SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12254
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.184 Nuclear   Reliability : 1.503
 

Sequence

CDS
ATGATTCCCAAACGATTTGCGATAATCACTACATAGAGGGTACCTCCCGCTCCGCGGGGGAGAATCCCTCCGTGCGGTCGAGCAATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGCACACACTGTCACGCAGAAGGGGGCGACAGCACGGGTCGCGTAAGGGACAGGGTCCCCACCGTGCGCCTTGAGCGCTGCGAGAGCCTTATCTCGCTCTACTCGGCGCGGAGCTCCGCGAGGGGCGACGCGTCCAGTGGGCGGGAGACACCGGCGCTGTTCATCGACACTCGACAGCGGACTCGGCGGAAGCGGAAGTCGGCCCGACGGCCGGCGTCCTCCGCTCCGTCTGACTCGTCCGAGGGTGAGCCTGCCAGCGCCAAATATATGGCGTTGGCGGAAGGGCCGGCGGCTGCTGCGGCGCCGCCCGCCACTGATTGTGACGATAGTCTTCCTCGCGGACTGGCTGCTGCCTCCTCGGCGCATTCCAGGGCCGCCTGCCGTGAGACGAAAAATAGAGAGAAAATGGGAGAGGTCGAGCGCCTTGAGCGCTCCCTAACGGAGGTGGGTCCTTCTGACCCCCTCCGAGCATGTAATATTGTAAAAGATATGGTGGCCACTATAGCCACAAAATCGGCTAAAGGGCTGAAGGGTGATTATGTGCGGGCCCTAAAATCCGGAGCGGCCACCTTAGAAGAACGGATAAAGGATGTCGTGGACCGCACCACAACGACGGAGACGGCGGGCTTGCGACAGGAAGTGGCCCTGCTGCATGCCCGCCTTGAAGAGGTATCGATCGAGAATGGCCAACTTCGGACGGAGAATGGGCAGCTGCGAGTGGACATGGCTGAGTTGCGGACCATGGTGGCCGACCTCATGGAGCGGCAACGCAGCTCGGCCCCTGCCCCTCCTCCGCCTGAAGCGGAAGAAAACCAGGAAGCTGAGGAACAGAGACGGCAGCTCCTAATACTCGAGGCAAGGAGTTCAACCGTCGAGCGCGCAAGACCGCCCCTTGCTCACGAGGCGAAAAACGGGGCCCCTATACCGGCACCCCGCAGGATTGTGGCCGCAAAAACTTATAGCGGCCCCAAGAAGTCAGCCACACCGGCGAAGATTCCCGCTGCGACTGCCTCCACGTCTGCAGCTGCGAGGGCTTCGAAATCAGCCCCCGCAAAGAAACCGACGTCCGCTCCTACCCCGTCCCAGCCTGCGAAGGCGGGGCCCGGCAGGAGCCGTAACAAGAAGAAGGGGGGCGTCAACGCCGCCAAACCGGCACTGACCCCCCAGCCCCGCCCACTGCCCCCCGCCCCGGCCAACATGAATGAGGCCTGGACGACGGTGGTGCGGCGAGGGCCCAAAAAGGTAGCGGTGCCTGCCGCGCCGCGCCCCAAGCCCGCCCCTGCGGCCACCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCGACCTGGACGAAGGAGGCCGCGCGCCCCGCGGTCGGCTGCAGTAGTCGTAGAGCTGCTGCCGGCCGCTAAAGAACGGGGCATCACCTACCACGAGGTGATGACCCAGGCGCGCGGCGGCGTGAATGTGGACGCCCTCGGCGTGGAGGGGGGCATCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTATAGAGTGCCCCGGCCCCAACACAAACGCCGCGGCCGAAAAATTGGCAGCCCGGCTGAGGGAGATCCTGCCGGACCCCGAGGTGGTGCGCATCGCGCGGCCCGTGAAGATGGGAGAAGTAAAAATCACGGGCCTCGACGAGTGCGCCACAAAGGAGGAGGTCGCCTCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGGGAGCTCCGGGCAACCTACTCTGGTACCCGGACGGCGTGGGCGCGTTGCCCGATTGCAACGGCGAACCTCCTGGCCACCCCTCCACAGGGGCGGCCTTCCGACAGCCCAGGAAGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAGCTGCAGGATGCCAGGCCGTGGCGCTGTCTTCGGTGCTTCGGCACCGGCCACGGTCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGGCCTGTGCTTCCGCTGCGGTCAGCCGGGGCACAAGGCTGCATCCTGCACGACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCCAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGTAAATCCGCCCCCTCCTCTACAAAAACGAGGAGGGGCGGAAAGAAAAAGAAGCCGGCTGCAAAAAGGGCAGCCGGTGAGGCACAGGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCGCTGTCGCTGCGGAGCCGTACTTCGTCCCCACCGACCAGGACTGCTGGATGGGGGACGTCGACGGCTCCGTGGCCATTGTGTTGAGACAGTCCGCGGCGTTACCTCCCTTGGAAATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCGTCGTGATCGGGGTGTACTTTTCTCCGAACAGGAGCCTCGCCGAGTTCGAGCGGTTTCTGGGCGGGCTCGAGGCGCTTTTACACCGCCTCGGGTCCCACCCTGTCATCGTCGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCCGCACGGATGCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGGAATCTCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTCGAGCTCTCCGCCTCCTCCTTGTCGTCGTCGTCAGCCGCGGGCGCCCGCGGCGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGGATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCAAGACTCCGCGAGGAGTGCGTGAGGGCGCGCCGCCGGAGCGCACGCCACCGCCGCCGCCGTCGTCGCGACGTTGCGTTCGCGGAGACGGCGGCCCAGCTGCACGCTGACTGTCGTCAAAAACAGACGGCGCTGCAGCTGGCCATCGGCGAGGCTAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCCGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGATGGACGCCACGTGGGGCACGCCTCCACGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAAAATGAGAGCGAAGGACACGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAGTACGGCTTCAGAGAGGGCCGCTCGACTATCGACGCAATTCTGCGCGTGCGGGCCCTCTCCGATGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCCGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGACCCCTCCCCGGGCTCAGCGTAATTTGTTACGCTGACGACACGTTGGTCGTAGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACCAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGCTCTTTCACGGGCCGGGACGAGCGCCGCCTGTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACCGGTCTTCGGTACCTCGGCCTCGAACTGGACGGTCGGTGGAACTTCCGCGCTCACTTTGAGAAGTTGGGCCCTCGGCTGATGGCAACGGCCGGCTCTTTGAGCCGGCTCCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGCGCGCCCGTATGGTGCCACGCCCTGACCCGCCAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGGAAGGGCGCCCCGGCGAAGGAGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGTACCGTCGAGGCGGTCCGTCCGGTCCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAAATGCTTACCGGCCACGGTTGTTTTGGCCGGTACTTGCATAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATAGGTGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTTGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATATCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCTCCTGTAG
Protein
MIPKRFAIITTXRVPPAPRGRIPPCGRAIGRTLPHRFWGGTHCHAEGGDSTGRVRDRVPTVRLERCESLISLYSARSSARGDASSGRETPALFIDTRQRTRRKRKSARRPASSAPSDSSEGEPASAKYMALAEGPAAAAAPPATDCDDSLPRGLAAASSAHSRAACRETKNREKMGEVERLERSLTEVGPSDPLRACNIVKDMVATIATKSAKGLKGDYVRALKSGAATLEERIKDVVDRTTTTETAGLRQEVALLHARLEEVSIENGQLRTENGQLRVDMAELRTMVADLMERQRSSAPAPPPPEAEENQEAEEQRRQLLILEARSSTVERARPPLAHEAKNGAPIPAPRRIVAAKTYSGPKKSATPAKIPAATASTSAAARASKSAPAKKPTSAPTPSQPAKAGPGRSRNKKKGGVNAAKPALTPQPRPLPPAPANMNEAWTTVVRRGPKKVAVPAAPRPKPAPAATAPRQEGRAEPRGRPGRRRPRAPRSAAVVVELLPAAKERGITYHEVMTQARGGVNVDALGVEGGIKVRQTANGARLIECPGPNTNAAAEKLAARLREILPDPEVVRIARPVKMGEVKITGLDECATKEEVASAIASQGNCALADVKVGELRATYSGTRTAWARCPIATANLLATPPQGRPSDSPGRLRVGWVVAHVQLQDARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKKKPAAKRAAGEAQDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWMGDVDGSVAIVLRQSAALPPLEMVARGPGYVAARIDGTVVIGVYFSPNRSLAEFERFLGGLEALLHRLGSHPVIVAGDFNAKCTAWGSPRTDARGEALSEWAIATGLCLLNRGTVATCVRWNGESHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLREECVRARRRSARHRRRRRRDVAFAETAAQLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPRGRPYKMVRRKLQPWALPMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSKMRAKDTAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPVGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFEKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPGEGVVRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRLL

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
PDB
1WDU     E-value=2.49382e-09,     Score=155

Ontologies

Topology

Length:
1797
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.14192
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1797
 
 

Population Genetic Test Statistics

Pi
114.184195
Theta
129.716079
Tajima's D
1.708702
CLR
0.05478
CSRT
0.829408529573521
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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