Gene

KWMTBOMO12243

Pre Gene Modal

BGIBMGA014196

Annotation

SCF_apoptosis_response_protein_[Bombyx_mori]

Location

Bomo_Chr20(+):10319670-10322953      View in EpiBrowser

Full name

Protein SYS1 homolog      

Location in the cell

PlasmaMembrane   Reliability : 4.587

CDS

ATGTCGAAAATTAAAAAGTTCAGTGGCTCATTCCGCTATACGCAATGGGACCCTTGTTTGATAATATTTCAAATAGTGGCAATGCAGTCTGTAATGTACCTGTCTCTTAGTCTGCTCGTGGCCATCATGCAGGACTTGACCGGCTCCACGAGAACTTTGGATCATTTATTTGAATACCATGAGCTACACATAGTAGATAACGAAGGAAGGGCAGTGATATTAGCGTTTGTTTTCAATGCAGTCATCGGTGCCTTTGCATTATGGATGATTGTTGGACGAACAAAGCTGTGCTTGGATTTTAGTTGCACATACCACGGACTTCATTTGATCGCATGCTGGTATTACAACGGAAGTTTCCCGACAACTTTCTCGTGGTGGACGTTGAACATAGCCTGTGGAGCTATAATGTGTGTGGCAGGCGAGTTCTTGTGCCTGAGGACTGAGTTGCAAGCGATACCCCTCAGTAACATAGGTGCTAAAGTGGACTTATGA

Protein

MSKIKKFSGSFRYTQWDPCLIIFQIVAMQSVMYLSLSLLVAIMQDLTGSTRTLDHLFEYHELHIVDNEGRAVILAFVFNAVIGAFALWMIVGRTKLCLDFSCTYHGLHLIACWYYNGSFPTTFSWWTLNIACGAIMCVAGEFLCLRTELQAIPLSNIGAKVDL

Description

Involved in protein trafficking.

Similarity

Belongs to the SYS1 family.

Feature

chain  Protein SYS1 homolog

Uniprot

Q1HPQ8   A0A2W1BC03   A0A2A4J073   A0A2H1V991   S4NK43   A0A194QFQ0   + More
A0A0N1PFZ0   A0A1E1VXY8   A0A212ENB9   A0A0L7KYK3   A0A1W4XGC2   A0A3S2P4X7   D6WSS9   A0A0T6BD21   A0A2P8Z3M1   A0A067REF0   A0A1L8DUL8   A0A1B6E3R4   A0A0K8TPI2   J3JU54   U4U6R0   A0A1B0GNJ4   A0A1B6GYR4   E0VH92   E2B867   N6TI10   A0A023EHI3   Q16L00   A0A1S4FXK3   A0A2M4ARH8   A0A2M3ZJ83   A0A182F6S4   W5JKY2   A0A151IIJ5   A0A195EBX9   E2A1K7   T1DRS7   A0A182XVT2   F4WNK0   A0A158NUC2   A0A2R7VYS9   A0A182XBE8   A0A195B8B6   A0A026WK02   A0A084VHK9   E9J096   A0A182VYX7   A0A182PKH4   A0A1Q3FXP6   A0A182RPW3   A0A182VDB8   A0A182TZL6   A0A182KLV7   Q7PYJ7   A0A182I089   A0A232FJF6   A0A2M3ZC69   K7IWC2   A0A195FVW3   A0A151WVT2   A0A182NS91   A0A182Q447   A0A182KAH3   A0A182ILL0   U5EWV6   B3LWX1   A0A0A1WZQ1   W8BWK5   B3P4V4   A0A0K8VAV0   A0A034V163   A0A0C9RPD0   A0A088AHZ5   B4KCP7   A0A2A3E171   B4M506   B4HL41   B4QY04   Q9VHP1   B4JSS3   B4PT80   A0A154PFI5   B4NLA9   A0A1W4W3G6   A0A3B0JLL1   A0A0L7QXX0   B4G459   A0A182MW44   A0A0M4EKJ7   Q297N7   A0A1I8MQF0   A0A0B4KFH6   A0A0P4VV29   R4FMV4   A0A0V0GAI9   A0A069DP14   A0A0A9XUM8   A0A224XYV8   A0A1W4VQS1   A0A1I8Q781  

Pubmed

19121390    28756777    23622113    26354079    22118469    26227816    + More
18362917    19820115    29403074    24845553    26369729    22516182    23537049    20566863    20798317    24945155    17510324    20920257    23761445    25244985    21719571    21347285    24508170    30249741    24438588    21282665    20966253    12364791    14747013    17210077    28648823    20075255    17994087    25830018    24495485    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    25315136    27129103    26334808    25401762   

EMBL

BABH01035851    BABH01035852    DQ443344    ABF51433.1    KZ150152    PZC72819.1    + More
NWSH01004417    PCG65146.1    ODYU01001333    SOQ37371.1    GAIX01013444    JAA79116.1    KQ459053    KPJ04239.1    KQ461157    KPJ08093.1    GDQN01011458    JAT79596.1    AGBW02013670    OWR43005.1    JTDY01004389    KOB68220.1    RSAL01000405    RVE41891.1    KQ971352    EFA07645.2    LJIG01001739    KRT85201.1    PYGN01000212    PSN51089.1    KK852686    KDR18454.1    GFDF01003955    JAV10129.1    GEDC01004726    JAS32572.1    GDAI01001545    JAI16058.1    BT126766    AEE61728.1    KB632095    ERL88757.1    AJVK01029493    GECZ01005092    GECZ01002208    JAS64677.1    JAS67561.1    DS235165    EEB12748.1    GL446286    EFN88069.1    APGK01025891    KB740605    ENN80039.1    GAPW01005247    JAC08351.1    CH477929    EAT34984.1    GGFK01010053    MBW43374.1    GGFM01007845    MBW28596.1    ADMH02001255    ETN63409.1    KQ977477    KYN02472.1    KQ979074    KYN22733.1    GL435766    EFN72680.1    GAMD01000520    JAB01071.1    GL888237    EGI64193.1    ADTU01002846    KK854144    PTY12091.1    KQ976565    KYM80487.1    KK107167    QOIP01000010    EZA56345.1    RLU17419.1    ATLV01013177    KE524842    KFB37453.1    GL767355    EFZ13757.1    GFDL01002696    JAV32349.1    AAAB01008987    EAA01529.3    APCN01002055    NNAY01000110    OXU30876.1    GGFM01005297    MBW26048.1    KQ981215    KYN44571.1    KQ982706    KYQ51877.1    AXCN02000204    GANO01002797    JAB57074.1    CH902617    EDV43810.1    GBXI01010434    JAD03858.1    GAMC01002953    JAC03603.1    CH954181    EDV49898.1    GDHF01016337    JAI35977.1    GAKP01022733    JAC36219.1    GBYB01010275    JAG80042.1    CH933806    EDW15896.1    KZ288478    PBC25274.1    CH940652    EDW59717.1    CH480815    EDW43005.1    CM000364    EDX13741.1    AE014297    AY071479    KX532037    AAF54261.1    AAL49101.1    ANY27847.1    CH916373    EDV94813.1    CM000160    EDW96541.1    KQ434893    KZC10601.1    CH964272    EDW84312.1    OUUW01000007    SPP83115.1    KQ414700    KOC63384.1    CH479179    EDW25097.1    AXCM01014559    CP012526    ALC45640.1    CM000070    EAL28168.2    AGB95758.1    GDKW01000702    JAI55893.1    GAHY01000818    JAA76692.1    GECL01001863    JAP04261.1    GBGD01003299    JAC85590.1    GBHO01022634    JAG20970.1    GFTR01002654    JAW13772.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000192223    UP000283053    UP000007266    UP000245037    UP000027135    UP000030742    UP000092462    UP000009046    UP000008237    UP000019118    UP000008820    UP000069272    UP000000673    UP000078542    UP000078492    UP000000311    UP000076408    UP000007755    UP000005205    UP000076407    UP000078540    UP000053097    UP000279307    UP000030765    UP000075920    UP000075885    UP000075900    UP000075903    UP000075902    UP000075882    UP000007062    UP000075840    UP000215335    UP000002358    UP000078541    UP000075809    UP000075884    UP000075886    UP000075881    UP000075880    UP000007801    UP000008711    UP000005203    UP000009192    UP000242457    UP000008792    UP000001292    UP000000304    UP000000803    UP000001070    UP000002282    UP000076502    UP000007798    UP000192221    UP000268350    UP000053825    UP000008744    UP000075883    UP000092553    UP000001819    UP000095301    UP000095300   

PRIDE

Q1HPQ8    Q9VHP1   

Pfam

PF09801   SYS1

Interpro

IPR016973   Integral_membrane_SYS1        + More
IPR019185   Integral_membrane_SYS1-rel       

ProteinModelPortal

Q1HPQ8   A0A2W1BC03   A0A2A4J073   A0A2H1V991   S4NK43   A0A194QFQ0   + More
A0A0N1PFZ0   A0A1E1VXY8   A0A212ENB9   A0A0L7KYK3   A0A1W4XGC2   A0A3S2P4X7   D6WSS9   A0A0T6BD21   A0A2P8Z3M1   A0A067REF0   A0A1L8DUL8   A0A1B6E3R4   A0A0K8TPI2   J3JU54   U4U6R0   A0A1B0GNJ4   A0A1B6GYR4   E0VH92   E2B867   N6TI10   A0A023EHI3   Q16L00   A0A1S4FXK3   A0A2M4ARH8   A0A2M3ZJ83   A0A182F6S4   W5JKY2   A0A151IIJ5   A0A195EBX9   E2A1K7   T1DRS7   A0A182XVT2   F4WNK0   A0A158NUC2   A0A2R7VYS9   A0A182XBE8   A0A195B8B6   A0A026WK02   A0A084VHK9   E9J096   A0A182VYX7   A0A182PKH4   A0A1Q3FXP6   A0A182RPW3   A0A182VDB8   A0A182TZL6   A0A182KLV7   Q7PYJ7   A0A182I089   A0A232FJF6   A0A2M3ZC69   K7IWC2   A0A195FVW3   A0A151WVT2   A0A182NS91   A0A182Q447   A0A182KAH3   A0A182ILL0   U5EWV6   B3LWX1   A0A0A1WZQ1   W8BWK5   B3P4V4   A0A0K8VAV0   A0A034V163   A0A0C9RPD0   A0A088AHZ5   B4KCP7   A0A2A3E171   B4M506   B4HL41   B4QY04   Q9VHP1   B4JSS3   B4PT80   A0A154PFI5   B4NLA9   A0A1W4W3G6   A0A3B0JLL1   A0A0L7QXX0   B4G459   A0A182MW44   A0A0M4EKJ7   Q297N7   A0A1I8MQF0   A0A0B4KFH6   A0A0P4VV29   R4FMV4   A0A0V0GAI9   A0A069DP14   A0A0A9XUM8   A0A224XYV8   A0A1W4VQS1   A0A1I8Q781  

KEGG

733000    K20318 protein SYS1 | (RefSeq) SCF apoptosis response protein

GO

GO:0015031   GO:0016021   GO:0000139   GO:0034067   GO:0005802   GO:0030173   GO:0006895   GO:0005829   GO:0043001   GO:0030904   GO:0042147   GO:0005737   GO:0006428   GO:0004812   GO:0000049   GO:0005975   GO:0004553  

PANTHER

PTHR12952  

Subcellular location

Golgi apparatus membrane  

Length:

163

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

67.54122

Exp number, first 60 AAs:

22.9368

Total prob of N-in:

0.13836

POSSIBLE N-term signal

sequence

outside

1  -  19

TMhelix

20  -  42

inside

43  -  71

TMhelix

72  -  91

outside

92  -  122

TMhelix

123  -  145

inside

146  -  163

 

 

Pi

238.778456

Theta

132.862304

Tajima's D

1.571835

CLR

0.464938

CSRT

0.80305984700765

Interpretation

Uncertain