SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12237  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA014143
Annotation
PREDICTED:_ATP-dependent_RNA_helicase_DDX24_[Bombyx_mori]
Location
Bomo_Chr20(-):10242200-10257759      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.194
 

Sequence

CDS
ATGAGTAAAAAGCTGAAAGATTTGAAGTGGGAAACTGTTCCACTAGAAGGCTTTCCAGCTTCCGTCACAGATAAGCTGCAAGGTTTTGTAGGTCTTGAAGAATGCACCTCTTACGGTCTGGACAGGGAAAACAAGAAGCCGAAAAAACACAAAGAAAATGCAAATAAAAGAAAAAGAGAAGCAAAAAGCACCAAAGCACAACAACCAGTAAAAAAACTTAAATTAAGTAATGGTTTTATAGTAGAAACTTGTAATACCTCCACTCCGTCACTAAGTAATGAAATAGCAACAAGCAATGTCTATGAACAAAAAATTAAAGGAAAGAAACCAATAAAAGGAATGAATATTAAAAAAAAGAAACATAAATTAGGGGAAGCTACGTCTTCACAGTCCGACGTTACTCCTCAGGATATGTTAGCTTGGGCCGAGTTCCAGCTGCCAGATTCAATCATGAAAGCGCTGACTGAAATGGGCTTTAAGCAACCAACAAAAATTCAGCAACTGTCATTACCTGCAGCCATACATGGACGAAGAGATATTCTTGGAGCGGCCGAGACAGGTAGTGGTAAAACTTTAGCTTTCGGTCTACCTATATTATCAGGAATTCTAGACCTAAAAGAAAAAGCTGATCAGAAAGGCTTAGATGTTTATGACATACAATACAAAAAGACATCTGCCAAAAAGAAACCAGAAGAGAAAGAATTGAAAAAGAGTAACAAAATCAGTAAAAACAAGGTGCAAATTAAAAAAGATAACACTAGTAATAAAGATTCTGAAGAAGGTTATGGTAGTTCAGAATCAACTGATAAAATGAAAGATAAAGAAAAGAAAAGATATAAAGCTGCAGAAGATTATTTAGAAGAATATGAAATTCCAATCAAAAAAAGGAATGACTCTGATGAAGGTAATGATTCAGATGGTGAGAACTATGTTCACCTATCTGATATGCTAGATTCAGATGATTTGAAAGATGAAAGTGATGACAATGAACAGTCTGAGGATGATTTGGAATCTTCTGAAAATGATCAGTCTGATAATGATAAAAATGAAGAATTAAGTGATTATGGAAACCAATTAGATAGTAATGAGAGTGATGAAGGATTGGATGTTAATGCTAGTGATGTGGATTCCACTGATGGTCATGAAATGGATGTTGGGGATGGTGAGGATGACAAGTTACAAAGTCAAGGAACGGGCCTAGTCAAAGTGGTAGATGATGTGAAATTGCCACCTCACATGGAGGTCAGGACCGGCAAACCTTTATATGCACTGATACTAACTCCGACCAGAGAACTGGCCATGCAGGTCAGCAGGCATTTGATGGCTGTAGCCAAGTACACAGGTATAAGAATCGCGACAATAGTTGGAGGTCTGGCCGCGGTGAAGCAGGAACGGGTGCTCGGCAAAGGGCCAGAGATCGTGGTCGCCACCCCGGGCAGACTGTGGGAGCTACTGTCCCAGGGGCAGCCACATTTACAACAACTTTCAACCGTCAAATTCCTGGCCATCGACGAGACCGACCGCATGATAGAGAGGGGCCACTTCGAGGAGCTGCAACCCTTGCTGGAGAGGCTCAACGCGGACGACGACCGCCGCAGTACAAGGCAGAACTTCGTCTTCTCGGCAACCCTGACCATGGTGCACGAACTGCCCGCGCACATGCGGGGCAAGAAGGTGACAAAGCGAGGGAAGATATTAAACAGGAAAGTGGACAAGATGACATCGCAGCAGAAAATCAATAGATTGGTCAAAATGATTGGCATGACCGACCCCAAGGTGGTCGACATCACCGCGCAAAACCTGGGTGCTGCAGAGACCCTGACGGAGAGCAGGATCACGTGCTCCGTGCAGCACAAGGATGCGTATCTGTACTACGTGCTGAAGAGGCACCCCGGCAGGACGATCGTGTTCTGCAACTCCATCGGATGCGTCCAGAGGTTAGCGCAGTTATTCGGCATTCTGAAATGCCACCCCCTGCCCTTACACGCGAATATGCAGCAGAGGCAACGCCTGAAGAACTTGGAGAGGTTCCGTGACGACAAACACGGTGTGCTGATAGCCACGGATGTAGCTGCCCGCGGGCTCGACATCCCGGACGTGGACCACGTGGTGCACTACCAGGTGCCCAGGACGGCGGAGAGCTACGTGCACCGGAGCGGCCGCACCGCCCGCGCCAGCAAGGAGGGCCTCACCATACTGATGATGGAGCCCTCCGAGGCGTTCCTCTACGCGAAGCTCTGTCAGACCTTGAACAAGAAAACGGAACTGCCCCTGTTCCCGGTACAGTCTCACAGCCTGTCCCCGGTCAAGGAGCTGGTCGGCTTGGCCCGGGACATTGACGCTCTAGAGCTGAAGAAACGCCGCGCGGCCCAGTCCGTTGGATGGAGGGAGAAGGCCGCCAAGGAAATGGACATGATCGTAGACGACGATGACGCGCCAGTGAAACAGATAGACCCGTCTATCGAGAGGACGCTACGAGCCAAGAAGCGTCAGCTGGAGACCGCGATGGCGAGGCCGCTGTTCCCGCGAGGCTTCTCCTTCAAGTATCCAACCCTGAACGACCCTGCTGCGTTGGAGATGCCCCAAGAGAACGCATTGCAGGTGATGAAAAACGCAATACAATCCGGGGAATTGAAAAAGGACAAGAGAAAATCGAAGAACGCTCCTCTCCTGAAACTGGGTAAAGGAATAAAAAAACATAATATGAGACCCAAAAAGAGAAGTTAA
Protein
MSKKLKDLKWETVPLEGFPASVTDKLQGFVGLEECTSYGLDRENKKPKKHKENANKRKREAKSTKAQQPVKKLKLSNGFIVETCNTSTPSLSNEIATSNVYEQKIKGKKPIKGMNIKKKKHKLGEATSSQSDVTPQDMLAWAEFQLPDSIMKALTEMGFKQPTKIQQLSLPAAIHGRRDILGAAETGSGKTLAFGLPILSGILDLKEKADQKGLDVYDIQYKKTSAKKKPEEKELKKSNKISKNKVQIKKDNTSNKDSEEGYGSSESTDKMKDKEKKRYKAAEDYLEEYEIPIKKRNDSDEGNDSDGENYVHLSDMLDSDDLKDESDDNEQSEDDLESSENDQSDNDKNEELSDYGNQLDSNESDEGLDVNASDVDSTDGHEMDVGDGEDDKLQSQGTGLVKVVDDVKLPPHMEVRTGKPLYALILTPTRELAMQVSRHLMAVAKYTGIRIATIVGGLAAVKQERVLGKGPEIVVATPGRLWELLSQGQPHLQQLSTVKFLAIDETDRMIERGHFEELQPLLERLNADDDRRSTRQNFVFSATLTMVHELPAHMRGKKVTKRGKILNRKVDKMTSQQKINRLVKMIGMTDPKVVDITAQNLGAAETLTESRITCSVQHKDAYLYYVLKRHPGRTIVFCNSIGCVQRLAQLFGILKCHPLPLHANMQQRQRLKNLERFRDDKHGVLIATDVAARGLDIPDVDHVVHYQVPRTAESYVHRSGRTARASKEGLTILMMEPSEAFLYAKLCQTLNKKTELPLFPVQSHSLSPVKELVGLARDIDALELKKRRAAQSVGWREKAAKEMDMIVDDDDAPVKQIDPSIERTLRAKKRQLETAMARPLFPRGFSFKYPTLNDPAALEMPQENALQVMKNAIQSGELKKDKRKSKNAPLLKLGKGIKKHNMRPKKRS

Summary

Uniprot
H9JX78   A0A194QFQ4   A0A212FIK0  
Pubmed
19121390    26354079    22118469   
EMBL
BABH01035839    BABH01035840    BABH01035841    BABH01035842    KQ459053    KPJ04244.1    + More
AGBW02008371    OWR53558.1   
Proteomes
UP000005204    UP000053268    UP000007151   
PRIDE
H9JX78   
Pfam
PF00271   Helicase_C        + More
PF00270   DEAD
Interpro
IPR001650   Helicase_C        + More
IPR014001   Helicase_ATP-bd       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR027417   P-loop_NTPase       
SUPFAM
SSF52540   SSF52540       
CDD
cd00079  HELICc
ProteinModelPortal
H9JX78   A0A194QFQ4   A0A212FIK0  
PDB
5IVL     E-value=1.23557e-32,     Score=353

Ontologies

KEGG
101741522    K14805 ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase DDX
GO
GO:0003676   GO:0005524   GO:0004386   GO:0004822   GO:0005737   GO:0006428   GO:0004812   GO:0000049   GO:0005975   GO:0004553  

Topology

Length:
908
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03132
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00122
outside
1  -  908
 
 

Population Genetic Test Statistics

Pi
232.767516
Theta
27.302903
Tajima's D
0.077491
CLR
0.576336
CSRT
0.395030248487576
Interpretation
Uncertain
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