Gene

KWMTBOMO12242  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014140

Annotation

PREDICTED:_protein_LTV1_homolog_[Bombyx_mori]

Location

Bomo_Chr20(-):10307845-10318059      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.089

CDS

ATGCCTAAAACAAAAAAGAAATTCATAGATAAAAAGAAAGCGGTGACGTTTAACCTAGTACACAGATCTCAAAGAGATCCTCTGGCCGCCGACGAAACAGCCCCGCAGCGAGTATTAGTGCCCGTAAACACAATCATCCCACCTACAAAGGATAAAGATACAGAATACACACCTGAACAACGCAAAGAGGAACAAAGGAAATACGGTATATATTACGACGATGACTACAATTATTTGCAGCATCTCAAAGACACAAAAGAGGTTACACTTGTGTTGCAGCCTAAAACTCCACATAAGAAGAAGCCAACGGAATCAACAAAAACTGATGAAATCATCGATGAAGATGAAGAGCCGTCCATTCCAGTCACAGAACGTCTGATGCTGCCCAGTTCGGTGTTCGCTTCTGAATTTGAAGAGGATGTTGGTTTACTCAATAAAGCTGCTCCACAGGGTTTACGCCTCGATCTGGATCCGGAAGTAGTGGCCGCTTTGGATGAAGATTTTGATTTTGATGATCCTGAAAATGAACTGGAAGACAACTTCATCGAATTGGCTATGGGAGACGATGATGAAGAAGCATATGATGAAGATGAAGGTTCATCGGGTGATGATAACTCTGAGAAAGCGTTCTCTTCAGACTTTGAATCAAATGATGAAAGCGATTCGCAGGATGAAGACAACCGCGGCAGGATGCCGACGTGGGCGCCGCCGGACAAGGACGACACCAAGTCGCGGTTCTCACAGTACTCGATGTCGTCCAGCATTATAAGGCGTAACCAGGGCTTGGAGCTACTGGACAACAGATTCGAAAAGATGTACGCCGAGTACGACGACACAGAGCTGGGTGCCCTCGACCTGGACGAGATCGAGGGTCACATGCCGGAGACGCACGCCATGCTGCTGCAGGCCGCCCAGGAGTTCGAGGCCTCGCAGAGGAAGTACAAGCTCGACAAGGAAACCGAAATGAGGAGGTTACAACGTCTTCAGGAAATCGAAGAAGAATCTGAAGAAGATGTCGTCACCGTGGAAGTTGAGCCCAAGGAGAGATGGGACTGCGAGACAATCCTCAGCACCTACTCCAACTTGTACAACCATCCGAAACTCATAGAGGAACCTAAGAAACCGAAGAGGATCGTGATAGATCCAAAAACTGGTATACCTAAGGATGTGCTCGGCACCGACGGTGGGAGGCTGACGGTGAAGGCGCTGGCCAGGTTCAACGCCATTAGCGAGGCCGCACCGCACGCCGCCGACGCCGCCAGCCGCGCCGACACGCTGCTGTCCACGCTCAGCGCGCTCTCCATAAGGCCCACAGACGAAAGTGTTGAAGAAAAGAGAGAACGAAAACGTTTATTGAAAGAATACAGACGAGAGAGGAGAATCGAGAAGAAAGCTAATAAAGAAGCTTTCAAGGAAGAGAAGAAACGGCAAGAGAAGATCATGATGAACAACAAGAATAATGTGCAAGGGAACAGAATATTGTAG

Protein

MPKTKKKFIDKKKAVTFNLVHRSQRDPLAADETAPQRVLVPVNTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDYNYLQHLKDTKEVTLVLQPKTPHKKKPTESTKTDEIIDEDEEPSIPVTERLMLPSSVFASEFEEDVGLLNKAAPQGLRLDLDPEVVAALDEDFDFDDPENELEDNFIELAMGDDDEEAYDEDEGSSGDDNSEKAFSSDFESNDESDSQDEDNRGRMPTWAPPDKDDTKSRFSQYSMSSSIIRRNQGLELLDNRFEKMYAEYDDTELGALDLDEIEGHMPETHAMLLQAAQEFEASQRKYKLDKETEMRRLQRLQEIEEESEEDVVTVEVEPKERWDCETILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKDVLGTDGGRLTVKALARFNAISEAAPHAADAASRADTLLSTLSALSIRPTDESVEEKRERKRLLKEYRRERRIEKKANKEAFKEEKKRQEKIMMNNKNNVQGNRIL

Cofactor

FAD

Uniprot

H9JX75   A0A2W1BC16   A0A2A4IUR1   A0A194QLB8   A0A0N0PB50   A0A1E1WGT3   + More
A0A212F4H7   A0A212ESW0   A0A2Z5U870   A0A0L7RE50   A0A0J7NML6   A0A026WQA4   D6WQU3   A0A336K3U7   A0A1Y1L875   E9IUT4   A0A158NZ60   A0A154PCV9   E2A666   A0A195AZ41   A0A336LKM3   A0A195F631   F4X357   A0A182YA34   A0A1S4H4D6   Q7PPS6   A0A182SDE6   B0XJL7   A0A182JRK4   A0A182X1U9   A0A182UY65   A0A182LQ23   A0A182TPU4   A0A182HFR3   A0A182M3R0   K7IUB3   A0A182VTB9   A0A232FER1   A0A023EVX4   A0A023ET53   A0A1Q3F9N9   U5EY17   A0A182P8H2   Q17MQ1   A0A182RLP6   A0A182MYD7   A0A182ITA9   A0A182R1E6   A0A226F1P4   A0A2P8Z569   C1BUM5   A0A195CVZ8  

Pubmed

19121390    28756777    26354079    22118469    24508170    30249741    + More
18362917    19820115    28004739    21282665    21347285    20798317    21719571    25244985    12364791    20966253    20075255    28648823    24945155    17510324    29403074   

EMBL

BABH01035849    BABH01035850    BABH01035851    KZ150152    PZC72829.1    NWSH01007296    + More
PCG63014.1    KQ459053    KPJ04236.1    KQ461157    KPJ08097.1    GDQN01004983    JAT86071.1    AGBW02010359    OWR48641.1    AGBW02012726    OWR44534.1    AP017505    BBB06810.1    KQ414613    KOC69001.1    LBMM01003266    KMQ93730.1    KK107151    QOIP01000003    EZA57294.1    RLU24326.1    KQ971354    EFA07437.1    UFQS01000039    UFQT01000039    SSW98125.1    SSX18511.1    GEZM01062351    JAV69794.1    GL766050    EFZ15661.1    ADTU01003909    KQ434864    KZC09098.1    GL437108    EFN71125.1    KQ976701    KYM77307.1    SSW98124.1    SSX18510.1    KQ981768    KYN35928.1    GL888608    EGI59157.1    AAAB01008933    EAA09915.4    DS233552    EDS30515.1    APCN01005567    AXCM01002293    AAZX01010653    NNAY01000357    OXU28929.1    GAPW01001134    JAC12464.1    GAPW01001135    JAC12463.1    GFDL01010827    JAV24218.1    GANO01000609    JAB59262.1    CH477204    EAT47971.1    AXCN02001048    LNIX01000001    OXA63705.1    PYGN01000190    PSN51643.1    BT078304    ACO12728.1    KQ977220    KYN04858.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000053825    + More
UP000036403    UP000053097    UP000279307    UP000007266    UP000005205    UP000076502    UP000000311    UP000078540    UP000078541    UP000007755    UP000076408    UP000007062    UP000075901    UP000002320    UP000075881    UP000076407    UP000075903    UP000075882    UP000075902    UP000075840    UP000075883    UP000002358    UP000075920    UP000215335    UP000075885    UP000008820    UP000075900    UP000075884    UP000075880    UP000075886    UP000198287    UP000245037    UP000078542   

PRIDE

H9JX75   

Pfam

PF04180   LTV        + More
PF00970   FAD_binding_6
PF00175   NAD_binding_1

Interpro

IPR007307   Ltv1        + More
IPR008333   Cbr1-like_FAD-bd_dom       
IPR039261   FNR_nucleotide-bd       
IPR001709   Flavoprot_Pyr_Nucl_cyt_Rdtase       
IPR017938   Riboflavin_synthase-like_b-brl       
IPR001834   CBR-like       
IPR017927   FAD-bd_FR_type       
IPR001433   OxRdtase_FAD/NAD-bd       

SUPFAM

SSF63380   SSF63380        + More
SSF52343   SSF52343       

Gene 3D

3.40.50.80    

ProteinModelPortal

H9JX75   A0A2W1BC16   A0A2A4IUR1   A0A194QLB8   A0A0N0PB50   A0A1E1WGT3   + More
A0A212F4H7   A0A212ESW0   A0A2Z5U870   A0A0L7RE50   A0A0J7NML6   A0A026WQA4   D6WQU3   A0A336K3U7   A0A1Y1L875   E9IUT4   A0A158NZ60   A0A154PCV9   E2A666   A0A195AZ41   A0A336LKM3   A0A195F631   F4X357   A0A182YA34   A0A1S4H4D6   Q7PPS6   A0A182SDE6   B0XJL7   A0A182JRK4   A0A182X1U9   A0A182UY65   A0A182LQ23   A0A182TPU4   A0A182HFR3   A0A182M3R0   K7IUB3   A0A182VTB9   A0A232FER1   A0A023EVX4   A0A023ET53   A0A1Q3F9N9   U5EY17   A0A182P8H2   Q17MQ1   A0A182RLP6   A0A182MYD7   A0A182ITA9   A0A182R1E6   A0A226F1P4   A0A2P8Z569   C1BUM5   A0A195CVZ8  

PDB

6G53     E-value=4.55192e-28,     Score=311

KEGG

101737819    K14798 protein LTV1 | (RefSeq) protein LTV1 homolog

GO

GO:0031902   GO:0030688   GO:0034448   GO:0042274   GO:0000056   GO:0005634   GO:0016491   GO:0016021  

PANTHER

PTHR21531  

Length:

494

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00851

outside

1  -  494

 

 

Pi

289.286519

Theta

180.671672

Tajima's D

2.19762

CLR

0.412396

CSRT

0.909054547272636

Interpretation

Uncertain