silkworm Genome Informatics Database

Gene

KWMTBOMO12276

Pre Gene Modal

BGIBMGA009151

Annotation

PREDICTED:_rhophilin-2-B-like_isoform_X3_[Plutella_xylostella]

Location

Bomo_Chr20(+):11293205-11325685 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.01

CDS

ATGCCAGGCTCTGACCCTCGGGTGGCGACATGTCGCGGGCGACTGCAGACCAGGCGGTGTCAACTGAACCAAGAGATCAATAAGGAGCTGAGGCTACGGGCTGGCGCTGAAAACCTGTTCAAGGCAACAACGAACAGAAAATTGCGGGAAACCGTAGCACTGGAGCTGAGCTTCGTCAACTCCAACCTCCAACTCCTCAAAGAGCAGCTGGCAGAACTGAACTCCTCCGTCGAACTCTACCAGAGCGATAGCAAAGAATGCGTAATGCCAATGATCCCTCTCGGCCTGAAGGAGACGAAGGAGGTGGACTTCAGGGACCCGTTCAAGGACTTCATCCTGGAGCATTACAGCGAGGACGCGGCGCACTACGAGGACGCCATCTCCGACTTTATGGACATGAGACAAGCAATCCGGACCCCCGTGCGCTCGACGGCAGGAGTTGCCCTGCTCTTCAAGTACTACAACCAGCTGTACTACATCGAGAGGCGGTTCTTCCCGCCGGACCGGTCCCTGGGCGTCTACTTCGAGTGGTTCGATTCATTAACAGGAGTCCCATCGTGTCAGCGAACAGTGGCTTTTGAGAAAGCATGTGTCTTGTTCAACATTGCTGGCATTTACACACAGATCGGCGCTAAACAGGAGCGCAGTCGTTGCGCCGGGCTGGACGGCGCAGTGGACGCGCTGCTGCGTGCGGCCGGCGCGCTCCGGCACATCCACGAGAACTTCACCAACGCGCCCTCGGTGGACCTCGCCGCAGACACGCTTCTCGTCCTCGGCACCCTCATGACGGCTCAAGCCCGCGAGTGTCTGCTGGAGAAGCTGCAGCTGCAGGCGGGGGGCGAGGCGGGTGACGTCACGCTGGACCTGGCGCAGGAGAGCGCGCACCTGGCGCACACCTACCGACAGCTGCACGCCAAGATGCAAACCGAGGGTGTCTTCAACTACGTGCCATACTCGTGGGTCTCCCTGGTCCACGTCAAGACTGAGTTCTACCACGCGCTCGCGCACCAGTACTGCGGCACGGCGCTGCTCCACTCCACTCCCTCTGCAGAGATGAGGGAGAGACTGGACGCGCTGTACTCCAATGAGAACGACAGGAGTCAGCAGAACGGTAACTCCATATTGAAAGAGCAAGACTATGACCTCACAGCCCTGGGGAGGGCGCATCTAGCCGAGGCCGTCGCCCTCTATGAAGAAGCGTTAAGACTACAAAGAATGTGCAGAGAGTTACGGGACAAGGAAGCGCTGTCCGTGGTGGTGCGAGCTCATTTGGAGCAGGTGGCGCAAGAACAGAACCCGAAGGCGGAACAAAACGACTTCACGGATCTACTGGACGCACCCAACATCACGCCGTCATCGAAATTTCAACTGGCTCTTACACCTCCGGACTTCTCGCAATACCGAGTCGAGGACTTGTTCAAATCCCTCGGACCCATCGCGGTTTTCTCAGCCAAGCGGCACTGGAGCGCTCCTAGATTAGTCCAGCTCCAGAAAAACACCAGAAGAAGAAACTCCAGAATCGAAGACCCAGACCAGGAGAGACTAAAAAGATCGAACGACAAAAGGGACAGATCAGAAGACAACAGCGCCTACTACAACCAGAACAGAAGCGACGAGAAGCATTCGGAAGATTACGAGAAGAAACTCCTCAAAGTGACGAAACAGAACGGGATATACATAAACAGCTATAATAACAATTTCGAATACCACCCCAAAGTCTTGGACTACGAGTCGAAATACGATTATAGGGCTGAGAAAGGGGACAGAGAGAACGGGAAGAAAAATGGGAGGGAGAGAAGGAAAGACCAGCTGAGGAGGGCGGCCAGTGAATACAATGTCTCTGGTAAAGACGACGAGGGGTTCGGGTTCTCCGTGAGAGGGGACGCCCCGGTTGTCATAGCCGCCGTCGAACCCAACTCCTTGGCAGATGTTGGGGGAATGCGGGAAGGAGATTTCATTATCTCGGTCGGTGACGAGGATGTCAAGTGGAGTTCACACGATGAGGTCGTGAGGCTGATACAGCAGGCCGCGGACACGCTCACCTTGAGGCTTGCGACGCCCATGGATAAGAGCTCCATCAAGCTGCCCCCCGCCGCGGCGCGACCTCCCCCCTCCAGCGAGGGCTCGGTGTCAGCGGCCTCCAGCGCCTCCAGTGGCTCCTCCCGCGCCACCCCGCGTCCCGTCCCCCGCGCCGCCGCCCCGCGCCGCGCCCCTTCCTGGAACCCCTTCCGCCGGCACTCGTCCCGGGACAGCAGCGCGCACCGCGCCGACCACAACGTCATATTCAGATAA

Protein

MPGSDPRVATCRGRLQTRRCQLNQEINKELRLRAGAENLFKATTNRKLRETVALELSFVNSNLQLLKEQLAELNSSVELYQSDSKECVMPMIPLGLKETKEVDFRDPFKDFILEHYSEDAAHYEDAISDFMDMRQAIRTPVRSTAGVALLFKYYNQLYYIERRFFPPDRSLGVYFEWFDSLTGVPSCQRTVAFEKACVLFNIAGIYTQIGAKQERSRCAGLDGAVDALLRAAGALRHIHENFTNAPSVDLAADTLLVLGTLMTAQARECLLEKLQLQAGGEAGDVTLDLAQESAHLAHTYRQLHAKMQTEGVFNYVPYSWVSLVHVKTEFYHALAHQYCGTALLHSTPSAEMRERLDALYSNENDRSQQNGNSILKEQDYDLTALGRAHLAEAVALYEEALRLQRMCRELRDKEALSVVVRAHLEQVAQEQNPKAEQNDFTDLLDAPNITPSSKFQLALTPPDFSQYRVEDLFKSLGPIAVFSAKRHWSAPRLVQLQKNTRRRNSRIEDPDQERLKRSNDKRDRSEDNSAYYNQNRSDEKHSEDYEKKLLKVTKQNGIYINSYNNNFEYHPKVLDYESKYDYRAEKGDRENGKKNGRERRKDQLRRAASEYNVSGKDDEGFGFSVRGDAPVVIAAVEPNSLADVGGMREGDFIISVGDEDVKWSSHDEVVRLIQQAADTLTLRLATPMDKSSIKLPPAAARPPPSSEGSVSAASSASSGSSRATPRPVPRAAAPRRAPSWNPFRRHSSRDSSAHRADHNVIFR

Uniprot

H9JI03 A0A1E1WU98 A0A2W1BLR9 A0A194QDK3 A0A2A4JJ85 A0A212F8H0 + More
A0A2H1WQS2 A0A0N8ES15 A0A182W651 A0A182R276 A0A1L8DN36 A0A2M3ZFF5 A0A182XY21 A0A182JA29 Q7QF06 Q0IFR3 A0A182PZM5

Pubmed

19121390 28756777 26354079 22118469 26999592 25244985 + More
12364791 17510324

EMBL

BABH01035344 BABH01035345 BABH01035346 BABH01035347 GDQN01000510 JAT90544.1 + More
KZ150040 PZC74574.1 KQ459193 KPJ03045.1 NWSH01001382 PCG71462.1 AGBW02009721 OWR50042.1 ODYU01010343 SOQ55378.1 GDUN01000730 JAN95189.1 GFDF01006206 JAV07878.1 GGFM01006482 MBW27233.1 AAAB01008846 EAA06416.5 CH477294 EAT44472.1 AXCN02001229

Proteomes

UP000005204 UP000053268 UP000218220 UP000007151 UP000075920 UP000075900 + More
UP000076408 UP000075880 UP000007062 UP000008820 UP000075886

PRIDE

H9JI03

Pfam

PF03097   BRO1        + More
PF00595   PDZ
PF02185   HR1
PF17820   PDZ_6

Interpro

IPR001478   PDZ        + More
IPR036034   PDZ_sf
IPR038499   BRO1_sf
IPR004328   BRO1_dom
IPR011072   HR1_rho-bd
IPR036274   HR1_rpt_sf
IPR041489   PDZ_6

SUPFAM

SSF50156 SSF50156 + More
SSF46585 SSF46585

Gene 3D

1.25.40.280

ProteinModelPortal

H9JI03 A0A1E1WU98 A0A2W1BLR9 A0A194QDK3 A0A2A4JJ85 A0A212F8H0 + More
A0A2H1WQS2 A0A0N8ES15 A0A182W651 A0A182R276 A0A1L8DN36 A0A2M3ZFF5 A0A182XY21 A0A182JA29 Q7QF06 Q0IFR3 A0A182PZM5

PDB

3RAU E-value=8.49142e-26, Score=293

KEGG

101738210 no KO assigned | (RefSeq) rhophilin-2

GO

GO:0007165 GO:0016021 GO:0005515 GO:0006508 GO:0005737 GO:0008235 GO:0019538 GO:0030145 GO:0000049 GO:0005975 GO:0004553

Length:

763

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10299

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00524

outside

1 - 763

Pi

24.063967

Theta

24.856552

Tajima's D

-0.663737

CLR

1.186673

CSRT

0.207689615519224

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics