SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12226
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.558
 

Sequence

CDS
ATGTGGATGAATCTGGAAAGTAAAATAAATGATGCCCTTGTAGATGTTACCTCTCAAAGAGAAAAAGATCCCAGGAGATCCACATGGATAACAGACCAAACATGGAGCCTAATCCAGCGCAGAAAAGATGTCAAAGTCAGAGGCCTACAGAATCCTGAGATACGTAGGGAATACTCTGAGATTTGTAAAGCAGTCCAAAGAGAATGCCGCAGAGACAAAAATAAATTTATTATGGGCATATGTCGAGAGGTGGAATCACACGCGCTAAAGCTGCAAACTTCAGATCTGTTCAAGAAAGTCCGTCTGCTAAGTAGAAAATTCAAGCCCAAATCTTGGGTCATAGAAAACTCTGAAGGACTACCACTGCATGAACTGCACGAAATCACGGAACGCTGGCGTGGCTACTGTGAGCAACTCTATAAAGCTCCCCATGAATCTACCGAAAGCCGGTTCGACTGGAAAGATCTTGAATTGGAGCCTAATATTCTGAGATCAGAGGTAACGGGTGCAATCGACCGGCTCAAATCAAAGAAGGCTCCCGGACCTGACGATATCACATCGGAGATCCTCAAGGCTCTTGGTGACAATGGTTTGGATGTACTCCATAAGATTTGCAATCACGTATGGCAAAACGGTGAATGGCCCAAAAACTGGACGCGGTCTATAATTATCCCACTGCACAAGAAAGGTTCAACTAGAAAATGTGATAATTACCGCACCCTGGCCCTCATCTCTCACGCTAGCAAAGTTCTTTTGCATGTAATAAACAGCAGGATTCGTTACTATTTGGACTGGCAGATCCCGCAGGAACAAGCTGGATTTGTAAAAGGCAAGGGCACGAGGGAGCAAATACTGAACGTGAGACAGATTGTGGAAAAGTGCTACGAATTCGACACGCCGGTCATCATGTGTTTCGTTGACTATAGTAAGGCTTTTGACTGTGTTGACTGGAACTGCTTGTGGGATGTCCTCACAGAGTTGGGGGTCCCTCGCCACCTTACTGCACTCCTTCAGTCATTATACTACAACAGCCAGGGAGTAGTGAGAATCGATAGGACTGCATCTGACTCGTTCAAATTTCACAAGGGCGTGCGGCAGGGCTGCATCCTATCACCCATCCTGTTCAATATTTACGGCGAATACATCGTCAGAAAAACATGCGATGGATGGGATGGTGGTATTACCGTCGGAGGCTGTAAAATCTCTAACTTACGCTACGCTGACGACACCACTCTCCTGGCAGCCAGCGAAATCGAGATGAGCAAGTTCTTGGACAGGATGGAGCGCATTAGCAAAGACCTCGGACTCGTGATAAACAGATCTAAAACAAAGGTCATGATCGTTGATCGCACAGGCAGACTGGAGCTCAGCGGTACACTTAATTTAGAAGTAACGGACAACTTTGTTTACCTGGGCTCCAACATCAGCAACAATGGCTCTTGTGAACCGGAAATTCGTAGACGGATTGGGATGGCAAAAGGTGCCATGTCTCAGCTGGACAAAATATGGAAGGACAAAAATATCTCTATGAACACCAAGAGCAACCTAGTCCGCACACTAGTGTTTTCAATATTCATATACGGAGCAGAGACATGGACTATAAAGAAAGCTGACCGCAATCGGATTGATGCCTTCGAAATGTGGTGCTGGAGGAGGATGTTGGGTATTCCCTGGACCGCACGCCGCACCAATTTATCCATCCTAGCTCAGTTGAAGATCCGGACTAGACTCTCCACCATTTGCATGCGAAGGATTCTTGAATACTTTGGCCACATCGCAAGGAAAGACAGTGACAACTTAGAGAAATTGATGGTCACTGGAAAGGTCGAGGGCAAGCGACTAAGAGGCAGGAACCCGACCCGCTGGACGGACCAGATTCGTGCAGCCCTGGATACCACAGTGCACGATGCTCTGCAATCAGCTGCAGATAGGAACAGATGGCGATGCACTATAAAAAACAATCTGTTTCAAGGCCATGACCACGACCCTCAGTAA
Protein
MWMNLESKINDALVDVTSQREKDPRRSTWITDQTWSLIQRRKDVKVRGLQNPEIRREYSEICKAVQRECRRDKNKFIMGICREVESHALKLQTSDLFKKVRLLSRKFKPKSWVIENSEGLPLHELHEITERWRGYCEQLYKAPHESTESRFDWKDLELEPNILRSEVTGAIDRLKSKKAPGPDDITSEILKALGDNGLDVLHKICNHVWQNGEWPKNWTRSIIIPLHKKGSTRKCDNYRTLALISHASKVLLHVINSRIRYYLDWQIPQEQAGFVKGKGTREQILNVRQIVEKCYEFDTPVIMCFVDYSKAFDCVDWNCLWDVLTELGVPRHLTALLQSLYYNSQGVVRIDRTASDSFKFHKGVRQGCILSPILFNIYGEYIVRKTCDGWDGGITVGGCKISNLRYADDTTLLAASEIEMSKFLDRMERISKDLGLVINRSKTKVMIVDRTGRLELSGTLNLEVTDNFVYLGSNISNNGSCEPEIRRRIGMAKGAMSQLDKIWKDKNISMNTKSNLVRTLVFSIFIYGAETWTIKKADRNRIDAFEMWCWRRMLGIPWTARRTNLSILAQLKIRTRLSTICMRRILEYFGHIARKDSDNLEKLMVTGKVEGKRLRGRNPTRWTDQIRAALDTTVHDALQSAADRNRWRCTIKNNLFQGHDHDPQ

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
SUPFAM
SSF56219   SSF56219       
Gene 3D
PDB
5HHL     E-value=0.0141258,     Score=92

Ontologies

Topology

Length:
664
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.22052
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00233
outside
1  -  664
 
 

Population Genetic Test Statistics

Pi
213.404976
Theta
56.146862
Tajima's D
1.636366
CLR
0.016504
CSRT
0.822908854557272
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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