Gene

KWMTBOMO12230  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014190

Annotation

PREDICTED:_myrosinase_1-like_[Bombyx_mori]

Location

Bomo_Chr20(+):10136190-10146586      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.088

CDS

ATGACGGTACAAGCAACGGTTGTTTTATGCTTGCTGACGAAGGCGGCTTGGGGCGAGATGAAATTTCCACCTGGCTTCAGATTCGGGGCTGCAACCGCTGCTTATCAGATCGAAGGCTCCTGGAACGTGAGTGATAAAGCCGAGAGCGTATGGGATAGATTTACACATGAACATAAATATTACGTGGACTCTGGAAGCAATGGTGATGTCGCCTGCGACTCCTACAATAAGTGGAAGGATGATGTACGAATTGCAAAGGAGTTGAACTTACACTTCTATAGATTTTCGATCTCGTGGCCTCGTCTACTACCGACTGCGTTTTCAAATAAAATCAGCGACGACGGGAGAAATTACTACAATCAGTTGATCGATGCTCTCCTGGAAGAGGGTATAGAGCCATCGGTGACTCTGTTTCAATTGGATTTGCCTCAAAAATTGCAGGATCTGGGCGGCTGGGCAAACCCTTTAATAATCGATTGGTTCGCCAACTACGCGAGGGTGGTATTTTCTCTTTATGGAGACCGAGTGAAGACCTGGATAACTATTAATGAGCCCCTACTAATTTGTGAGGTGTCGTACAGCGATAGTAAAATGGCCCCTGGAATCAAATCCGTTGACTTAGGAAAATATTTGTGTGCCAAGAATGTTTTGTTAGCTCATGCCACAGCTTGGAGGATTTATGATGAGGAGTTCAGACCGAAGTATCACGGTAAAGTTTCCTTGACGAACGTTTTGATATGGTATGAACCAACTACGGACAACGATCGTGACCTTGCTGACTTGGCGAACCAGTTGTGTAATGGAATATATACGTATCCGATTTTCTCGAAAACCGGTAACTGGCCACAGTCTGTTATAAAAATAGTGGACGAAAGAAGCAAAATGTTGGGATACCCGTACTCTCTTCTCCCTGAGTTTACTAAAGAAGAAATCGAATTTATAAAAGGTACATACGACTTCTTCGGAATGAATTACTACATTTCAAAGTCAATAAGGAAGCCTCTGGTTAACGAACATATACCGTTGTGGCCTGTGGGAGTACCGATATTGGGTGCCATTTTGGAGAGTCCACCCACTTGGACGAATGGAGCTACGAAGTGGTTTTCAGTAAAATACATTTGTTCTTACGTAGCTTAA

Protein

MTVQATVVLCLLTKAAWGEMKFPPGFRFGAATAAYQIEGSWNVSDKAESVWDRFTHEHKYYVDSGSNGDVACDSYNKWKDDVRIAKELNLHFYRFSISWPRLLPTAFSNKISDDGRNYYNQLIDALLEEGIEPSVTLFQLDLPQKLQDLGGWANPLIIDWFANYARVVFSLYGDRVKTWITINEPLLICEVSYSDSKMAPGIKSVDLGKYLCAKNVLLAHATAWRIYDEEFRPKYHGKVSLTNVLIWYEPTTDNDRDLADLANQLCNGIYTYPIFSKTGNWPQSVIKIVDERSKMLGYPYSLLPEFTKEEIEFIKGTYDFFGMNYYISKSIRKPLVNEHIPLWPVGVPILGAILESPPTWTNGATKWFSVKYICSYVA

Similarity

Belongs to the glycosyl hydrolase 1 family.
Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

H9JXC5   H9JX79   A0A194QLC3   A0A194QH27   A0A2W1BMB0   H9JXC6   + More
A0A0N1IBS6   A0A3G1T1E9   A0A2A4J905   A0A2W1BC39   A0A2A4IWH6   A0A3S2N597   A0A2H1VC49   A0A194QFH9   A0A2A4IZ96   A0A194QFC2   H9JXC4   A0A2H1WZM4   A0A2W1BJB1   A0A2H1WLB6   A0A2W1BEU6   A0A2H1W6N8   H9JXC2   A0A0N1I6T9   H9JX80   A0A2H1WLJ0   G9F9G9   A0A194R3H3   A0A194PPG4   A0A3S2PE71   A0A194R3H6   H9JXC7   G9F9I3   A0A2H1VX30   A0A194PMG8   A0A2A4JPS5   A0A212FF90   A0A212FF93   A0A194PMT8   A0A212FBG8   A0A3S2NZ50   A0A1Y9GKT0   Q5TQY8   A0A194PNS3   A0A2A4JPI4   A0A2W1BWF3   A0A2A4IYR0   A0A194R8P7   A0A212FKW0   A0A1Y1K666   A0A194PPG9   H9JLY4   A0A2A4IZI1   B0WNN7   A0A194RQF8   A0A1Y1KBI8   A0A194R4S7   A0A2H1VF65   D0VYR9   A0A182U0B4   A0A1Y9IRY8   A0A194R365   A0A194PMT2   A0A194PJU3   A0A194R400   A0A1Y1K6D9   G9F9G4   A0A212EPH6   A0A212FIL5   A0A2H1V873   D0VYS0   A0A195EE04   A0A182T2U8   A0A2A4JPN8   H9JLY5   A0A1Y9IW73   D0VYS1   A0A1L8DQN1   A0A194R360   A0A182YP84   A0A2W1BD53   D0VYR8   D6X3T6   H9JMQ9   D6WPV3   J3JYA4   A0A194PRE4   A0A1S4G3W5   A0A212F3B1   A0A2A4JEG9   A0A026WLX1   A0A034VAL4   A0A194PU18   A0A182JGM2   D0VYR6   Q16WF2   A0A182LL23   D0VYR5   A0A034VEY7  

Pubmed

19121390    26354079    28756777    22118469    12364791    14747013    + More
17210077    28004739    19944757    25244985    18362917    19820115    22516182    23537049    24508170    25348373    17510324    20966253   

EMBL

BABH01035826    BABH01035827    BABH01035825    KQ459053    KPJ04241.1    KPJ04240.1    + More
KZ150152    PZC72823.1    BABH01035833    BABH01035834    BABH01035835    KQ461157    KPJ08092.1    MG992371    AXY94809.1    NWSH01002416    PCG68339.1    PZC72822.1    NWSH01005512    PCG64155.1    RSAL01000405    RVE41892.1    ODYU01001752    SOQ38385.1    KPJ04242.1    NWSH01004417    PCG65145.1    KPJ04243.1    BABH01035821    ODYU01012291    SOQ58525.1    PZC72820.1    ODYU01009444    SOQ53875.1    PZC72831.1    ODYU01006661    SOQ48703.1    BABH01035819    BABH01035820    KPJ08090.1    BABH01035816    BABH01035817    SOQ53877.1    JN033714    AEW46867.1    KQ460779    KPJ12242.1    KQ459598    KPI94624.1    RSAL01000077    RVE48784.1    KPJ12247.1    BABH01035838    BABH01035839    JN033728    AEW46881.1    ODYU01004975    SOQ45390.1    KPI94631.1    NWSH01000819    PCG74065.1    AGBW02008847    OWR52398.1    OWR52397.1    KPI94632.1    AGBW02009344    OWR51063.1    RSAL01000019    RVE52797.1    APCN01002262    AAAB01008960    EAL40075.2    KPI94633.1    NWSH01000883    PCG73729.1    KZ149936    PZC77130.1    NWSH01004958    PCG64548.1    KPJ12246.1    AGBW02007954    OWR54377.1    GEZM01091301    JAV56942.1    KPI94629.1    BABH01005437    NWSH01004583    PCG64896.1    DS232013    EDS31873.1    KQ459875    KPJ19634.1    GEZM01091305    JAV56935.1    KPJ12245.1    ODYU01001971    SOQ38904.1    AB508958    BAI50022.1    KPJ12248.1    KPI94627.1    KQ459601    KPI93701.1    KPJ12249.1    GEZM01091306    JAV56934.1    JN033709    AEW46862.1    AGBW02013459    OWR43376.1    AGBW02008370    OWR53561.1    ODYU01001184    SOQ37050.1    AB508959    BAI50023.1    KQ979074    KYN23032.1    PCG73726.1    BABH01005438    AB508960    BAI50024.1    GFDF01005306    JAV08778.1    KPJ12243.1    KZ150122    PZC73162.1    AB508957    BAI50021.1    KQ971326    EEZ97373.2    BABH01016738    KQ971354    EFA06168.1    APGK01045791    APGK01045792    APGK01045793    BT128228    KB741039    AEE63189.1    ENN74525.1    KPI93700.1    AGBW02010585    OWR48225.1    NWSH01001829    PCG69984.1    KK107159    EZA56631.1    GAKP01018616    JAC40336.1    KPI94630.1    AB508955    BAI50019.1    CH477568    EAT38910.1    AB508954    AB508956    BAI50018.1    BAI50020.1    GAKP01018617    JAC40335.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000283053    UP000007151    + More
UP000075840    UP000007062    UP000002320    UP000075902    UP000075903    UP000078492    UP000075901    UP000075920    UP000076408    UP000007266    UP000019118    UP000053097    UP000075880    UP000008820    UP000075882   

PRIDE

H9JXC5    H9JX79    H9JXC6    H9JXC4    H9JXC2    H9JX80    + More
H9JXC7    H9JLY4    H9JLY5    H9JMQ9   

Pfam

PF00232   Glyco_hydro_1        + More
PF00501   AMP-binding
PF13193   AMP-binding_C
PF00133   tRNA-synt_1
PF08264   Anticodon_1

Interpro

IPR033132   Glyco_hydro_1_N_CS        + More
IPR001360   Glyco_hydro_1       
IPR017853   Glycoside_hydrolase_SF       
IPR018120   Glyco_hydro_1_AS       
IPR000873   AMP-dep_Synth/Lig       
IPR025110   AMP-bd_C       
IPR002300   aa-tRNA-synth_Ia       
IPR014729   Rossmann-like_a/b/a_fold       
IPR001412   aa-tRNA-synth_I_CS       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002301   Ile-tRNA-ligase       
IPR033708   Anticodon_Ile_BEm       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       

SUPFAM

SSF51445   SSF51445        + More
SSF50677   SSF50677       
SSF47323   SSF47323       

Gene 3D

3.40.50.620     3.90.740.10    

CDD

cd07960  Anticodon_Ia_Ile_BEm

ProteinModelPortal

H9JXC5   H9JX79   A0A194QLC3   A0A194QH27   A0A2W1BMB0   H9JXC6   + More
A0A0N1IBS6   A0A3G1T1E9   A0A2A4J905   A0A2W1BC39   A0A2A4IWH6   A0A3S2N597   A0A2H1VC49   A0A194QFH9   A0A2A4IZ96   A0A194QFC2   H9JXC4   A0A2H1WZM4   A0A2W1BJB1   A0A2H1WLB6   A0A2W1BEU6   A0A2H1W6N8   H9JXC2   A0A0N1I6T9   H9JX80   A0A2H1WLJ0   G9F9G9   A0A194R3H3   A0A194PPG4   A0A3S2PE71   A0A194R3H6   H9JXC7   G9F9I3   A0A2H1VX30   A0A194PMG8   A0A2A4JPS5   A0A212FF90   A0A212FF93   A0A194PMT8   A0A212FBG8   A0A3S2NZ50   A0A1Y9GKT0   Q5TQY8   A0A194PNS3   A0A2A4JPI4   A0A2W1BWF3   A0A2A4IYR0   A0A194R8P7   A0A212FKW0   A0A1Y1K666   A0A194PPG9   H9JLY4   A0A2A4IZI1   B0WNN7   A0A194RQF8   A0A1Y1KBI8   A0A194R4S7   A0A2H1VF65   D0VYR9   A0A182U0B4   A0A1Y9IRY8   A0A194R365   A0A194PMT2   A0A194PJU3   A0A194R400   A0A1Y1K6D9   G9F9G4   A0A212EPH6   A0A212FIL5   A0A2H1V873   D0VYS0   A0A195EE04   A0A182T2U8   A0A2A4JPN8   H9JLY5   A0A1Y9IW73   D0VYS1   A0A1L8DQN1   A0A194R360   A0A182YP84   A0A2W1BD53   D0VYR8   D6X3T6   H9JMQ9   D6WPV3   J3JYA4   A0A194PRE4   A0A1S4G3W5   A0A212F3B1   A0A2A4JEG9   A0A026WLX1   A0A034VAL4   A0A194PU18   A0A182JGM2   D0VYR6   Q16WF2   A0A182LL23   D0VYR5   A0A034VEY7  

PDB

5CG0     E-value=3.79869e-83,     Score=785

KEGG

101741105    no KO assigned | (RefSeq) myrosinase 1-like

GO

GO:0004553   GO:0005975   GO:0016021   GO:0008152   GO:0016798   GO:0002161   GO:0006428   GO:0004822   GO:0005524   GO:0008422   GO:0000049   GO:0102483   GO:0005737   GO:0004812  

PANTHER

PTHR10353  

SignalP

Position:   1 - 18,         Likelihood:  0.916094

 

 

Length:

378

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15098

Exp number, first 60 AAs:

0.05824

Total prob of N-in:

0.02168

outside

1  -  378

 

 

Pi

251.236267

Theta

154.555248

Tajima's D

2.820064

CLR

0.292617

CSRT

0.969851507424629

Interpretation

Uncertain