Gene

KWMTBOMO12227

Pre Gene Modal

BGIBMGA014187

Annotation

Myrosinase_1_[Papilio_xuthus]

Location

Bomo_Chr20(+):10067509-10082631      View in EpiBrowser

Location in the cell

Lysosomal   Reliability : 1.234

CDS

ATGATGTTGTTATTCTTGTTGGCTGTATACAGTCCATTGGTCTACGCAAATGCCCCAGTTAGAAGACCGCTGGAGAAGACATTTCCTCTGAACTTTAAGTTTGGAGCGGGTTCGTCGTCGTATCAGATCGAGGGCGCATGGAATGTCAGTGATAAAGGTGAGAGCATACAGGATCGCTATGCTCATGAACATCCAGAGAAAGTGGTTGACGGCAGCAATGGTGACGTCGCCTGCGACTCCTACAACCTTTGGAGGAGGGACATCGAAATGGCCACTGAATTGGGATTGGATCATTATCGATTCTCCATTTCATGGCCCCGTCTTCTGCCAAGCGGCTACCCGAATTACATCAGTGAAGACGGCAGGAACTACTATAATAATTTGATAGACGGCCTCCTAAAGAATAATATCGAACCTGTAATTACAATCTATCATTATGAACTTCCTCAAGTATTCCAGGATCTCGGAGGCTGGACCAATCCCCTCATAGTCGACTGGTTTGCTGACTACGCGAGCGTCGTGTACTCTTTATTCGCCGACCGTGTCAAGATCTGGTTGACGGTGAACGAGCCACTTATCATCTGTGACGTCAGCTACATCGGTATCTCAGCGCCGGGCCTATACAGCCCTGACCATGGACTATTCTTGTGTAATAAACACGTTCTCTTGGCACATGCTAAAGCTTGGAGACTATATGATGAGGAGTACAAACCTAAATATCATGGTATGGTGTCACTAACCCAGCTTTTCTTTTGGTTTGAACCGGAAACAGAAGCAGACAGTGAACTAGCAGAGTTGACTAACGAGTATTGTGAGGGTCGTTTCGCTTACCCCATATACTCAAAGGAAGGGGGGTGGCCGCCAGCCTTGAAGAACATCCTGGATGAGAACAGTTACAATAAAGGCTTCAATAACACCAGGGTTCTGCAATTCACACCCGAAGAAATCGAATTCGTCAAAGGTACATACGACTTTTACGCTTTGAACCACTACACATCTTTTGTGGTTAAAGCAATCGAGCCTAACGAAGCTGCTGGCGACTGGCCTTTCTCAGGTTCAAGCGAGTTAGGTGTGAACTTTGGACCACATCCAACATGGGAGGTTTCTGCTGGGTTTGGGATTTACCCACCAGGCTTGCGTAGACAACTGAATTGGCTCAAGAATCGGTATGGTGACATCCCGTTCATGATCACGGAAACTGGATACGCTAGCTACCCATTTCACGGGCTTAATGATGATGGGAGAATAAACTTTATTAAGGACTATCTTAATGAGGTTCTGTTGGCAATTTACGAAGATAAGATAAATGTCACCGGCTACACGGTTTGGAGTCTGATGGATAGTTATGAATGGGAGTCTGGGTACACGGCTAAATACGGACTATACCAAGTTGATTTTGAGTCGCCAAACAAGACTCGAACTCCGAGAAAATCTGCAAAATATTACGCCGACCTGATAAAGAATCGTGCTCTATTGTAA

Protein

MMLLFLLAVYSPLVYANAPVRRPLEKTFPLNFKFGAGSSSYQIEGAWNVSDKGESIQDRYAHEHPEKVVDGSNGDVACDSYNLWRRDIEMATELGLDHYRFSISWPRLLPSGYPNYISEDGRNYYNNLIDGLLKNNIEPVITIYHYELPQVFQDLGGWTNPLIVDWFADYASVVYSLFADRVKIWLTVNEPLIICDVSYIGISAPGLYSPDHGLFLCNKHVLLAHAKAWRLYDEEYKPKYHGMVSLTQLFFWFEPETEADSELAELTNEYCEGRFAYPIYSKEGGWPPALKNILDENSYNKGFNNTRVLQFTPEEIEFVKGTYDFYALNHYTSFVVKAIEPNEAAGDWPFSGSSELGVNFGPHPTWEVSAGFGIYPPGLRRQLNWLKNRYGDIPFMITETGYASYPFHGLNDDGRINFIKDYLNEVLLAIYEDKINVTGYTVWSLMDSYEWESGYTAKYGLYQVDFESPNKTRTPRKSAKYYADLIKNRALL

Similarity

Belongs to the glycosyl hydrolase 1 family.
Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

A0A2W1BMB0   A0A2A4IZ96   A0A3G1T1E9   A0A2A4J905   A0A194QH27   A0A2A4IWH6   + More
A0A2H1VC49   A0A2W1BEU6   A0A3S2N597   A0A2W1BC39   A0A2H1W6N8   A0A194QFC2   H9JX79   A0A2W1BJB1   A0A194QFH9   H9JXC5   A0A2H1WLJ0   A0A2H1WLB6   H9JX80   H9JXC7   H9JXC6   A0A0N1I6T9   D6X3T6   A0A2H1VX30   A0A194PMT2   A0A2H1VF65   Q5TQY8   B0WNN7   A0A1Y9GKT0   A0A194R3H3   G9F9G9   A0A1Y9IRY8   A0A2A4JPS5   A0A3S2PE71   A0A182U0B4   A0A194PPG4   A0A194R360   H9IZH5   A0A2W1BWF3   H9JX83   A0A194PVV9   G9F9I3   A0A182QI13   A0A2H1VWC6   H9JLY4   A0A182YP84   A0A2H1WY61   A0A194PNS3   A0A194QLC3   Q16WF2   G9F9I0   A0A182LL23   A0A1S4G3W5   A0A194R738   A0A212EKQ3   Q16ET6   A0A1Q3FR87   A0A194R400   A0A2A4JTU1   A0A194R8P7   A0A084VCJ7   A0A182J2M6   A0A2J7Q526   A0A1L8DQN1   A0A1Y9IW73   A0A212FF93   H9JLY5   Q8T0W7   H9J8E3   A0A182HAK7   A0A212FF90   A0A194R3H6   G9F9I2   A0A2W1BND7   A0A0K2YR16   A0A0N1IBS6   A0A194PPG9   A0A3S2TR57   A0A1Y9J100   W5JN46   A0A2M3ZET6   A0A1A9W4X6   A0A067RNA8   A0A1B6DTT1   A0A194PU18   A0A2H1WB70   A0A1S5SJI5   A0A1Y9IW90   A0A0B5EM11   A0A1B6D232   A0A2J7PTK4   A0A194PMT8   V5GZG1   A0A2M4BKN2   A0A1L8DR18   A0A1L8DQS5   A0A194PP18   A0A2J7PKH2   A0A212F3C5  

Pubmed

28756777    26354079    19121390    18362917    19820115    12364791    + More
14747013    17210077    25244985    17510324    20966253    22118469    24438588    12429120    20682343    22751668    26483478    26940001    20920257    23761445    24845553    25596091   

EMBL

KZ150152    PZC72823.1    NWSH01004417    PCG65145.1    MG992371    AXY94809.1    + More
NWSH01002416    PCG68339.1    KQ459053    KPJ04240.1    NWSH01005512    PCG64155.1    ODYU01001752    SOQ38385.1    PZC72831.1    RSAL01000405    RVE41892.1    PZC72822.1    ODYU01006661    SOQ48703.1    KPJ04243.1    BABH01035825    PZC72820.1    KPJ04242.1    BABH01035826    BABH01035827    ODYU01009444    SOQ53877.1    SOQ53875.1    BABH01035816    BABH01035817    BABH01035838    BABH01035839    BABH01035833    BABH01035834    BABH01035835    KQ461157    KPJ08090.1    KQ971326    EEZ97373.2    ODYU01004975    SOQ45390.1    KQ459598    KPI94627.1    ODYU01001971    SOQ38904.1    AAAB01008960    EAL40075.2    DS232013    EDS31873.1    APCN01002262    KQ460779    KPJ12242.1    JN033714    AEW46867.1    NWSH01000819    PCG74065.1    RSAL01000077    RVE48784.1    KPI94624.1    KPJ12243.1    BABH01014157    KZ149936    PZC77130.1    BABH01035811    BABH01035812    KQ459589    KPI97521.1    JN033728    AEW46881.1    AXCN02000455    ODYU01004836    SOQ45125.1    BABH01005437    ODYU01011923    SOQ57942.1    KPI94633.1    KPJ04241.1    CH477568    EAT38910.1    JN033725    AEW46878.1    KQ460870    KPJ11681.1    AGBW02014221    OWR42063.1    CH478582    EAT32750.1    GFDL01004884    JAV30161.1    KPJ12249.1    NWSH01000598    PCG75431.1    KPJ12246.1    ATLV01010792    KE524614    KFB35691.1    NEVH01018372    PNF23676.1    GFDF01005306    JAV08778.1    AGBW02008847    OWR52397.1    BABH01005438    AB073638    BAB91145.1    BABH01027307    JXUM01031352    KQ560919    KXJ80348.1    OWR52398.1    KPJ12247.1    JN033727    AEW46880.1    KZ150027    PZC74787.1    LN851681    CRL08768.1    KPJ08092.1    KPI94629.1    RSAL01000018    RVE52880.1    ADMH02000892    ETN64738.1    GGFM01006254    MBW27005.1    KK852405    KDR24533.1    GEDC01008218    JAS29080.1    KPI94630.1    ODYU01007492    SOQ50308.1    KU170546    APM84101.1    KP068699    AJE75670.1    GEDC01024268    GEDC01017592    JAS13030.1    JAS19706.1    NEVH01021237    PNF19655.1    KPI94632.1    GALX01002583    JAB65883.1    GGFJ01004382    MBW53523.1    GFDF01005304    JAV08780.1    GFDF01005305    JAV08779.1    KQ459597    KPI95176.1    NEVH01024540    PNF16837.1    AGBW02010585    OWR48224.1   

Proteomes

UP000218220    UP000053268    UP000283053    UP000005204    UP000053240    UP000007266    + More
UP000007062    UP000002320    UP000075840    UP000075903    UP000075902    UP000075886    UP000076408    UP000008820    UP000075882    UP000007151    UP000030765    UP000075880    UP000235965    UP000075920    UP000069940    UP000249989    UP000076407    UP000000673    UP000091820    UP000027135   

PRIDE

H9JX79    H9JXC5    H9JX80    H9JXC7    H9JXC6    H9IZH5    + More
H9JX83    H9JLY4    H9JLY5    H9J8E3   

Pfam

PF00232   Glyco_hydro_1        + More
PF00501   AMP-binding
PF13193   AMP-binding_C
PF00133   tRNA-synt_1

Interpro

IPR001360   Glyco_hydro_1        + More
IPR017853   Glycoside_hydrolase_SF       
IPR033132   Glyco_hydro_1_N_CS       
IPR018120   Glyco_hydro_1_AS       
IPR000873   AMP-dep_Synth/Lig       
IPR025110   AMP-bd_C       
IPR002300   aa-tRNA-synth_Ia       
IPR014729   Rossmann-like_a/b/a_fold       
IPR001412   aa-tRNA-synth_I_CS       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002301   Ile-tRNA-ligase       

SUPFAM

SSF51445   SSF51445        + More
SSF50677   SSF50677       

Gene 3D

3.40.50.620     3.90.740.10    

ProteinModelPortal

A0A2W1BMB0   A0A2A4IZ96   A0A3G1T1E9   A0A2A4J905   A0A194QH27   A0A2A4IWH6   + More
A0A2H1VC49   A0A2W1BEU6   A0A3S2N597   A0A2W1BC39   A0A2H1W6N8   A0A194QFC2   H9JX79   A0A2W1BJB1   A0A194QFH9   H9JXC5   A0A2H1WLJ0   A0A2H1WLB6   H9JX80   H9JXC7   H9JXC6   A0A0N1I6T9   D6X3T6   A0A2H1VX30   A0A194PMT2   A0A2H1VF65   Q5TQY8   B0WNN7   A0A1Y9GKT0   A0A194R3H3   G9F9G9   A0A1Y9IRY8   A0A2A4JPS5   A0A3S2PE71   A0A182U0B4   A0A194PPG4   A0A194R360   H9IZH5   A0A2W1BWF3   H9JX83   A0A194PVV9   G9F9I3   A0A182QI13   A0A2H1VWC6   H9JLY4   A0A182YP84   A0A2H1WY61   A0A194PNS3   A0A194QLC3   Q16WF2   G9F9I0   A0A182LL23   A0A1S4G3W5   A0A194R738   A0A212EKQ3   Q16ET6   A0A1Q3FR87   A0A194R400   A0A2A4JTU1   A0A194R8P7   A0A084VCJ7   A0A182J2M6   A0A2J7Q526   A0A1L8DQN1   A0A1Y9IW73   A0A212FF93   H9JLY5   Q8T0W7   H9J8E3   A0A182HAK7   A0A212FF90   A0A194R3H6   G9F9I2   A0A2W1BND7   A0A0K2YR16   A0A0N1IBS6   A0A194PPG9   A0A3S2TR57   A0A1Y9J100   W5JN46   A0A2M3ZET6   A0A1A9W4X6   A0A067RNA8   A0A1B6DTT1   A0A194PU18   A0A2H1WB70   A0A1S5SJI5   A0A1Y9IW90   A0A0B5EM11   A0A1B6D232   A0A2J7PTK4   A0A194PMT8   V5GZG1   A0A2M4BKN2   A0A1L8DR18   A0A1L8DQS5   A0A194PP18   A0A2J7PKH2   A0A212F3C5  

PDB

3VII     E-value=4.9226e-114,     Score=1052

KEGG

101737249    no KO assigned | (RefSeq) myrosinase 1-like

GO

GO:0005975   GO:0004553   GO:0016021   GO:0008422   GO:0002161   GO:0006428   GO:0004822   GO:0005524   GO:0008152   GO:0016798   GO:0102483   GO:0005737   GO:0004812   GO:0000049  

PANTHER

PTHR10353  

SignalP

Position:   1 - 16,         Likelihood:  0.981614

 

 

Length:

492

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.27773

Exp number, first 60 AAs:

0.25568

Total prob of N-in:

0.01360

outside

1  -  492

 

 

Pi

231.349632

Theta

151.480734

Tajima's D

1.858654

CLR

0.064665

CSRT

0.860806959652017

Interpretation

Uncertain