Gene

KWMTBOMO12239

Pre Gene Modal

BGIBMGA014142

Annotation

PREDICTED:_trafficking_protein_particle_complex_subunit_12_[Bombyx_mori]

Location

Bomo_Chr20(-):10275951-10287669      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.979

CDS

ATGGATAATAAACCGTCATTGAGTCAATATTTCGGAGGATCAGAGATACCACCAGCTTCTCAGTTCTTCGACGAAATCGGAACATCGCCATCAGATATGATACAAAGCGTTTATTTAGGTGAAAGCGAAGGGTCTCGAACAACAGCACCCAGTGTTTTCACGTCAAGTACGTCAGCAACATTTTCTCAACCGTCCACTCTTGATGAAGTCACTTTTTCAAATGTTGTACCCACTGTGAGTGGGACCACATCTCTACCTGCCACCAGCTTGCCTGATCCATCAACGTTTTTCGATACAATCGGCCCTGAACCTACTATAGGGCTGACAAAACCTGTAACAACTACAGCACTGACTGATGCTATGGACGGATTGAGTATTAAGAATCAACCTGTAGACAAAGATGCAGAAAGAAGACGGGACGCTTGGATACCCAATGAAGAAGCCAAGAAGACATTGATGAAGGCACAATCGTCACCTAAAGGTTCATTTTTCCCTGAGAGAGAAGTGTTGACCATGCCAGGATTGGTGCTTGAAGAAGAACTGGCGGACGCGTTACAAGAGGTGGCGGTGAAGTACCTGGGCGTGAGCTGCGCGGGCAGCCGCGGGGTGGTGCGCGCCGACCACGTGACCCGGGACGAGCCCGGCCTCCGCGAGCTCATCCGCACCGGGTACTTCAGGGCGGCCGTCAACCTCACCGCGGTGCTCATCAGCGCCGCCGGACAGGGCGTGGGACGGATGCACAGACCCACGAAGCACACGCCGCGCTCCCTCCAGCTCTGGTTGACGAGGTTCTCCCTGATGCTGAGGATCAAGCTACATGAACCCCTGATCAGGGAGGCGGAGCAGTTCGGCGACTGCACCAAACCCGACATGTTTTACCAGTTCTACCCGGAGTCTTACGAGAACCGTCCGGGATCCCTCGTTCCTTTCTCGCTGAGGCTACTCCTGGCCGAGATACCGGGGCACGTGGGCAAGCCGGACGAGTCCATGGACAGACTATACGCGATGCTCGATATTATACAGCAGATGCTGTCGAATCTCCGCGACGGAAAGACCGAGGACGGCTCTGGTCTCCTCTCGTCGGAGCAGGATAAGGCGGAGTCGATACGTTTGTGGATGGGGAGGGAGACGAGGGTGTATCATTCGATCGTCAACTGCGCTATAGCCCTGAAGGATTACAGGCACGCTTCCAACGTGCTGTCCTCGTTGGAACAGGCGTGCAGCACGGCCGGTCAGAAGCGAGCCGTGTGCAGCGCGCTATGCCGCCTCGCGCTGCTGGCCGGGCACGTGACGGCCGCACGTGCGCACTGCCGCCGCGCCACCGAGAACCGGACGCACGTATGTCCGACGCCCGACGTGCGCGAGTACGTGGACCTCGGGCTGGTGGCGATGGCTCAGGGGAAGTACGAAGACGCCTACAACGACTTCGTGAGGGCGGCCGACCAGGAACCCACGAACATTATGGTCGCGAACAACATCTCCGTGTGCCTGTTGTACATGGGTCGCCTGAAGGAGGCCATATCGGTGCTGCAGAAGGCGATAAAGAGTGACCCGGAACGCGGCCTCAACGAGAGCCTCCTCGTCAACCTGTGCACGCTTTACGAACTGGAGTCGTCCAAGACGAACGAGAAAAAGCTCAATCTGTTGCGGATGCTGTGCAAGTACAAGAGCGACACGATACCGAACGTTCTCGAATGTCTGAAGCTCGCGTAG

Protein

MDNKPSLSQYFGGSEIPPASQFFDEIGTSPSDMIQSVYLGESEGSRTTAPSVFTSSTSATFSQPSTLDEVTFSNVVPTVSGTTSLPATSLPDPSTFFDTIGPEPTIGLTKPVTTTALTDAMDGLSIKNQPVDKDAERRRDAWIPNEEAKKTLMKAQSSPKGSFFPEREVLTMPGLVLEEELADALQEVAVKYLGVSCAGSRGVVRADHVTRDEPGLRELIRTGYFRAAVNLTAVLISAAGQGVGRMHRPTKHTPRSLQLWLTRFSLMLRIKLHEPLIREAEQFGDCTKPDMFYQFYPESYENRPGSLVPFSLRLLLAEIPGHVGKPDESMDRLYAMLDIIQQMLSNLRDGKTEDGSGLLSSEQDKAESIRLWMGRETRVYHSIVNCAIALKDYRHASNVLSSLEQACSTAGQKRAVCSALCRLALLAGHVTAARAHCRRATENRTHVCPTPDVREYVDLGLVAMAQGKYEDAYNDFVRAADQEPTNIMVANNISVCLLYMGRLKEAISVLQKAIKSDPERGLNESLLVNLCTLYELESSKTNEKKLNLLRMLCKYKSDTIPNVLECLKLA

Uniprot

A0A2H1V0P3   A0A2W1BJ11   A0A2A4J360   A0A194QFB7   A0A212FIJ7   A0A0N0PCP1   + More
V5GCW3   D6WPG0   U4UQG0   N6TWI2   A0A1Y1KKS6   A0A1W4XHY4   A0A1B6BYH9   A0A2J7PS11   A0A2J7PS04   A0A2J7PS14   A0A2R7WXT7   T1HMT7   A0A1B6KVC4   A0A067R6H4   A0A0V0G9Y9   A0A069DUF9   A0A224XBV9   A0A0K8S371   A0A0A9XAH5   A0A0P4VNY7   A0A026VX52   A0A146KLC0   A0A146LLA5   A0A3L8DGQ1   A0A1B6I8Y1   E2ABT3   A0A154PEY2   A0A0N7ZC98   A0A0J7NGY9   A0A0P4W5J3   A0A0P4WC21   E9IED2   A0A195BZH9   A0A158NP13   E2BS49   A0A195DX02   A0A310S5J5   A0A195EZZ2   F4W8X7   A0A0C9QWN8   A0A232FJ39   A0A151ILD2   A0A2A3E2T3   A0A151X8F6   K7J170   A0A088ADV5   E0VWB0   T1J077   A0A1B0DCJ2   A0A2R5L4M2   A0A182IW73   A0A1B6M3G4   A0A1I8N0H4   A0A293M422   K1PZM5   A0A2M4AN58   A0A1Z5KVB0   A0A2M4AN87   A0A1I8N0J4   T1PJB0   A0A1E1XBL9   A0A0L0CJW7   A0A1E1XL09   A0A131XXQ9   A0A1I8PVJ0   A0A1I8PVM2   W5L350   A0A226F2K3   V5GZ85   A0A1A9WDI6   A0A182H370   A0A1S3IL77   A0A3B4DRX5   A0A1D2NIX9   A0A210QAJ3   A0A224YKU9   A0A131YCY1   Q16HT7   A0A1S4G0D1   L7M0X7   A0A131YW63   W5JU93   A0A182W2G0   U4UHS3   A0A1B0AD56   A0A182K617   N6TYS3  

Pubmed

28756777    26354079    22118469    18362917    19820115    23537049    + More
28004739    24845553    26334808    25401762    27129103    24508170    26823975    30249741    20798317    21282665    21347285    21719571    28648823    20075255    20566863    25315136    22992520    28528879    28503490    26108605    29209593    25329095    25765539    26483478    27289101    28812685    28797301    26830274    17510324    25576852    20920257    23761445   

EMBL

ODYU01000126    SOQ34381.1    KZ150152    PZC72826.1    NWSH01003436    PCG66309.1    + More
KQ459053    KPJ04238.1    AGBW02008371    OWR53560.1    KQ460522    KPJ14161.1    GALX01000491    JAB67975.1    KQ971354    EFA06807.1    KB632322    ERL92356.1    APGK01058321    KB741288    ENN70657.1    GEZM01084002    JAV60860.1    GEDC01030990    JAS06308.1    NEVH01021939    PNF19124.1    PNF19114.1    PNF19127.1    KK855916    PTY24354.1    ACPB03008885    GEBQ01024578    JAT15399.1    KK852854    KDR14968.1    GECL01001395    JAP04729.1    GBGD01001126    JAC87763.1    GFTR01006541    JAW09885.1    GBRD01018159    JAG47668.1    GBHO01027776    JAG15828.1    GDKW01002536    JAI54059.1    KK107648    EZA48337.1    GDHC01021275    JAP97353.1    GDHC01010604    JAQ08025.1    QOIP01000008    RLU19353.1    GECU01024328    GECU01015307    JAS83378.1    JAS92399.1    GL438356    EFN69110.1    KQ434878    KZC09858.1    GDRN01070565    JAI63848.1    LBMM01005134    KMQ91790.1    GDRN01070560    JAI63852.1    GDRN01070561    JAI63851.1    GL762576    EFZ21088.1    KQ976394    KYM93318.1    ADTU01022032    GL450151    EFN81441.1    KQ980167    KYN17366.1    KQ769818    OAD52814.1    KQ981891    KYN33793.1    GL887974    EGI69336.1    GBYB01008149    JAG77916.1    NNAY01000154    OXU30499.1    KQ977120    KYN05562.1    KZ288416    PBC26053.1    KQ982422    KYQ56619.1    DS235818    EEB17666.1    JH431734    AJVK01005130    GGLE01000264    MBY04390.1    GEBQ01009501    JAT30476.1    GFWV01008996    MAA33725.1    JH815744    EKC27088.1    GGFK01008890    MBW42211.1    GFJQ02007960    JAV99009.1    GGFK01008923    MBW42244.1    KA648887    AFP63516.1    GFAC01002548    JAT96640.1    JRES01000303    KNC32507.1    GFAA01003540    JAT99894.1    GEFM01004791    JAP71005.1    LNIX01000001    OXA63708.1    GANP01008548    JAB75920.1    JXUM01106765    KQ565082    KXJ71364.1    LJIJ01000027    ODN05233.1    NEDP02004406    OWF45748.1    GFPF01007110    MAA18256.1    GEDV01012621    JAP75936.1    CH478142    EAT33817.1    GACK01008246    JAA56788.1    GEDV01006151    JAP82406.1    ADMH02000120    ETN67711.1    KB632169    ERL89425.1    APGK01049518    APGK01049519    KB741156    ENN73506.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000053240    UP000007266    UP000030742    + More
UP000019118    UP000192223    UP000235965    UP000015103    UP000027135    UP000053097    UP000279307    UP000000311    UP000076502    UP000036403    UP000078540    UP000005205    UP000008237    UP000078492    UP000078541    UP000007755    UP000215335    UP000078542    UP000242457    UP000075809    UP000002358    UP000005203    UP000009046    UP000092462    UP000075880    UP000095301    UP000005408    UP000037069    UP000095300    UP000018467    UP000198287    UP000091820    UP000069940    UP000249989    UP000085678    UP000261440    UP000094527    UP000242188    UP000008820    UP000000673    UP000075920    UP000092445    UP000075881   

Pfam

PF13181   TPR_8        + More
PF00515   TPR_1
PF07719   TPR_2
PF13873   Myb_DNA-bind_5

Interpro

IPR019734   TPR_repeat        + More
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR001440   TPR_1       
IPR013105   TPR_2       
IPR026811   CIZ1       
IPR028002   Myb_DNA-bind_5       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2H1V0P3   A0A2W1BJ11   A0A2A4J360   A0A194QFB7   A0A212FIJ7   A0A0N0PCP1   + More
V5GCW3   D6WPG0   U4UQG0   N6TWI2   A0A1Y1KKS6   A0A1W4XHY4   A0A1B6BYH9   A0A2J7PS11   A0A2J7PS04   A0A2J7PS14   A0A2R7WXT7   T1HMT7   A0A1B6KVC4   A0A067R6H4   A0A0V0G9Y9   A0A069DUF9   A0A224XBV9   A0A0K8S371   A0A0A9XAH5   A0A0P4VNY7   A0A026VX52   A0A146KLC0   A0A146LLA5   A0A3L8DGQ1   A0A1B6I8Y1   E2ABT3   A0A154PEY2   A0A0N7ZC98   A0A0J7NGY9   A0A0P4W5J3   A0A0P4WC21   E9IED2   A0A195BZH9   A0A158NP13   E2BS49   A0A195DX02   A0A310S5J5   A0A195EZZ2   F4W8X7   A0A0C9QWN8   A0A232FJ39   A0A151ILD2   A0A2A3E2T3   A0A151X8F6   K7J170   A0A088ADV5   E0VWB0   T1J077   A0A1B0DCJ2   A0A2R5L4M2   A0A182IW73   A0A1B6M3G4   A0A1I8N0H4   A0A293M422   K1PZM5   A0A2M4AN58   A0A1Z5KVB0   A0A2M4AN87   A0A1I8N0J4   T1PJB0   A0A1E1XBL9   A0A0L0CJW7   A0A1E1XL09   A0A131XXQ9   A0A1I8PVJ0   A0A1I8PVM2   W5L350   A0A226F2K3   V5GZ85   A0A1A9WDI6   A0A182H370   A0A1S3IL77   A0A3B4DRX5   A0A1D2NIX9   A0A210QAJ3   A0A224YKU9   A0A131YCY1   Q16HT7   A0A1S4G0D1   L7M0X7   A0A131YW63   W5JU93   A0A182W2G0   U4UHS3   A0A1B0AD56   A0A182K617   N6TYS3  

PDB

3NF1     E-value=0.000220853,     Score=107

KEGG

101741663    K20309 trafficking protein particle complex subunit 12 | (RefSeq) trafficking protein particle compl

GO

GO:0004180   GO:0004175   GO:0005515   GO:0008168   GO:0004822   GO:0005524   GO:0005737   GO:0006428   GO:0004812   GO:0000049   GO:0005975   GO:0004553  

PANTHER

PTHR15491  

Length:

570

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.33575

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01485

outside

1  -  570

 

 

Pi

218.664683

Theta

138.308615

Tajima's D

1.495246

CLR

0.260751

CSRT

0.780910954452277

Interpretation

Uncertain