Gene

KWMTBOMO12255

Annotation

PREDICTED:_uncharacterized_protein_LOC105842927?_partial_[Bombyx_mori]

Location

Bomo_Chr20(+):10700045-10740259      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.844

CDS

ATGGAAGGAAGAACCAATTTAAAAATCGAACAGAAAAAATATCAAGACGAAATTTACAATCCAGAAAACGATATTGCAGTCAAACATTCAAATTCACATAATAAAAGAAGAAATAAAAGATACGCTGACGATGAGAACTGCGAAGCTTTTCTTTACGATGAGAATGATAGCAGTCGTATAATAAAGCATCCTCACGCTAGTAACAGCACTACATACTACAATAATTCAAATTGTGTGACCATTGTTAGTACCACAGAAGGAAAGATTATTATCTTGACATTTATAGATGTTTTTCACATAGAATCACATCCAGACTGCGCGTACGACTATTTAGAGATTCGGGACGGTAAGCACGGATATTCCGATATTCTGGCCAAGGTGTGCGGCGAAGCCTTCCCTGAACAAATAAAAACGACTGGCCCAAACGCTTGGTTGAAGTTCCGCTCTGACGACACCATTGAGTACGAGGGGTTCACCATAAGCATTGATTTTGTGGCTGCTCCAAGTCATAGCACGCCGGGCGCATGCTACAAGACATTGAGGGGGAAATACGGTGTTATTGACTTCAATGACACGAAAGGTCCCTGTCTCGACGGCACCACCAACCAATACATAGATTTTTTGTGGACCATTGAAACACCACCGAAGACAAAGATTTACTTAAACTTCACAACTTACACTCTAGCGAGACCAAACGAATGCGAATACAATGTGATACAAGTTTTCGGGACAGTCGTTGAAATGGATAAGAAACTGGCCGCTTACTGTGGCTCCATGGCGTATTCGGTGACCACAAAAGATGAGAACGGCGATCCCGGGAACGTCATGAAAATAAGACTTCACCTGTCCAAAGACGGGTACAATGCAACACATTTCAATGCGACATACGTGGCGTTCAAAACACTGGATCCCAACAAAGATGACAAATGCGATGACGACCAATTCGACTGCACGGACAACACCTGCATATCTCAGGATCTGAAATGCGACGATGTAGCACATTGCCGACTTAAAACCGACGAAGACAAAGACACAACGTGTATTCTAACTGCCCAATCTGTATTGAACACGCCACATATCATGGTCATTCTGATAATATTCTCGCTGATCTTGTCCGGGATGAGCTTCGTTTTCCTTTTCAAATGCATCAGGAAGTTGTACCTCGAACACAAGATCATTAAGGAACATTTGAGGCAGTCCTGCGAAGACAGACTCGACACGTTGGTGAGCAGTCGGCTGACCTTAGACGCGAAGCGACTTCATCAGGACAGTCTCCCGAGAGCCAGCCTCGAGAGGGAGAACCACACCAATGAGATGTACAAACAGCAGAGGAGTCATTCAAAACATAAGCAATCCAGTATAGATTCCGACTACATACAAGAAACTCAACTGGACATAGAAGAGGAACCCTGGAGAAGAGAAGTAGATAGTGTCCCCGTTGAAATGGAAAACGTAAGGCTAGAACGAAACGGAAGAACCAGAAGTAGTGATTTAAGCAGAAAAGAAGAGTATATTAGGAGTAAGAGAAAAGAAAGCGAAGATGTTAAGGAAAAGAGGGAGATAAGAGACGTGTCTGTTGGTGCGCCGGACACGAAGGAGTCCGGTTGTCAGACCAGAGAAAGTCTTTTCCAGTCTGAAGCACCTCCTAGTTCTGACGGCTCGGGCACAAACAGCAGGGGTTTCTCGACCTTCGGCTACTCAGGCGGCACGGTGGTCAGGCCTTCGCCCCCAACGAAGACTTCTGAAATAACAATAGAACTAACGAAACAGACTCCTAGACAGGAGTCCATCAAGCCGCAAAAGAAATTACCAGATCGCCGGCCAATCAGCGCGGAGACCACGCGGTCCGCACCTGACGTCATCATAGTCTCCAAGCCGGTTCGCTGA

Protein

MEGRTNLKIEQKKYQDEIYNPENDIAVKHSNSHNKRRNKRYADDENCEAFLYDENDSSRIIKHPHASNSTTYYNNSNCVTIVSTTEGKIIILTFIDVFHIESHPDCAYDYLEIRDGKHGYSDILAKVCGEAFPEQIKTTGPNAWLKFRSDDTIEYEGFTISIDFVAAPSHSTPGACYKTLRGKYGVIDFNDTKGPCLDGTTNQYIDFLWTIETPPKTKIYLNFTTYTLARPNECEYNVIQVFGTVVEMDKKLAAYCGSMAYSVTTKDENGDPGNVMKIRLHLSKDGYNATHFNATYVAFKTLDPNKDDKCDDDQFDCTDNTCISQDLKCDDVAHCRLKTDEDKDTTCILTAQSVLNTPHIMVILIIFSLILSGMSFVFLFKCIRKLYLEHKIIKEHLRQSCEDRLDTLVSSRLTLDAKRLHQDSLPRASLERENHTNEMYKQQRSHSKHKQSSIDSDYIQETQLDIEEEPWRREVDSVPVEMENVRLERNGRTRSSDLSRKEEYIRSKRKESEDVKEKREIRDVSVGAPDTKESGCQTRESLFQSEAPPSSDGSGTNSRGFSTFGYSGGTVVRPSPPTKTSEITIELTKQTPRQESIKPQKKLPDRRPISAETTRSAPDVIIVSKPVR

Uniprot

A0A2H1VYF0   A0A2W1BSV4   A0A194QHY6   A0A212EI20   A0A3S2NWZ0   A0A0N0PEV3   + More
A0A0L7KQQ2   A0A2H8TKF1   J9JTZ1   A0A154PDF5   A0A182F1I5   W5JU42   A0A1I8MQJ6   W8B942   A0A0Q9WQ29   G4LU05   A0A151IB65   A0A3B0JZN0   A0A3B0JWU8   A0A0L0BKV0   A0A1W4W276   A0A0Q9WYJ6   A0A195E661   A0A0A1WTY5   A0A1I8NNB7   A0A195EY70   A0A034VZU2   A0A0K8VP32   A0A1J1IY83  

Pubmed

28756777    26354079    22118469    26227816    20920257    23761445    + More
25315136    24495485    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    25830018    25348373   

EMBL

ODYU01005223    SOQ45870.1    KZ149947    PZC76724.1    KQ459193    KPJ03066.1    + More
AGBW02014724    OWR41125.1    RSAL01000122    RVE46655.1    KQ459674    KPJ20481.1    JTDY01007192    KOB65391.1    GFXV01002337    MBW14142.1    ABLF02024947    ABLF02024948    ABLF02024952    KQ434878    KZC09873.1    ADMH02000444    ETN66455.1    GAMC01008785    JAB97770.1    CH940651    KRF82469.1    BT132635    AE014298    AEQ05533.1    AHN59681.1    KQ978125    KYM96869.1    OUUW01000011    SPP86523.1    SPP86524.1    JRES01001705    KNC20720.1    CH963851    KRF98216.1    KQ979579    KYN20658.1    GBXI01011753    JAD02539.1    KQ981914    KYN33096.1    GAKP01011345    JAC47607.1    GDHF01011665    JAI40649.1    CVRI01000061    CRL04102.1   

Proteomes

UP000053268    UP000007151    UP000283053    UP000053240    UP000037510    UP000007819    + More
UP000076502    UP000069272    UP000000673    UP000095301    UP000008792    UP000000803    UP000078542    UP000268350    UP000037069    UP000192221    UP000007798    UP000078492    UP000095300    UP000078541    UP000183832   

PRIDE

G4LU05   

Pfam

PF00431   CUB        + More
PF00057   Ldl_recept_a

Interpro

IPR000859   CUB_dom        + More
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
IPR035914   Sperma_CUB_dom_sf       
IPR023415   LDLR_class-A_CS       

SUPFAM

SSF49854   SSF49854        + More
SSF57424   SSF57424       

Gene 3D

2.60.120.290     4.10.400.10    

CDD

cd00112  LDLa
cd00041  CUB

ProteinModelPortal

A0A2H1VYF0   A0A2W1BSV4   A0A194QHY6   A0A212EI20   A0A3S2NWZ0   A0A0N0PEV3   + More
A0A0L7KQQ2   A0A2H8TKF1   J9JTZ1   A0A154PDF5   A0A182F1I5   W5JU42   A0A1I8MQJ6   W8B942   A0A0Q9WQ29   G4LU05   A0A151IB65   A0A3B0JZN0   A0A3B0JWU8   A0A0L0BKV0   A0A1W4W276   A0A0Q9WYJ6   A0A195E661   A0A0A1WTY5   A0A1I8NNB7   A0A195EY70   A0A034VZU2   A0A0K8VP32   A0A1J1IY83  

PDB

2QQL     E-value=1.14247e-14,     Score=197

KEGG

105842927    no KO assigned | (RefSeq) uncharacterized LOC105842927

GO

GO:0016021   GO:0040011   GO:0035187   GO:0060361   GO:0030510   GO:0097106   GO:0043113   GO:0097482   GO:0031594   GO:0097688   GO:0001941   GO:0007528   GO:0007274   GO:0008328   GO:0050808   GO:0005515   GO:0008270   GO:0015074   GO:0042147   GO:0005737   GO:0006428   GO:0004812   GO:0000049   GO:0005975   GO:0004553  

Length:

628

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.30246

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08642

outside

1  -  357

TMhelix

358  -  380

inside

381  -  628

 

 

Pi

238.174578

Theta

154.832497

Tajima's D

1.924974

CLR

0.133785

CSRT

0.868006599670016

Interpretation

Uncertain