Gene

KWMTBOMO12259

Pre Gene Modal

BGIBMGA009144

Annotation

PREDICTED:_gastrulation_defective_protein_1_homolog_[Papilio_xuthus]

Location

Bomo_Chr20(+):10876575-10881307      View in EpiBrowser

Full name

Gastrulation defective protein 1 homolog      

Location in the cell

Nuclear   Reliability : 4.742

CDS

ATGAGTAAAAAGCCCATATCGTTCGGTAAAATAAGTCTAAATTTTACTAAAGCAAAGGAATTTAATGATAAAAATGAAAAGAAATCGCCAGCAGGATTTGGAACCTTTGGTCGAACTCCTATACAAGAACAAAAAGAAATTGAAGAAATCGCCGACGATTTAGAGAGCCAGCACGTAGAACAAGTCATGGGCATTAAAAACTTTGGTAAAAAAGCCAAAAATTTCAATTTAGATGAGTTAGTTGAGCAAGCAAAGAAAACTGCACAAGAAGCCAACAAAAAGAGGTTGGAAGCGGAATTGAATGCTGATAGAAATTCATCTTCTGATGACCAGGTTGGCAATACTATTGGACCCACATTGGCCAATGTTGACCAAAATCCTTCAAAAGATGATGACGAAGGATTAATAGGACCTTTACCGCCGATGTCTCCGGACGCGAGTAAAGAACAAGAAGAAGATAAAGAGGAGGATAGCTATGACGAGCTGAGTGGTTCTGATGATGAAGAAATAAGTTTGGTAAACAGAATACCAAATACACATGAGGTAGAAATGCATCATGGTTCAAAAGCAGTGATAGCACTTGCTGCCGATCCTTCTGGAGCTAGACTAGCCACTGGATCCATTGATTACGATGTATCCTTCTGGGATTTTGCAGGTATGGACTCGTCAATGCGTTCGTTCCGCACTCTTCAGCCCTGCGAGAACCATCCTATCAAAGCCCTGCAGTACTCAGCTACAGGAGACTCGATCCTCGTGGTCAGCGGTTCAGCACAAGCTAAAGTACTAGACAGAGACGGTTTTGAAGTCTTGGAATGCGTGAAAGGAGATCAGTATATCACGGATATGGCAAAGACGAAAGGTCACACGGCGTCCTTGAACAGCGGCTGCTGGCACCCTCACATCCGCGAGGAGTTCATGACCTGCTCTCAAGATGGAACGCTCAGGCTCTGGCTAACGGAAAATCCGAAACAACAGAAATCCGTCATCAAACCCCGTCAGCAAGGCGGCTTGAAGACCAACCCCACCGCCTGCACATTCTCCAGAGACGGTAACACTGTAGCGTGCGGCTGTTTCGATGGCTCCATCCAGATGTGGGACCACAGGAAGAACTTCGTCAACACCACGACCTTGCTCAGGGACGCTCATCAGAAACAGACGGAGATCACGAGCATCGCGTACTCATACTTAAGGCAACACCTGGCCACTCGCAGCAACGATGATACGCTAAAACTGTGGGACTTGAGGAACTTCAAGAAACCCATCAAAGTGTTTGCGGACTTGTTCTCGAGATACGAACAGACCGATTGCGCCTTCAGCCCAGACGACTCTATGGTGTTCACGGGCGAGTCTCTCCAGCGTGGCCAAGAGGTGGGCAAATTGATATTCTGGGACACGAAAACTTTCGAACAGGTCAACACAATTGAGGTCAGTTCGTCCCACGTCATCAAAGCGATGTGGCACCCGAAATTGAATCAGATATTCGTCGGATGCGGCAACGGCGTCGTGAAATGCTATTACGATAAAAAGAGAAGTCTCCGCGGCGCCAAGCTCTGTATAATAAAGACGCACAGGAAAAAGGACACTATTGAGGTGGTGAGCACACAGCAGATCATAACCCCGCACGCTTTGCCCCTGTTCAGACAAGAAAAACTTCGGACCAGCAAGAAAAAGATGGAAAAAGAGAGGCTGGACCCGGTTAAGTCACACAGACCAGACCTGCCCATAACTTCAGGGCAGGGTGGGAGAGTAGCTGCTTCGGGTAGCACTCTGAGCTCATTCGTCATCAGGAATTTGGGGCTGAGTAAGAGAGTTAACGATGAACAGGACCCGAGGGAGGCCATATTGAAATATGCTAAAGATGCAGAAGAGAATCCCTTCTGGGTAGCTCCGGCTTATAAGAAAACTCAGCCGAAACCTATCTTCCAAGGGTCTGACGAGGAAGGACCGTCCGATCCTAAGAAGTCGAAGACTTCGTGA

Protein

MSKKPISFGKISLNFTKAKEFNDKNEKKSPAGFGTFGRTPIQEQKEIEEIADDLESQHVEQVMGIKNFGKKAKNFNLDELVEQAKKTAQEANKKRLEAELNADRNSSSDDQVGNTIGPTLANVDQNPSKDDDEGLIGPLPPMSPDASKEQEEDKEEDSYDELSGSDDEEISLVNRIPNTHEVEMHHGSKAVIALAADPSGARLATGSIDYDVSFWDFAGMDSSMRSFRTLQPCENHPIKALQYSATGDSILVVSGSAQAKVLDRDGFEVLECVKGDQYITDMAKTKGHTASLNSGCWHPHIREEFMTCSQDGTLRLWLTENPKQQKSVIKPRQQGGLKTNPTACTFSRDGNTVACGCFDGSIQMWDHRKNFVNTTTLLRDAHQKQTEITSIAYSYLRQHLATRSNDDTLKLWDLRNFKKPIKVFADLFSRYEQTDCAFSPDDSMVFTGESLQRGQEVGKLIFWDTKTFEQVNTIEVSSSHVIKAMWHPKLNQIFVGCGNGVVKCYYDKKRSLRGAKLCIIKTHRKKDTIEVVSTQQIITPHALPLFRQEKLRTSKKKMEKERLDPVKSHRPDLPITSGQGGRVAASGSTLSSFVIRNLGLSKRVNDEQDPREAILKYAKDAEENPFWVAPAYKKTQPKPIFQGSDEEGPSDPKKSKTS

Similarity

Belongs to the WD repeat GAD-1 family.

Keywords

Complete proteome   Reference proteome   Repeat   WD repeat  

Feature

chain  Gastrulation defective protein 1 homolog

Uniprot

H9JHZ6   A0A2H1W2P4   A0A2W1BY87   A0A194QHY1   A0A212FPX0   A0A0L7LD21   + More
A0A194QT25   A0A088AHJ2   A0A2A3EC20   A0A2P8ZF38   A0A0L0CT61   A0A0M9A8Z3   A0A0C9QU76   A0A0C9QKW8   W8BIK9   A0A034WR59   A0A151WST6   E2A3E8   A0A026W4V6   A0A151IAZ0   A0A195BS28   B3NPS5   A0A151J2K2   A0A195EW76   A0A158NNS2   A0A1W4UMK4   A0A154PS53   F4WV22   A0A0A1XM26   B4QAZ6   Q9W1J3   A0A0M5IXN1   B4PA68   A0A1J1HLA3   B4I8T4   A0A1B0G7Q0   A0A1A9ZWD7   B4LM82   B4KNM9   A0A1B0BNI4   A0A232EYR8   A0A1A9XP27   A0A1A9V8D3   A0A2J7RSL7   A0A3B0JRH9   Q17KF1   K7JAQ6   A0A1I8M6J9   B4J6L5   B3ME80   A0A182HC20   B4MYD5   A0A1A9WIQ5   A0A1I8PI69   A0A182F154   A0A0L7RID2   Q293F7   B4GBL0   A0A182GHW5   W5JU00   A0A2M4BH90   A0A067R629   A0A0K8VWI8   A0A1Q3F4V0   A0A1Q3F4R8   A0A182W6T6   A0A182QZ65   B0XJC0   A0A182K3M9   A0A182L130   A0A182J5K2   A0A182PCL1   A0A182V9Q6   A0A182XL15   A0A182Y3K2   A0A182R556   A0A336MEL8   A0A182UBW8   A0A336ML75   E9J9M8   A0A182HUE0   A0A182MYW5   A0A084W4P4   A0A1Y1LFM9   A0A2M4AKS9   A0A2M4AJS2   A0A1W4XFF2   E0VYP6   A0A1W4XEI4   A0A182M5F5   D7EJE9   A0A1B6H134   A0A1B6IFT2   A0A1B6HCS6   A0A1B6M4Z0   A0A087U8Q1   A0A1B6DWZ1   A0A0A9W9H9   A0A0K8SN21  

Pubmed

19121390    28756777    26354079    22118469    26227816    29403074    + More
26108605    24495485    25348373    20798317    24508170    30249741    17994087    21347285    21719571    25830018    22936249    10731132    12537572    12537569    17550304    28648823    17510324    20075255    25315136    26483478    15632085    20920257    23761445    24845553    20966253    25244985    21282665    24438588    28004739    20566863    18362917    19820115    25401762    26823975   

EMBL

BABH01035297    ODYU01005877    SOQ47216.1    KZ149947    PZC76733.1    KQ459193    + More
KPJ03061.1    AGBW02000859    OWR55753.1    JTDY01001610    KOB73367.1    KQ461154    KPJ08622.1    KZ288310    PBC28591.1    PYGN01000076    PSN55116.1    JRES01000049    KNC34604.1    KQ435711    KOX79660.1    GBYB01007264    JAG77031.1    GBYB01001207    JAG70974.1    GAMC01013444    JAB93111.1    GAKP01002125    JAC56827.1    KQ982766    KYQ50982.1    GL436428    EFN72012.1    KK107485    QOIP01000006    EZA50084.1    RLU21933.1    KQ978169    KYM96608.1    KQ976417    KYM89820.1    CH954179    EDV56866.1    KQ980382    KYN16309.1    KQ981953    KYN32488.1    ADTU01021742    KQ435119    KZC14731.1    GL888384    EGI61910.1    GBXI01002280    JAD12012.1    CM000362    CM002911    EDX08433.1    KMY96119.1    AE013599    AY058624    AY113366    CP012524    ALC41798.1    CM000158    EDW92394.1    CVRI01000010    CRK88715.1    CH480824    EDW57009.1    CCAG010016890    CH940648    EDW60960.1    CH933808    EDW10014.1    JXJN01017413    NNAY01001609    OXU23440.1    NEVH01000253    PNF43828.1    OUUW01000001    SPP75946.1    CH477225    EAT47139.1    AAZX01000978    CH916367    EDW00918.1    CH902619    EDV35475.1    JXUM01033196    KQ560981    KXJ80146.1    CH963894    EDW77124.1    KQ414583    KOC70727.1    CM000071    EAL24654.2    CH479181    EDW31305.1    JXUM01012233    KQ560349    KXJ82902.1    ADMH02000146    ETN67611.1    GGFJ01003027    MBW52168.1    KK852936    KDR13599.1    GDHF01009090    JAI43224.1    GFDL01012459    JAV22586.1    GFDL01012518    JAV22527.1    AXCN02000817    DS233478    EDS30157.1    UFQT01000450    SSX24508.1    UFQS01001558    UFQT01001558    SSX11439.1    SSX31006.1    GL769399    EFZ10467.1    APCN01002453    ATLV01020363    ATLV01020364    KE525299    KFB45188.1    GEZM01058747    JAV71691.1    GGFK01008011    MBW41332.1    GGFK01007719    MBW41040.1    DS235845    EEB18502.1    AXCM01012135    DS497704    EFA12723.1    GECZ01001408    JAS68361.1    GECU01021930    JAS85776.1    GECU01035223    JAS72483.1    GEBQ01008981    JAT30996.1    KK118740    KFM73740.1    GEDC01007121    JAS30177.1    GBHO01040471    JAG03133.1    GBRD01011108    GDHC01008383    JAG54716.1    JAQ10246.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000037510    UP000053240    UP000005203    + More
UP000242457    UP000245037    UP000037069    UP000053105    UP000075809    UP000000311    UP000053097    UP000279307    UP000078542    UP000078540    UP000008711    UP000078492    UP000078541    UP000005205    UP000192221    UP000076502    UP000007755    UP000000304    UP000000803    UP000092553    UP000002282    UP000183832    UP000001292    UP000092444    UP000092445    UP000008792    UP000009192    UP000092460    UP000215335    UP000092443    UP000078200    UP000235965    UP000268350    UP000008820    UP000002358    UP000095301    UP000001070    UP000007801    UP000069940    UP000249989    UP000007798    UP000091820    UP000095300    UP000069272    UP000053825    UP000001819    UP000008744    UP000000673    UP000027135    UP000075920    UP000075886    UP000002320    UP000075881    UP000075882    UP000075880    UP000075885    UP000075903    UP000076407    UP000076408    UP000075900    UP000075902    UP000075840    UP000075884    UP000030765    UP000192223    UP000009046    UP000075883    UP000007266    UP000054359   

PRIDE

H9JHZ6    Q9W1J3   

Pfam

PF00400   WD40        + More
PF13855   LRR_8
PF13306   LRR_5

Interpro

IPR001680   WD40_repeat        + More
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR026906   LRR_5       
IPR032675   LRR_dom_sf       
IPR033140   Lipase_GDXG_put_SER_AS       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10     3.80.10.10    

ProteinModelPortal

H9JHZ6   A0A2H1W2P4   A0A2W1BY87   A0A194QHY1   A0A212FPX0   A0A0L7LD21   + More
A0A194QT25   A0A088AHJ2   A0A2A3EC20   A0A2P8ZF38   A0A0L0CT61   A0A0M9A8Z3   A0A0C9QU76   A0A0C9QKW8   W8BIK9   A0A034WR59   A0A151WST6   E2A3E8   A0A026W4V6   A0A151IAZ0   A0A195BS28   B3NPS5   A0A151J2K2   A0A195EW76   A0A158NNS2   A0A1W4UMK4   A0A154PS53   F4WV22   A0A0A1XM26   B4QAZ6   Q9W1J3   A0A0M5IXN1   B4PA68   A0A1J1HLA3   B4I8T4   A0A1B0G7Q0   A0A1A9ZWD7   B4LM82   B4KNM9   A0A1B0BNI4   A0A232EYR8   A0A1A9XP27   A0A1A9V8D3   A0A2J7RSL7   A0A3B0JRH9   Q17KF1   K7JAQ6   A0A1I8M6J9   B4J6L5   B3ME80   A0A182HC20   B4MYD5   A0A1A9WIQ5   A0A1I8PI69   A0A182F154   A0A0L7RID2   Q293F7   B4GBL0   A0A182GHW5   W5JU00   A0A2M4BH90   A0A067R629   A0A0K8VWI8   A0A1Q3F4V0   A0A1Q3F4R8   A0A182W6T6   A0A182QZ65   B0XJC0   A0A182K3M9   A0A182L130   A0A182J5K2   A0A182PCL1   A0A182V9Q6   A0A182XL15   A0A182Y3K2   A0A182R556   A0A336MEL8   A0A182UBW8   A0A336ML75   E9J9M8   A0A182HUE0   A0A182MYW5   A0A084W4P4   A0A1Y1LFM9   A0A2M4AKS9   A0A2M4AJS2   A0A1W4XFF2   E0VYP6   A0A1W4XEI4   A0A182M5F5   D7EJE9   A0A1B6H134   A0A1B6IFT2   A0A1B6HCS6   A0A1B6M4Z0   A0A087U8Q1   A0A1B6DWZ1   A0A0A9W9H9   A0A0K8SN21  

PDB

6QDV     E-value=2.06202e-12,     Score=177

KEGG

101737950    no KO assigned | (RefSeq) gastrulation defective protein 1 homolog

GO

GO:2001173   GO:0005634   GO:0035861   GO:1903775   GO:0005515   GO:0008234   GO:0015074   GO:0042147   GO:0005737   GO:0006428   GO:0004812   GO:0000049   GO:0005975   GO:0004553  

Length:

658

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00886

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00031

outside

1  -  658

 

 

Pi

172.907138

Theta

160.02021

Tajima's D

1.036144

CLR

2.539625

CSRT

0.668766561671916

Interpretation

Uncertain