Gene

KWMTBOMO12274

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr20(-):11221026-11225804      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.021

CDS

ATGTCATCGTCACGTGGAACAGTGGCGGCACCAGCGCCTTCAAAAGCCACAGTGACCAAAGTGGGTGCAGCACCCGCGACGCGCGCTTTGGCTAACTTGGCCGCACCGGTCAAGTCTGCTAGCAGGCGAGTGCATGCTCAGCCCGCAAGGCCGCCGACCGCCGCTCCTGCCCCACTCCAGCCAGCAAAAGCGGGGTCTGGAAGGAGTCGCGCTAAGCAGAAGAAGGGCCTGAACGCCGCCAAGCAGGCGCAGACCCCCCAGCCCCGTCCGCTACCATCCGCCCCGTCCAACATGAACGAGGCGTGGACCACAGTGGTGAGGCGGGGTGGAAGGAAAACACAAACCTCGCTTGACCCTCGGCCCGTCCTTGTGGCCGCCGCTCCCCAGACTATGGGTCGAGAGGCAGCTAGGACAAAAAAGAAAGGGCGGAAGTCAAGGAAACCGCGCGCCCCACGGTCGGCGGCAGTAGTTTTAGAGCTGCTGCCGGCTGCGAAGGAAAAAGGCTTCACTTACGGGGAGGTGATGGCCCGGGCGCGCTGTAGCGTTGATGTAGACGCTATAGGCGTAGAGGGTGGCATCCGAGTCCGGCACACAGCTAACGGGGCTCGGCTGCTTGAATGTCCCGGTGCCGACTCCGGCGCGGCTGCAGACAGACTGGCGGCCCGGCTTCGCGAAGTCCTGCCGGACCCGGAAGTCGTGCGAATCGAGAGGCCCGTCAAGATGGCAGAGATTAAGGTGACGGGCCTGGATGAGTGCGCTACTCAGATGGAAGTGGCCGCCGCTATTGCATCGCAGGGCAACTGCGCCCTCGCACAAGTGAAGGTGGGAGAGCTCCGGAGTTGTTACTCTGGGGCTTTCACCGTGTGGGCGCGTTGCCCCGTGCAGGCGGCCACCCTGTTGGCCACGCCTCCACAAGGTCGGCCTGCCGACTCGCCGGGGAGGCTGCGCGTGGGTTGGGTGATAGCCCACGTGCAGCTGCAGGAGGCACGTCCATGGCGATGCCTCCGGTGCTTTGGCACCGGGCACGGCCTCGCCAAGTGCCCGTCGGCTGTGGATCGCAGCGGACTTTGCTTCCGTTGCTGTCAGCCCGGACACAAGGCAGCCTCCTGCACCGCTGCAACACCGCACTGCGTGTTGTGTGATGCAGCGAAACGGCGGGCCGATCATCGGGCCGGGGGTCCGGCCTGTCTTTCCGCACCCTCCTCCACAAAGAGGAGGCGTGGCGGGAAAAAGAAGAAAAAGTCAGAGGAAGAGCCGGCTGCGTGTGAAACAGCCGGCCCGTCAGTTCCCGCCGCGGCCGTCGGGCCGCAAGGCGGGACGGAAGACGAGGGAGCGATGGACGATCTCCTCGTCCATACCATGGCGGAGTGGTTCATCGACATCGCGATCGTCGCGGAGCCATACTTCGTACCTTCCGACCGGGAGGACTCCTGGGCCGGAGATGTCGATGGCTCCGTGGCGATCGTGATGCGACAGTCGGCGGCGTTACCCCCCCTTGGAATGGTGGCCAGGGGATCTGGGTACGTCGTAGTTAGGGTCGACGAAACCGTCGTGATCGGGGTGTACTTCTCTCCGAACAGGAGTCTCGCCGAGTTCGAGCAGTTCCTGGGTGGGCTCGAGGCGTTGGTTCATCGCTTCGAGTCTCGCCCAGTGATACTAGCGGGGGACCTCAACGCTAAATGTACGGCGTGGGGATCCCCCCGCACGGACTGGCGTGGCGAATTCCTGTCGGAGTGGGCTTTCGCGACCGGCCTCTGTCTCCTAAACAGAGGTTCGGTCGCGACCTGCGTGCGGTGGAACGGGGAATCACACGTGGACGTATCGTTCGCGTCTCCGTCCGCCGCGCGCCGTGTCTGTGGTTGGCGTGTCCTCGAGGGGGCGGAGACGCTCTCGGATCATCGGTTCGTCCGATTTGAGCTCTCCGTTTCCACCTCGTTGAACGCGCCGGCCGAAGACGCCCGCGGCGAGGAGGAGCTCCCGCGTAGTGCTCCCCGATCATTCCCGCGATGGGCACTGAAGCGCCTGAACAAGGTGCTTGCGGTGGAGGCGGCCACAGTGGCCGCGTGGGCGCCGATGCCCGCGCGTCTAGTGGACGTGGAGTTGGAGGCCGAATGGTTCCGGGGTACGATGCGTCGCGTCTGCGATGCTGCGATGCCCCGGGTCAGCGGTCGCGCTCCGCGTGGCGGTGCGTACTGGTGGACGCCCGAGATCGCGCTCCTCCGAGAGGAGTGCGTGCGGGCGCGCCGCCGAAGCGCCCGCCACCGCCGTCGCCGCCTTCGCGATGCGGACTTCGCGGAGGTGGCGACCCGCCTGCATGCCGACTGCCGTCAGAAGCAGGAGGCACTGCGGCGGGCCATCGGCGAGGCCAAGTCTCAGAGCATGAAGACGCTCCTGGAGACGCTTGACCAAGATCCTTGGGGCGCCCGTACCAAACGTAGCGTGAGCGGTGATGCCCCTGCTGAGGTGGTCCCTCCGAGCATCTCGGAGGAGGAGATTCGTGCGGCCGTGTCGAGGATGCGGAGGAAGGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGGATTTGGCCTTCGGTGCCCTTGGGGACCGACTCGTGCGGCTCTATGAAGCCTGCCTCGAGTCGGGACGGTTTCCGAAGCAGTGGAAGACGGGCAGACTTGTTCTGCTAAGGAAGGAGGGACGCCCCGCGGACTCACCTGCGGGATATCGTCCCATCGTGCTGCTGGACGAGGCTGGAAAATTGCTCGAGCGGGTGGTGGCCGCCCGCATCGTCCAGCATCTGACGGGGGTGGGTCCCGATCTGTCAGCGGAGCAGTTCGGATTCAGGGAGGGCCGCTCGACCATCGACGCGGTGATGCGCGTGCGTGCCCTCTCTGATGAGGCTGTCGGCCAGGGCGGGGTTGCACTGGCGGTGTCCCTTGACATCGCCAACGCGTTCAACACCTTGCCCTGGTCGGTGATCGCAGGGGCGCTGGAGTATCACGGTGTCCCTGCGTATCTCCGTCGGCTGATCGGGTCCTACCTCGAGGACAGGTCGGTCGTGTGCACCGGGCACGGTGGGGCGGTGCTCCGCTTCCCCGTCCAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCTTGTGGAACATCGGCTACGACTGGGTCCTGCGTAGCGCCCTAAGTGCTCCTCTTCCGGGTCTGAGCGTAGTTTGTTACGCGGACGACACTTTGGTCGTGGCCCGGGGGAGGGACTTGCGAGAGTCTGCCCGTCTTTCCTGTGCGGGGGTGGCCTTCGTCATCGGCAGGATCCGAAGGCTGGGTCTGGAGGTGGCGCTCGATAAATCCCAGGCCCTGTTGTTTCACGGGGCCCGGAGAGCGCCGCCTCAGGGGGCCCACCTCGTGATCGGAGGCGTTCGCGTCGAGATCGAGGCAACCGGGTTGCGGTACCTCGGTCTCGTACTGGACGGTCGTTGGAGCTTCCGCGCTCACTTTGAAAGATTAGGTCCCCGACTGATGGCGGCTGCCGGCTCGCTGAGTCGGCTGTTGCCGAACGTCGGGGGGCCTGACTTGGTGGTGCGCCGCCTCTACACGGGGGTGGTGCGGTCGATGGCACTGTACGGGGCTCCCGTGTGGTGCCACGCCCTGACCCGCGACAACGTTGCGGCGTTGCGACGTCCGCAGCGCGCGATTGCGGTCAGGGCGGTTCGTGGATACCGCACCGTCTCGTTTGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTGGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCCGGGGCGGCGGAAGTTCGAGCGCGGAAGCTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGAATGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGGGCGACACAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCCCCGCTTTCGTGGAGCAGCGCCGCGTCCTCGTTGCAAATATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGAGCCGGGGTTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MSSSRGTVAAPAPSKATVTKVGAAPATRALANLAAPVKSASRRVHAQPARPPTAAPAPLQPAKAGSGRSRAKQKKGLNAAKQAQTPQPRPLPSAPSNMNEAWTTVVRRGGRKTQTSLDPRPVLVAAAPQTMGREAARTKKKGRKSRKPRAPRSAAVVLELLPAAKEKGFTYGEVMARARCSVDVDAIGVEGGIRVRHTANGARLLECPGADSGAAADRLAARLREVLPDPEVVRIERPVKMAEIKVTGLDECATQMEVAAAIASQGNCALAQVKVGELRSCYSGAFTVWARCPVQAATLLATPPQGRPADSPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLAKCPSAVDRSGLCFRCCQPGHKAASCTAATPHCVLCDAAKRRADHRAGGPACLSAPSSTKRRRGGKKKKKSEEEPAACETAGPSVPAAAVGPQGGTEDEGAMDDLLVHTMAEWFIDIAIVAEPYFVPSDREDSWAGDVDGSVAIVMRQSAALPPLGMVARGSGYVVVRVDETVVIGVYFSPNRSLAEFEQFLGGLEALVHRFESRPVILAGDLNAKCTAWGSPRTDWRGEFLSEWAFATGLCLLNRGSVATCVRWNGESHVDVSFASPSAARRVCGWRVLEGAETLSDHRFVRFELSVSTSLNAPAEDARGEEELPRSAPRSFPRWALKRLNKVLAVEAATVAAWAPMPARLVDVELEAEWFRGTMRRVCDAAMPRVSGRAPRGGAYWWTPEIALLREECVRARRRSARHRRRRLRDADFAEVATRLHADCRQKQEALRRAIGEAKSQSMKTLLETLDQDPWGARTKRSVSGDAPAEVVPPSISEEEIRAAVSRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLYEACLESGRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVVAARIVQHLTGVGPDLSAEQFGFREGRSTIDAVMRVRALSDEAVGQGGVALAVSLDIANAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEDRSVVCTGHGGAVLRFPVQRGVPQGSVLGPLLWNIGYDWVLRSALSAPLPGLSVVCYADDTLVVARGRDLRESARLSCAGVAFVIGRIRRLGLEVALDKSQALLFHGARRAPPQGAHLVIGGVRVEIEATGLRYLGLVLDGRWSFRAHFERLGPRLMAAAGSLSRLLPNVGGPDLVVRRLYTGVVRSMALYGAPVWCHALTRDNVAALRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSEWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCPAFVEQRRVLVANIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRRRAGVRRRAFVQLQPL

Uniprot

Q868Q4   Q8MY31   Q8MY35   Q8MY33   Q8MY27   O01419   + More
A0A0J7KQK3   A0A3S2LNH8   A0A0J7N0R3   A0A0J7KFH2   A0A0J7NFZ0   A0A0J7KRB8   A0A0J7KJH4   A0A0J7KF91   A0A0J7K3F1   A0A0J7N8R4   A0A0J7MY17   A0A0J7KF40   X1WZ64   J9KJG8   A0A2S2NQQ6   J9JWJ3   J9KM84   A0A2S2PEZ7   X1WJY4   J9KT61   A0A2H8TR36   X1WXT5   F7IYU8   J9KWM9   J9LQQ1   A0A139W940   A0A2M4CS98   J9LA43   J9L0J0  

Pubmed

12644555    9092665    18362917    19820115   

EMBL

AB090825    BAC57926.1    AB078931    BAC06456.1    AB078929    BAC06452.1    + More
AB078930    BAC06454.1    AB078935    BAC06462.1    D85594    BAA19776.1    LBMM01004272    KMQ92618.1    RSAL01003504    RVE40273.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01005474    KMQ91485.1    LBMM01003988    KMQ92922.1    LBMM01006657    KMQ90417.1    LBMM01008445    KMQ88871.1    LBMM01015025    KMQ84953.1    LBMM01008226    KMQ89040.1    LBMM01014122    KMQ85315.1    LBMM01008422    KMQ88894.1    ABLF02011183    ABLF02041884    ABLF02041886    GGMR01006838    MBY19457.1    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02018942    ABLF02041885    GGMR01015159    MBY27778.1    ABLF02011238    ABLF02009073    ABLF02030702    ABLF02042963    GFXV01003903    MBW15708.1    ABLF02004854    ABLF02041317    AB593321    BAK38639.1    ABLF02011927    ABLF02030663    ABLF02041312    KQ972691    KXZ75806.1    GGFL01004044    MBW68222.1    ABLF02018098    ABLF02027248   

Proteomes

UP000036403    UP000283053    UP000007819    UP000007266   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF01421   Reprolysin
PF00098   zf-CCHC
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.40.390.10     3.30.420.10    

ProteinModelPortal

Q868Q4   Q8MY31   Q8MY35   Q8MY33   Q8MY27   O01419   + More
A0A0J7KQK3   A0A3S2LNH8   A0A0J7N0R3   A0A0J7KFH2   A0A0J7NFZ0   A0A0J7KRB8   A0A0J7KJH4   A0A0J7KF91   A0A0J7K3F1   A0A0J7N8R4   A0A0J7MY17   A0A0J7KF40   X1WZ64   J9KJG8   A0A2S2NQQ6   J9JWJ3   J9KM84   A0A2S2PEZ7   X1WJY4   J9KT61   A0A2H8TR36   X1WXT5   F7IYU8   J9KWM9   J9LQQ1   A0A139W940   A0A2M4CS98   J9LA43   J9L0J0  

PDB

1WDU     E-value=2.3548e-08,     Score=145

KEGG

105841441    no KO assigned | (RefSeq) uncharacterized LOC105841441

GO

GO:0003964   GO:0008270   GO:0003676   GO:0016021   GO:0004523   GO:0006508   GO:0005737   GO:0008235   GO:0019538   GO:0030145   GO:0000049   GO:0005975   GO:0004553  

Length:

1460

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01284

Exp number, first 60 AAs:

0.00086

Total prob of N-in:

0.00007

outside

1  -  1460

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

34.141233

CSRT

0

Interpretation

Uncertain