Silkworm Genome Informatics Database

Gene

KWMTBOMO12268

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr20(-):11079483-11083454 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.476

CDS

ATGAAAGTTCGAAAAAGGAAAAGGGTTTTGTCGGCGACTCCCCATTCCACATTTAATGTGGATTTCAGCAATGTAAGGGGTCTACATAGCAACCTCGACGCCGTACACCACCATCTTGAGACGGCGCAGCCTGCCCTTCTTTTTCTGACGGAGACGCAGATATCTGCTCCGGATGATACTTCGTACCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGTGTATTCGTCCGGGCTGATATCTGTTGTCGCCGTCTACGAAGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGATCACGGGGGCTGTACCCGAGTCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGATAGAGCATGTGCAAGAGGGGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGACTTTAACGCTCATCACCAAGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCCTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATTGAGGGGCACGAGCCTTCTCTGTTGGACCTTCTGCTGACCACCGATCCAGCCGGATACAGTGTGGTGGTCGACGCTCCACTTGGATCGTCTGATCACTGCCTTATCCGTGCTGCCACACCACTCTCTCGTCCTAGTCGTCGAACGACGACCAGGTATCGAAGAGTTTGGCAGTATTTGTCAGCAGATTGGGATGGATTGCGTGAGTTTTACGCATCCTACCCATGGGGGCGGTTCTGCTTTTCCTCTGCTGATCCTGACGTCTGTGCGGACCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTATTCCCTCCTCTGAGGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACACCTCAAGCGGTCCGCATACGTTGCATGGGATGATGCTAGGAGACGTCGGGATCCTAACATCTCAGAGGAAAGGCGGAAATATAACGCCGCTTCCAGGTCCTACAAGAAGGTTATTGCCAGGGCGAAATCGGAGCACGTTGCTAGAATTGGCGAGCGACTGAAGAGCTATCCCTCTGGGAGCCGTGCTTTTTGGTCGCTCGCCAAAGCTGCAGAAGGTAACTTTTGCAGGTCTAGTCTCCCACCACTACGCAAGTCCGATGACAGTCTGGCCCATAGTGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCTCCGGTGTGATAGTTCCCTGCCGGAGATCTGCTTTACACAGTGTGCAGTCAGGCGGGAACTCCGACTCCTGGACGTCCATAAGTCGAGCGGGCCAGACGGCATCCCTGCAGTGGTTCTGAAAACGTGCGCCCCTGAGCTGACGCCTGCGCTAACGCGTTTGTATCGCCTCTCTTATTGCGCTAACAGGGTTCCGTCTTCATGGAAGACTGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTACAGGCCTATCGCGATAACTTCCTTGCTTTTCAAGGTGATGGAGCGAATAATTAATATACAACTCCTGAAGTATCTGGAGGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATTGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCGGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTATTCAAACGAGGCTTGTGGAGAGTATTAAGCGACGACCCATATCCATGGCCACTATGCCGCGACTGCACAAAAACATGTACAAGACGCCTACAGGCATTCGAGATGTGGTGCTACCGTCGCATGCTACGCATTAGTTGGATGCAGAGGGTCAGGAACGAAACCGTGCTTCAGCGCGTTCATATGTCCCGGAAAATGTTTCCTTCTATCAAAAAGCGCAAGATAGAATATCTCGGCCACGTGCTCAGGAACGATATATACATGCTGCTGCAGTTGATAATGATGGGCAAGGTGGACGGAAAGAGACGTGCTGGGCGAAGAAAGAAGTCATGGCTCCGGAATATCCGGGAGTGGACCGGTATTGCCTGCGTCGAACAGCTGTTCTGGCTAGCTGCTGATAGAAATGAATACAGGAAGCTAACGGCCTTCAAGATTGAAGAGGCACTGGAAGAAGAAGAAGTACAAAAACATAACCTCTTAAAATTAATTCAATACAGACCCGTACATCGACGGATACTTTTACGAATTCAATTGAATGTATTTTACGCGAAATTAAAATGA

Protein

MKVRKRKRVLSATPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADICCRRLRSLEQRDLSLLWLRVDHGGCTRVYACLYRSHSSDAGSALIEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGLSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAATPLSRPSRRTTTRYRRVWQYLSADWDGLREFYASYPWGRFCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAAHLKRSAYVAWDDARRRRDPNISEERRKYNAASRSYKKVIARAKSEHVARIGERLKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNILRCDSSLPEICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLFKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSLFKRGLWRVLSDDPYPWPLCRDCTKTCTRRLQAFEMWCYRRMLRISWMQRVRNETVLQRVHMSRKMFPSIKKRKIEYLGHVLRNDIYMLLQLIMMGKVDGKRRAGRRKKSWLRNIREWTGIACVEQLFWLAADRNEYRKLTAFKIEEALEEEEVQKHNLLKLIQYRPVHRRILLRIQLNVFYAKLK

Uniprot

Q6UV17 A0A3S2LQP1 A0A3D5S1K1 A0A0P4VVV8 A0A0P4VPK5 W4XUR2 + More
A0A2H9T4U7 A0A2H9T4N9 W4YEI4 W4XMI9 A0A2H9T4F1 Q8WS60

Pubmed

30148503 29150518 11733140

EMBL

AY359886 AAQ57129.1 RSAL01000422 RVE41792.1 DPOC01000269 HCX22453.1 + More
GDRN01111277 JAI56804.1 GDRN01111278 JAI56803.1 AAGJ04060226 NSIT01000225 PJE78229.1 NSIT01000234 PJE78200.1 AAGJ04103823 AAGJ04112043 NSIT01000271 PJE78081.1 AH011247 AAL40415.1

Proteomes

UP000283053 UP000007110

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf
IPR019786   Zinc_finger_PHD-type_CS
IPR011011   Znf_FYVE_PHD
IPR019787   Znf_PHD-finger
IPR013083   Znf_RING/FYVE/PHD

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928
SSF57903   SSF57903

Gene 3D

3.60.10.10 3.30.70.330 3.30.40.10

CDD

cd12647 RRM_UHM_SPF45

ProteinModelPortal

Q6UV17 A0A3S2LQP1 A0A3D5S1K1 A0A0P4VVV8 A0A0P4VPK5 W4XUR2 + More
A0A2H9T4U7 A0A2H9T4N9 W4YEI4 W4XMI9 A0A2H9T4F1 Q8WS60

PDB

6AR3 E-value=0.000120619, Score=113

KEGG

101736731 no KO assigned | (RefSeq) uncharacterized LOC101736731

GO

GO:0003964 GO:0004519 GO:0003723 GO:0016021 GO:0046872

PANTHER

PTHR13288

Length:

1143

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04034

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00019

outside

1 - 1143

Pi

4.374911

Theta

13.961435

Tajima's D

-1.297868

CLR

14.582785

CSRT

0.0865956702164892

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree