SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12250
Annotation
PREDICTED:_uncharacterized_protein_LOC106709215_isoform_X2_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 1.398 PlasmaMembrane   Reliability : 1.842
 

Sequence

CDS
ATGATAATTGGATCTAATATCTTTTGGGATCTGCTCGGGACGCGAAAGATCAATCTGGGAGATAACATCTCGATCCTCTGGGAAACTCGACTTGGCTGGTTGGTGGTTTCCGGGAATCTAAGTGATGGTCATGAATATGCTCCCCTAATGTGCAACTTTACAAAACTTACAGACATTTCTCAAGATCTTGATCTCGGCGTTGATGACACTCAGAACTTGCTGTCGCGGTTCTGGCAGCCGAAGGAAGTTGGCCTTAAGTCATCATACTCCGAGGAGGAACGAAAATGTGAAGAACATTTCGAGGCGTTGGACATTAAGAAGAAAGTTGCCGCCGCAGAGCTCGCCTCCGCCAGGATGCCTCTGCGCAAGTGGAAGTCCAACGATCCTCTACTCTGTCTTACCGATGCGTCGCAAAGCTCCTATGGTGCTTGCCTTTACGCGCGAAGCGCGAACGTGTATGGACGAATCAAGGTCTCGTTACTTATGGCCAAGAGTAAAGTGGCTCCATTAAAGCCAACGACGATTCCTCGGTTGGAGTTCTGCGGGGCTCTGGTAGGAGTGCGCCTCTATGAGAAGGCTATTGATTTCGGCCGATTCTCAAACCTATCTGGACTAAAACGTACTGTAGCCTATGCATTGAGATTCATAAATTTATGCAAAAAGCTATATCCACAAACCAGCCATTTAAGCTCTAAAGAGCTACAGAACGCTTTGAACTTGATTATTAGGAAAGCTCAGTCTGAGTCGTTCGTCGAATACAAGCTCCTAACTCAGGGACATTCGTTATCTCCTAAAAGTCCCCTCAACAAGTTCAATGTCTTTCTTGATGACGCTCAAATTATGCGTGTTGGTGGCAGGTTTGGAAACGCGTCGGAGTTTTCGTATGAGAAAAAATATCCTATAATCCTACAGTCCACTCACATTCTCACAAAACTCGTATTCAAGGCTGAACATATTAAGCTTATGCACGCTGAACCCCAACTATTATTAGCTTCTATAAGAGAAGTCTACTGGCCTATTGGCTGTCGCAATTTGCCCAAGGCCACTTACCATAATTGTATAAGATGTACTCGCATGCGAGCACAAACAGTTTCTCCTCTTAAGGGAAATTTACCTGTGTACCGCTTCACTCCTGATCGCCTGTTCGAGTGTGTAGGCATCGACTATGCTGGACCCATCTCGTCCGTTAACCGCCTTGGTCAAGGTTGTAGAATCGTTAAGGTCTCCATCGCGATTTTTGAATTGATCACTGTCCTAACGCAAATCGAAGCAATATTGAATTCTCGGCCGCTGACTCCACTATCAAGCGATCCCGATGACATGATGCCGCTTATCCTGGGCATTTTCTCATTGGCCAACCCCTTACTGCAATGCCTGCTGCTGAGTACAAGGACTGCCGACTAA
Protein
MIIGSNIFWDLLGTRKINLGDNISILWETRLGWLVVSGNLSDGHEYAPLMCNFTKLTDISQDLDLGVDDTQNLLSRFWQPKEVGLKSSYSEEERKCEEHFEALDIKKKVAAAELASARMPLRKWKSNDPLLCLTDASQSSYGACLYARSANVYGRIKVSLLMAKSKVAPLKPTTIPRLEFCGALVGVRLYEKAIDFGRFSNLSGLKRTVAYALRFINLCKKLYPQTSHLSSKELQNALNLIIRKAQSESFVEYKLLTQGHSLSPKSPLNKFNVFLDDAQIMRVGGRFGNASEFSYEKKYPIILQSTHILTKLVFKAEHIKLMHAEPQLLLASIREVYWPIGCRNLPKATYHNCIRCTRMRAQTVSPLKGNLPVYRFTPDRLFECVGIDYAGPISSVNRLGQGCRIVKVSIAIFELITVLTQIEAILNSRPLTPLSSDPDDMMPLILGIFSLANPLLQCLLLSTRTAD

Summary

Pfam
PF05380   Peptidase_A17        + More
PF17921   Integrase_H2C2
Interpro
IPR041588   Integrase_H2C2        + More
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       
SUPFAM
SSF53098   SSF53098       
ProteinModelPortal

Ontologies

GO

Topology

Length:
467
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7.01835
Exp number, first 60 AAs:
0.00145
Total prob of N-in:
0.06398
outside
1  -  467
 
 

Population Genetic Test Statistics

Pi
343.737075
Theta
166.004017
Tajima's D
3.078949
CLR
0
CSRT
0.980950952452377
Interpretation
Uncertain
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