Gene

KWMTBOMO12226

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr20(+):10058889-10061165      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.558

CDS

ATGTGGATGAATCTGGAAAGTAAAATAAATGATGCCCTTGTAGATGTTACCTCTCAAAGAGAAAAAGATCCCAGGAGATCCACATGGATAACAGACCAAACATGGAGCCTAATCCAGCGCAGAAAAGATGTCAAAGTCAGAGGCCTACAGAATCCTGAGATACGTAGGGAATACTCTGAGATTTGTAAAGCAGTCCAAAGAGAATGCCGCAGAGACAAAAATAAATTTATTATGGGCATATGTCGAGAGGTGGAATCACACGCGCTAAAGCTGCAAACTTCAGATCTGTTCAAGAAAGTCCGTCTGCTAAGTAGAAAATTCAAGCCCAAATCTTGGGTCATAGAAAACTCTGAAGGACTACCACTGCATGAACTGCACGAAATCACGGAACGCTGGCGTGGCTACTGTGAGCAACTCTATAAAGCTCCCCATGAATCTACCGAAAGCCGGTTCGACTGGAAAGATCTTGAATTGGAGCCTAATATTCTGAGATCAGAGGTAACGGGTGCAATCGACCGGCTCAAATCAAAGAAGGCTCCCGGACCTGACGATATCACATCGGAGATCCTCAAGGCTCTTGGTGACAATGGTTTGGATGTACTCCATAAGATTTGCAATCACGTATGGCAAAACGGTGAATGGCCCAAAAACTGGACGCGGTCTATAATTATCCCACTGCACAAGAAAGGTTCAACTAGAAAATGTGATAATTACCGCACCCTGGCCCTCATCTCTCACGCTAGCAAAGTTCTTTTGCATGTAATAAACAGCAGGATTCGTTACTATTTGGACTGGCAGATCCCGCAGGAACAAGCTGGATTTGTAAAAGGCAAGGGCACGAGGGAGCAAATACTGAACGTGAGACAGATTGTGGAAAAGTGCTACGAATTCGACACGCCGGTCATCATGTGTTTCGTTGACTATAGTAAGGCTTTTGACTGTGTTGACTGGAACTGCTTGTGGGATGTCCTCACAGAGTTGGGGGTCCCTCGCCACCTTACTGCACTCCTTCAGTCATTATACTACAACAGCCAGGGAGTAGTGAGAATCGATAGGACTGCATCTGACTCGTTCAAATTTCACAAGGGCGTGCGGCAGGGCTGCATCCTATCACCCATCCTGTTCAATATTTACGGCGAATACATCGTCAGAAAAACATGCGATGGATGGGATGGTGGTATTACCGTCGGAGGCTGTAAAATCTCTAACTTACGCTACGCTGACGACACCACTCTCCTGGCAGCCAGCGAAATCGAGATGAGCAAGTTCTTGGACAGGATGGAGCGCATTAGCAAAGACCTCGGACTCGTGATAAACAGATCTAAAACAAAGGTCATGATCGTTGATCGCACAGGCAGACTGGAGCTCAGCGGTACACTTAATTTAGAAGTAACGGACAACTTTGTTTACCTGGGCTCCAACATCAGCAACAATGGCTCTTGTGAACCGGAAATTCGTAGACGGATTGGGATGGCAAAAGGTGCCATGTCTCAGCTGGACAAAATATGGAAGGACAAAAATATCTCTATGAACACCAAGAGCAACCTAGTCCGCACACTAGTGTTTTCAATATTCATATACGGAGCAGAGACATGGACTATAAAGAAAGCTGACCGCAATCGGATTGATGCCTTCGAAATGTGGTGCTGGAGGAGGATGTTGGGTATTCCCTGGACCGCACGCCGCACCAATTTATCCATCCTAGCTCAGTTGAAGATCCGGACTAGACTCTCCACCATTTGCATGCGAAGGATTCTTGAATACTTTGGCCACATCGCAAGGAAAGACAGTGACAACTTAGAGAAATTGATGGTCACTGGAAAGGTCGAGGGCAAGCGACTAAGAGGCAGGAACCCGACCCGCTGGACGGACCAGATTCGTGCAGCCCTGGATACCACAGTGCACGATGCTCTGCAATCAGCTGCAGATAGGAACAGATGGCGATGCACTATAAAAAACAATCTGTTTCAAGGCCATGACCACGACCCTCAGTAA

Protein

MWMNLESKINDALVDVTSQREKDPRRSTWITDQTWSLIQRRKDVKVRGLQNPEIRREYSEICKAVQRECRRDKNKFIMGICREVESHALKLQTSDLFKKVRLLSRKFKPKSWVIENSEGLPLHELHEITERWRGYCEQLYKAPHESTESRFDWKDLELEPNILRSEVTGAIDRLKSKKAPGPDDITSEILKALGDNGLDVLHKICNHVWQNGEWPKNWTRSIIIPLHKKGSTRKCDNYRTLALISHASKVLLHVINSRIRYYLDWQIPQEQAGFVKGKGTREQILNVRQIVEKCYEFDTPVIMCFVDYSKAFDCVDWNCLWDVLTELGVPRHLTALLQSLYYNSQGVVRIDRTASDSFKFHKGVRQGCILSPILFNIYGEYIVRKTCDGWDGGITVGGCKISNLRYADDTTLLAASEIEMSKFLDRMERISKDLGLVINRSKTKVMIVDRTGRLELSGTLNLEVTDNFVYLGSNISNNGSCEPEIRRRIGMAKGAMSQLDKIWKDKNISMNTKSNLVRTLVFSIFIYGAETWTIKKADRNRIDAFEMWCWRRMLGIPWTARRTNLSILAQLKIRTRLSTICMRRILEYFGHIARKDSDNLEKLMVTGKVEGKRLRGRNPTRWTDQIRAALDTTVHDALQSAADRNRWRCTIKNNLFQGHDHDPQ

Uniprot

D7F163   D7F168   D7F172   D7F161   D7F162   D5LB39   + More
D7F175   D7F167   A0A2W1BNH4   A0A2W1BGD9   A0A2H6KKM9   A0A3Q1LQN1   A0A3Q1MLZ9   A0A3Q1MJK8   A0A3Q1M6J7   A0A3S3P648   A0A3Q1MGH6   A0A3Q1MQ02   A0A3Q1N3Y9   A0A3Q1LXQ5   A0A3Q1MMW6   A0A3Q1M1T7   A0A3Q1MP18   A0A3Q1LUA6   A0A3Q1MI63   A0A3Q1LI58   A0A3Q1LWU3   A0A3Q1M527   A0A3Q1LNZ2   A0A3Q1LR18   A0A3Q1M8D1   A0A3Q1N2X2   H3B2Y3   A0A3Q1LXF5   A0A3Q1MWB3   A0A3Q1MNB9   A0A3Q1NE48   A0A3Q1N1P1   A0A3Q1MDY8   A0A3Q1LYT3   A0A3Q1MA23   A0A3Q1MLV4   A0A3Q1MLI2   A0A3Q1ML42   A0A3Q1MZJ0   A0A3Q1LRD2   A0A3Q1LWH0   A0A3Q1MM54   A0A3Q1M0W5   A0A3Q1MXT5   A0A3Q1LR52   A0A3Q1LX64   A0A0J7KGF7   F6RFH2   H2YWZ5   A0A3Q1LIW6   A0A3Q1MKR5   A0A3Q1MGI7   A0A3Q1M8I7   A0A3Q1NFT8   A0A3Q1MEQ0   A0A3Q1NI39   A0A3Q1N0X3   A0A3Q1M6V6   A0A3Q1MLF3   A0A3Q1M4W4   A0A3Q1N0I8   A0A3Q1LWK2   W5N9W4  

Pubmed

20470440    28756777    29078748    19393038    9215903   

EMBL

FJ265548    ADI61816.1    FJ265553    ADI61821.1    FJ265557    ADI61825.1    + More
FJ265546    ADI61814.1    FJ265547    ADI61815.1    GU815090    ADF18553.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    KZ150025    PZC74827.1    KZ150203    PZC72267.1    BDSA01000081    GBE63537.1    NCKU01004395    RWS06003.1    AFYH01119920    LBMM01007694    KMQ89503.1    AHAT01022314   

Proteomes

UP000009136    UP000285301    UP000008672    UP000036403    UP000007875    UP000018468    + More

PRIDE

D7F163    D7F168    D7F172    D7F161    D7F162    D5LB39    + More
D7F175    D7F167   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   D7F168   D7F172   D7F161   D7F162   D5LB39   + More
D7F175   D7F167   A0A2W1BNH4   A0A2W1BGD9   A0A2H6KKM9   A0A3Q1LQN1   A0A3Q1MLZ9   A0A3Q1MJK8   A0A3Q1M6J7   A0A3S3P648   A0A3Q1MGH6   A0A3Q1MQ02   A0A3Q1N3Y9   A0A3Q1LXQ5   A0A3Q1MMW6   A0A3Q1M1T7   A0A3Q1MP18   A0A3Q1LUA6   A0A3Q1MI63   A0A3Q1LI58   A0A3Q1LWU3   A0A3Q1M527   A0A3Q1LNZ2   A0A3Q1LR18   A0A3Q1M8D1   A0A3Q1N2X2   H3B2Y3   A0A3Q1LXF5   A0A3Q1MWB3   A0A3Q1MNB9   A0A3Q1NE48   A0A3Q1N1P1   A0A3Q1MDY8   A0A3Q1LYT3   A0A3Q1MA23   A0A3Q1MLV4   A0A3Q1MLI2   A0A3Q1ML42   A0A3Q1MZJ0   A0A3Q1LRD2   A0A3Q1LWH0   A0A3Q1MM54   A0A3Q1M0W5   A0A3Q1MXT5   A0A3Q1LR52   A0A3Q1LX64   A0A0J7KGF7   F6RFH2   H2YWZ5   A0A3Q1LIW6   A0A3Q1MKR5   A0A3Q1MGI7   A0A3Q1M8I7   A0A3Q1NFT8   A0A3Q1MEQ0   A0A3Q1NI39   A0A3Q1N0X3   A0A3Q1M6V6   A0A3Q1MLF3   A0A3Q1M4W4   A0A3Q1N0I8   A0A3Q1LWK2   W5N9W4  

PDB

5HHL     E-value=0.0141258,     Score=92

KEGG

105841557    no KO assigned | (RefSeq) uncharacterized LOC105841557

GO

GO:0003964   GO:0004519   GO:0004197  

Length:

664

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.22052

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00233

outside

1  -  664

 

 

Pi

213.404976

Theta

56.146862

Tajima's D

1.636366

CLR

0.016504

CSRT

0.822908854557272

Interpretation

Uncertain