Silkworm Genome Informatics Database

Gene

KWMTBOMO12254

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr20(-):10686836-10693814 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.184 Nuclear Reliability : 1.503

CDS

ATGATTCCCAAACGATTTGCGATAATCACTACATAGAGGGTACCTCCCGCTCCGCGGGGGAGAATCCCTCCGTGCGGTCGAGCAATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGCACACACTGTCACGCAGAAGGGGGCGACAGCACGGGTCGCGTAAGGGACAGGGTCCCCACCGTGCGCCTTGAGCGCTGCGAGAGCCTTATCTCGCTCTACTCGGCGCGGAGCTCCGCGAGGGGCGACGCGTCCAGTGGGCGGGAGACACCGGCGCTGTTCATCGACACTCGACAGCGGACTCGGCGGAAGCGGAAGTCGGCCCGACGGCCGGCGTCCTCCGCTCCGTCTGACTCGTCCGAGGGTGAGCCTGCCAGCGCCAAATATATGGCGTTGGCGGAAGGGCCGGCGGCTGCTGCGGCGCCGCCCGCCACTGATTGTGACGATAGTCTTCCTCGCGGACTGGCTGCTGCCTCCTCGGCGCATTCCAGGGCCGCCTGCCGTGAGACGAAAAATAGAGAGAAAATGGGAGAGGTCGAGCGCCTTGAGCGCTCCCTAACGGAGGTGGGTCCTTCTGACCCCCTCCGAGCATGTAATATTGTAAAAGATATGGTGGCCACTATAGCCACAAAATCGGCTAAAGGGCTGAAGGGTGATTATGTGCGGGCCCTAAAATCCGGAGCGGCCACCTTAGAAGAACGGATAAAGGATGTCGTGGACCGCACCACAACGACGGAGACGGCGGGCTTGCGACAGGAAGTGGCCCTGCTGCATGCCCGCCTTGAAGAGGTATCGATCGAGAATGGCCAACTTCGGACGGAGAATGGGCAGCTGCGAGTGGACATGGCTGAGTTGCGGACCATGGTGGCCGACCTCATGGAGCGGCAACGCAGCTCGGCCCCTGCCCCTCCTCCGCCTGAAGCGGAAGAAAACCAGGAAGCTGAGGAACAGAGACGGCAGCTCCTAATACTCGAGGCAAGGAGTTCAACCGTCGAGCGCGCAAGACCGCCCCTTGCTCACGAGGCGAAAAACGGGGCCCCTATACCGGCACCCCGCAGGATTGTGGCCGCAAAAACTTATAGCGGCCCCAAGAAGTCAGCCACACCGGCGAAGATTCCCGCTGCGACTGCCTCCACGTCTGCAGCTGCGAGGGCTTCGAAATCAGCCCCCGCAAAGAAACCGACGTCCGCTCCTACCCCGTCCCAGCCTGCGAAGGCGGGGCCCGGCAGGAGCCGTAACAAGAAGAAGGGGGGCGTCAACGCCGCCAAACCGGCACTGACCCCCCAGCCCCGCCCACTGCCCCCCGCCCCGGCCAACATGAATGAGGCCTGGACGACGGTGGTGCGGCGAGGGCCCAAAAAGGTAGCGGTGCCTGCCGCGCCGCGCCCCAAGCCCGCCCCTGCGGCCACCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCGACCTGGACGAAGGAGGCCGCGCGCCCCGCGGTCGGCTGCAGTAGTCGTAGAGCTGCTGCCGGCCGCTAAAGAACGGGGCATCACCTACCACGAGGTGATGACCCAGGCGCGCGGCGGCGTGAATGTGGACGCCCTCGGCGTGGAGGGGGGCATCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTATAGAGTGCCCCGGCCCCAACACAAACGCCGCGGCCGAAAAATTGGCAGCCCGGCTGAGGGAGATCCTGCCGGACCCCGAGGTGGTGCGCATCGCGCGGCCCGTGAAGATGGGAGAAGTAAAAATCACGGGCCTCGACGAGTGCGCCACAAAGGAGGAGGTCGCCTCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGGGAGCTCCGGGCAACCTACTCTGGTACCCGGACGGCGTGGGCGCGTTGCCCGATTGCAACGGCGAACCTCCTGGCCACCCCTCCACAGGGGCGGCCTTCCGACAGCCCAGGAAGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAGCTGCAGGATGCCAGGCCGTGGCGCTGTCTTCGGTGCTTCGGCACCGGCCACGGTCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGGCCTGTGCTTCCGCTGCGGTCAGCCGGGGCACAAGGCTGCATCCTGCACGACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCCAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGTAAATCCGCCCCCTCCTCTACAAAAACGAGGAGGGGCGGAAAGAAAAAGAAGCCGGCTGCAAAAAGGGCAGCCGGTGAGGCACAGGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCGCTGTCGCTGCGGAGCCGTACTTCGTCCCCACCGACCAGGACTGCTGGATGGGGGACGTCGACGGCTCCGTGGCCATTGTGTTGAGACAGTCCGCGGCGTTACCTCCCTTGGAAATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCGTCGTGATCGGGGTGTACTTTTCTCCGAACAGGAGCCTCGCCGAGTTCGAGCGGTTTCTGGGCGGGCTCGAGGCGCTTTTACACCGCCTCGGGTCCCACCCTGTCATCGTCGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCCGCACGGATGCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGGAATCTCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTCGAGCTCTCCGCCTCCTCCTTGTCGTCGTCGTCAGCCGCGGGCGCCCGCGGCGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGGATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCAAGACTCCGCGAGGAGTGCGTGAGGGCGCGCCGCCGGAGCGCACGCCACCGCCGCCGCCGTCGTCGCGACGTTGCGTTCGCGGAGACGGCGGCCCAGCTGCACGCTGACTGTCGTCAAAAACAGACGGCGCTGCAGCTGGCCATCGGCGAGGCTAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCCGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGATGGACGCCACGTGGGGCACGCCTCCACGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAAAATGAGAGCGAAGGACACGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAGTACGGCTTCAGAGAGGGCCGCTCGACTATCGACGCAATTCTGCGCGTGCGGGCCCTCTCCGATGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCCGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGACCCCTCCCCGGGCTCAGCGTAATTTGTTACGCTGACGACACGTTGGTCGTAGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACCAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGCTCTTTCACGGGCCGGGACGAGCGCCGCCTGTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACCGGTCTTCGGTACCTCGGCCTCGAACTGGACGGTCGGTGGAACTTCCGCGCTCACTTTGAGAAGTTGGGCCCTCGGCTGATGGCAACGGCCGGCTCTTTGAGCCGGCTCCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGCGCGCCCGTATGGTGCCACGCCCTGACCCGCCAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGGAAGGGCGCCCCGGCGAAGGAGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGTACCGTCGAGGCGGTCCGTCCGGTCCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAAATGCTTACCGGCCACGGTTGTTTTGGCCGGTACTTGCATAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATAGGTGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTTGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATATCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCTCCTGTAG

Protein

MIPKRFAIITTXRVPPAPRGRIPPCGRAIGRTLPHRFWGGTHCHAEGGDSTGRVRDRVPTVRLERCESLISLYSARSSARGDASSGRETPALFIDTRQRTRRKRKSARRPASSAPSDSSEGEPASAKYMALAEGPAAAAAPPATDCDDSLPRGLAAASSAHSRAACRETKNREKMGEVERLERSLTEVGPSDPLRACNIVKDMVATIATKSAKGLKGDYVRALKSGAATLEERIKDVVDRTTTTETAGLRQEVALLHARLEEVSIENGQLRTENGQLRVDMAELRTMVADLMERQRSSAPAPPPPEAEENQEAEEQRRQLLILEARSSTVERARPPLAHEAKNGAPIPAPRRIVAAKTYSGPKKSATPAKIPAATASTSAAARASKSAPAKKPTSAPTPSQPAKAGPGRSRNKKKGGVNAAKPALTPQPRPLPPAPANMNEAWTTVVRRGPKKVAVPAAPRPKPAPAATAPRQEGRAEPRGRPGRRRPRAPRSAAVVVELLPAAKERGITYHEVMTQARGGVNVDALGVEGGIKVRQTANGARLIECPGPNTNAAAEKLAARLREILPDPEVVRIARPVKMGEVKITGLDECATKEEVASAIASQGNCALADVKVGELRATYSGTRTAWARCPIATANLLATPPQGRPSDSPGRLRVGWVVAHVQLQDARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKKKPAAKRAAGEAQDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWMGDVDGSVAIVLRQSAALPPLEMVARGPGYVAARIDGTVVIGVYFSPNRSLAEFERFLGGLEALLHRLGSHPVIVAGDFNAKCTAWGSPRTDARGEALSEWAIATGLCLLNRGTVATCVRWNGESHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLREECVRARRRSARHRRRRRRDVAFAETAAQLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPRGRPYKMVRRKLQPWALPMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSKMRAKDTAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPVGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFEKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPGEGVVRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRLL

Uniprot

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KRB8 A0A0J7KFH2 A0A0J7NFZ0 X1WJY4 + More
J9KNS1 A0A139WAH4

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01012412 KMQ86235.1 LBMM01003988 KMQ92922.1 + More
LBMM01008278 KMQ89009.1 LBMM01005474 KMQ91485.1 ABLF02011238 ABLF02018808 KQ971388 KYB24913.1

Proteomes

UP000036403 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KRB8 A0A0J7KFH2 A0A0J7NFZ0 X1WJY4 + More
J9KNS1 A0A139WAH4

PDB

1WDU E-value=2.49382e-09, Score=155

KEGG

105842745 no KO assigned | (RefSeq) transcription initiation factor TFIID subunit 4-like

GO

GO:0008270 GO:0003676 GO:0003964 GO:0015074 GO:0042147 GO:0005737 GO:0006428 GO:0004812 GO:0000049 GO:0005975 GO:0004553

Length:

1797

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14192

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1797

Pi

114.184195

Theta

129.716079

Tajima's D

1.708702

CLR

0.05478

CSRT

0.829408529573521

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree