Gene

KWMTBOMO12222  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014150

Annotation

PREDICTED:_isoleucine--tRNA_ligase?_mitochondrial_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr20(-):9952657-9981698      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.708 Nuclear   Reliability : 1.262

CDS

ATGGATCTCACTAATGGAGACGTGACCTGCGACTCTTATCATCTTTGGGAGAGAGACATAGAAATGGCAACGGAGCTTGGTCTACATTTCTACCGCTTCTCTCTGTCTTGGCCAAGGCTTATGCCTACGGGTTTTAGTAATAAGATCAGCGAAGACGGCCAGAAGTACTACAACAACCTGATTGATGGGCTTTTGGATAAGGGGATTGAACCTCTTGTTACCATTTTTCATTGGGATTTACCCCAGAGTTTGCAGGATCTTGGTGGCTGGATGAATCCGCTGATAGTCGACTGGTTTGAGGACTACGCTAGGGTCGTGTTCTCTCTGTTCGCGGATAGAGTTAAAACCTGGGTCTCTATAAACGAGCCTGTATCGATTTGCGACTATGTTTATAACACTGGCGGAATGGCTCCTCCTATTTTCGAGCCTCACGTGGCCCCTTATGTGTGTACTAAGCATGTTTTGCTGGCTCACGCCAAAGCTTGGAGGATTTATGACGAGGAATTCAGGCCAATGTATAACGGTGAAATCTCGTTGGCCATTCCCCTGATCTGGCACGAAGCATTATCTGCTGAGCATGAAGAACTTGCTGAATTGCTAAGAGAAAATATAGCCGGTCGGTATAGTCACCCAGTCTACTCAAAGGAGGGAGGTTGGCCACCGTCTCTGGAGAAGCATCTGGAAGAGGTCGGCAAACGCAAGGGATTCAACAAATCGGTCCTCCCGCCTTTCACGAAAGAGGAAATAGATTTGATTAGAGGTACATACGACTACTACGGAATGAATTTCTACACGAGTCGTCTGGTGCGGAAGGCGAGGCCCGGCGAATCTATCGGAGCCTGGCCAATGAACGGAGCCCCTGATTTTGACGCAGCCTTCGAGAAAGATCCAAGCTGGGTCGCCGGCTATTCTAGCTGGTTCTATGTAACCCCTGAATATTTCCGACCTCAAATTATGTGGTTGAAAGAAAAATACGGGGACCTGAAGTTCTTGATCACTGAAAACGGTATTTCGACTGGACCAGGATTGGATGACAGAATGAGGGTCGAGTATTATAGGGATCATTTAAAAGAGTTACTTCTAGCCATCCACGAGGACGGCGTTAACGTGGTGGGATTCACAGCGTGGACCCTGATGGACAACTTCGAGTGGAACGATGGTCTCGGATCCAAATTCGGATTATACGAAGTGAACTTCACCTCTCCGCAGCGCACGCGGACGCCACTGACAAAACGACGGAATTATGGGATATTGCTTACAAAATGGGATTGCAAAAGCTGCGTACGCTTAAAAAGTTCAGCAGAACCAAAAACCAAGACCTATTCTCATACGGTATTGACTCCTAAAACAAAATTTCCTGTGCGTTCGACTGCCGTAGTAAAAGATGAAATTCAAAAGAGTGCACAATTTTCGGAATTATATTCATGGCAGAGGGAAAACTTGAAAGGATCCGAATTTGTGTTACATGACGGGCCGCCTTACGCTAATGGTGATTTACATATGGGACATGCTGTGAACAAGATAATTAAAGATATAAATAATCGCAGTCAGATATTACAAGGAAACAAGGTACATTATACGCCGGGTTGGGACTGTCATGGACTTCCGATAGAACTTAAAGCATTACAAAAATCCAAAAAATCATCAACCGGTACTGATCCTATTGCCATACGTACTACAGCAAGGAGCTTTGCCCTAGAAACCGTTGAAAAACAAAAGCAAGCATTTATTAGTTGGGGTATCATGGCCGACTGGGAGAATCACAGTTATTTAACTCTAAAAAATAATTATGTCAAGAATCAATTGCATTTGTTTCATAAAATGTATGAGAAGGGCTATATATATCGTGCATTAAAGCCAGTTTATTGGAGCCCTTCCTCTAGAACAGCTCTAGCGGAAGCGGAACTGGAATACGATCCGCAGTATCGAAGCACAGAAGTGTATGTCACGTTTCCCATAGAGAAGGCACCTGGTTGTGTCAGTGACTATGTGAACGGTATGCCTTTATCTGCAATTATTTGGACGACGACGCCTTGGACCCTGCCCGCCAATCGAGCGATCTGCTACAACCCTCAAATGATGTACAGCATCGTGAAGCTGTCGAACCGACCTGGACAATTCTTAGTGGCCACCAGCCTTATTGGCAGCTTGGAACAAATATTAAGTATTGAAATTAAGAAGATCATAGAGTTTGACGGTGCCCAATTAGAAGGCACATCGTATAGGCACGCTCTGGTGAATGAGGTCTTGCCGTTCCTCCCCGGAGACCACGTCACGGCCGGTAAGGGAACGGGCCTGGTGCACACTGCCCCGGCCCACGGACCAGATGACTTCCTCGTGGCGTTGCGGAATAACATGCGTGTCGAATGCAAAGTGGACGAAGCTGGTCGTTACACCAACCTGGATCCTCAACTGGACGGGCTCCACGTCCTAAGTGAAGGACAGGAGGAAGTGGTAAAGCGTCTTGGGTCTTCTGTTATACACCGCGGGGTGTATACCCACTCGTATCCTCTGGACTGGAGGACGAAGAAACCGATCATCATCAGGGCAAGCGAACAGTGGTTCATTGATACGGCGAAACTTAAGGAACCGGCTTTGAGAGCCTTAGATAGCGTAGATATTCTGCCGCCATCCAGCAGCGCTCAATCTCGTCAGGGCTTCAGGGCTCAGTTGGAGAAGAGGCCGTACTGGTGTATATCCAGACAAAGGGCTTGGGGCGTGCCGATTCCGGCTTTGTATGCTGATGGTGACGTCATCGTTGATATTGGTGTCATAGATAAGCTGTGCGCTCTAATAGACAAGGAAGGAACGGATACATGGTGGACTTGTGACGTGAAGAGTCTCCTACCCGACGATCTACTTAAATCATTAAGTGATCGACAAATCGAAAAAGGAAAGGATATAATGGATATATGGCTGGACTCGGGGCTGTCTTGGAGCACCCTGGACGGCAGAACGGCCGACCTATACTGCGAGGGGGTCGACCAGCTCACCGGCTGGTTCCAAGCCTCGCTGCTGACGTCATTGGCCTTGAATGAGAAACCTCCTTATAAATCCATTTTCGTCCACGGCTTCGTTGTCGACGAGAACAAACGTAAGATGTCGAAATCCATTGGTAACGTGATCGATCCAGACGCAATAATCAACGGCAGCAAAGGAAAAAATCAATCGGCCTACGGAGTTGATACCTTGAGATGGTGGGTAGCTAGTCATTCTACGCAGCACTCACACATAATCATAAGCAGGAATCTTCTAGACGACTGTCGATCCGAAGTGATAAGGATACGTAATATTTTAAAGTACTTATTGGGCGTGATAAGTGATTTGGATAAAACCGATTTTTATCGGGAACCGAATCTGAATTACTTCGATGGGTACATGCGGAAGGAAACTGATGAGTTTTTGAAGCGAATCGAGGATCATTACAATAACTATAGGTACAATAATGTGGCCCAAGCGATACTGAATTTCGTTAGCAGCAAAGTGTCCGCATTGTATTGTCATTGCGTCAAAGATAGATTATACTGTGCGCGCAGGGGTTCGGACGAGCGCCTGTCTGCCCAGTTGGTCGTGCACGCGATTCTGGTCTCTCTGTCCAAAGCCATAGCGCCTATATTACCGCACTTAATCGAGGAAGCGTGGCGTTACCATCCTCTGTACGAGAAACCGTTCTTCATGACCCCCGATATACCGGTGCTGCCCGTTAAACCGATAGAAACGCATTTAATGAACTCGATTTTGGAGATAAAACGCGAAATATGCGTTATAACGAAGAACGAAGATCTGAAAAGATTTTGCGCTAATATCAAATTGAGTAATGATTTGTTCGGCGAATTGAATCCCCTGAATCGATCCGATAGTGACAGTGACAGCGTGCTGTGCGAGATTCTAGAACTGTCATCTGTCAAACTTCACCCGTCAAGTGACGTCAGATTGTTCGAAGTTGAACTGTCACAGAGTAGCCGCGATCAGTGTCTAAGGTGTCGAAAGTATACAGCCACCGTAAATAGTGATAAATGTACGAGATGTGAAAACGTTTTGGATTTGCTTTAG

Protein

MDLTNGDVTCDSYHLWERDIEMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLLDKGIEPLVTIFHWDLPQSLQDLGGWMNPLIVDWFEDYARVVFSLFADRVKTWVSINEPVSICDYVYNTGGMAPPIFEPHVAPYVCTKHVLLAHAKAWRIYDEEFRPMYNGEISLAIPLIWHEALSAEHEELAELLRENIAGRYSHPVYSKEGGWPPSLEKHLEEVGKRKGFNKSVLPPFTKEEIDLIRGTYDYYGMNFYTSRLVRKARPGESIGAWPMNGAPDFDAAFEKDPSWVAGYSSWFYVTPEYFRPQIMWLKEKYGDLKFLITENGISTGPGLDDRMRVEYYRDHLKELLLAIHEDGVNVVGFTAWTLMDNFEWNDGLGSKFGLYEVNFTSPQRTRTPLTKRRNYGILLTKWDCKSCVRLKSSAEPKTKTYSHTVLTPKTKFPVRSTAVVKDEIQKSAQFSELYSWQRENLKGSEFVLHDGPPYANGDLHMGHAVNKIIKDINNRSQILQGNKVHYTPGWDCHGLPIELKALQKSKKSSTGTDPIAIRTTARSFALETVEKQKQAFISWGIMADWENHSYLTLKNNYVKNQLHLFHKMYEKGYIYRALKPVYWSPSSRTALAEAELEYDPQYRSTEVYVTFPIEKAPGCVSDYVNGMPLSAIIWTTTPWTLPANRAICYNPQMMYSIVKLSNRPGQFLVATSLIGSLEQILSIEIKKIIEFDGAQLEGTSYRHALVNEVLPFLPGDHVTAGKGTGLVHTAPAHGPDDFLVALRNNMRVECKVDEAGRYTNLDPQLDGLHVLSEGQEEVVKRLGSSVIHRGVYTHSYPLDWRTKKPIIIRASEQWFIDTAKLKEPALRALDSVDILPPSSSAQSRQGFRAQLEKRPYWCISRQRAWGVPIPALYADGDVIVDIGVIDKLCALIDKEGTDTWWTCDVKSLLPDDLLKSLSDRQIEKGKDIMDIWLDSGLSWSTLDGRTADLYCEGVDQLTGWFQASLLTSLALNEKPPYKSIFVHGFVVDENKRKMSKSIGNVIDPDAIINGSKGKNQSAYGVDTLRWWVASHSTQHSHIIISRNLLDDCRSEVIRIRNILKYLLGVISDLDKTDFYREPNLNYFDGYMRKETDEFLKRIEDHYNNYRYNNVAQAILNFVSSKVSALYCHCVKDRLYCARRGSDERLSAQLVVHAILVSLSKAIAPILPHLIEEAWRYHPLYEKPFFMTPDIPVLPVKPIETHLMNSILEIKREICVITKNEDLKRFCANIKLSNDLFGELNPLNRSDSDSDSVLCEILELSSVKLHPSSDVRLFEVELSQSSRDQCLRCRKYTATVNSDKCTRCENVLDLL

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

H9JX85   A0A212F4J2   A0A067QZ22   A0A2J7R594   A0A146LKG6   A0A1Q3F490   + More
A0A182IPD9   A0A182GEV0   A0A1S4FNY1   A0A084WA17   A0A182QG18   A0A224Z2W8   A0A182LWM1   A0A182W2R4   A0A182FST2   A0A1I8MM58   A0A182XVI5   W5J2Z6   A0A1A9V3F3   B3NDR9   A0A0A1XJG2   A0A131Z692   A0A1B0ACP4   A0A034VDZ8   A0A1W4WJW9   A0A1W4WIX9   A0A182NGD9   A0A182LC97   A0A2M4BCE6   A0A2M4AI52   A0A2M4BCF1   A0A2M4AI88   B4PD30   A0A1B0FCG8   A0A0K8UXY1   Q7QBI9   A0A182SAV3   A0A182TE99   A0A1W4UHE0   A0A182XE78   A0A1A9W7X8   A0A1B0AYD1   A0A182P581   A0A0N0U7C9   A0A3Q3JFE0   A0A182VCC9   A0A3B3CIL6   A0A3Q2CJV7   A0A182HJ45   C3Z2H8   A0A2I4BDI1   A0A182JQD0   E9HLY0   A0A3B5QXG9   A0A146NJJ2   A0A3B5LZU9   A0A3Q2ZL73  

Pubmed

19121390    22118469    24845553    26823975    26483478    17510324    + More
24438588    28797301    25315136    25244985    20920257    23761445    17994087    25830018    26830274    25348373    20966253    17550304    12364791    14747013    17210077    29451363    18563158    21292972    23542700   

EMBL

BABH01035807    BABH01035808    AGBW02010359    OWR48642.1    KK852818    KDR15658.1    + More
NEVH01007392    PNF36005.1    GDHC01011362    JAQ07267.1    GFDL01012663    JAV22382.1    JXUM01058752    KQ562016    KXJ76900.1    ATLV01022002    KE525327    KFB47061.1    AXCN02001613    GFPF01009204    MAA20350.1    AXCM01000024    ADMH02002125    ETN58697.1    CH954178    EDV52202.2    GBXI01002798    JAD11494.1    GEDV01002252    JAP86305.1    GAKP01017406    JAC41546.1    GGFJ01001552    MBW50693.1    GGFK01007106    MBW40427.1    GGFJ01001551    MBW50692.1    GGFK01007136    MBW40457.1    CM000159    EDW94962.2    CCAG010009223    GDHF01020858    JAI31456.1    AAAB01008879    EAA08464.5    JXJN01005660    KQ435714    KOX79232.1    APCN01002124    GG666574    EEN53229.1    GL732682    EFX67254.1    GCES01154331    JAQ31991.1   

Proteomes

UP000005204    UP000007151    UP000027135    UP000235965    UP000075880    UP000069940    + More
UP000249989    UP000030765    UP000075886    UP000075883    UP000075920    UP000069272    UP000095301    UP000076408    UP000000673    UP000078200    UP000008711    UP000092445    UP000192223    UP000075884    UP000075882    UP000002282    UP000092444    UP000007062    UP000075901    UP000075902    UP000192221    UP000076407    UP000091820    UP000092460    UP000075885    UP000053105    UP000261600    UP000075903    UP000261560    UP000265020    UP000075840    UP000001554    UP000192220    UP000075881    UP000000305    UP000002852    UP000261380    UP000264800   

PRIDE

H9JX85   

Pfam

PF00232   Glyco_hydro_1        + More
PF08264   Anticodon_1
PF00133   tRNA-synt_1

Interpro

IPR018120   Glyco_hydro_1_AS        + More
IPR001412   aa-tRNA-synth_I_CS       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002300   aa-tRNA-synth_Ia       
IPR033708   Anticodon_Ile_BEm       
IPR014729   Rossmann-like_a/b/a_fold       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR017853   Glycoside_hydrolase_SF       
IPR001360   Glyco_hydro_1       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR002301   Ile-tRNA-ligase       
IPR023585   Ile-tRNA-ligase_type1       

SUPFAM

SSF47323   SSF47323        + More
SSF51445   SSF51445       
SSF50677   SSF50677       

Gene 3D

3.40.50.620     3.90.740.10    

CDD

cd07960  Anticodon_Ia_Ile_BEm

ProteinModelPortal

H9JX85   A0A212F4J2   A0A067QZ22   A0A2J7R594   A0A146LKG6   A0A1Q3F490   + More
A0A182IPD9   A0A182GEV0   A0A1S4FNY1   A0A084WA17   A0A182QG18   A0A224Z2W8   A0A182LWM1   A0A182W2R4   A0A182FST2   A0A1I8MM58   A0A182XVI5   W5J2Z6   A0A1A9V3F3   B3NDR9   A0A0A1XJG2   A0A131Z692   A0A1B0ACP4   A0A034VDZ8   A0A1W4WJW9   A0A1W4WIX9   A0A182NGD9   A0A182LC97   A0A2M4BCE6   A0A2M4AI52   A0A2M4BCF1   A0A2M4AI88   B4PD30   A0A1B0FCG8   A0A0K8UXY1   Q7QBI9   A0A182SAV3   A0A182TE99   A0A1W4UHE0   A0A182XE78   A0A1A9W7X8   A0A1B0AYD1   A0A182P581   A0A0N0U7C9   A0A3Q3JFE0   A0A182VCC9   A0A3B3CIL6   A0A3Q2CJV7   A0A182HJ45   C3Z2H8   A0A2I4BDI1   A0A182JQD0   E9HLY0   A0A3B5QXG9   A0A146NJJ2   A0A3B5LZU9   A0A3Q2ZL73  

PDB

1QU3     E-value=1.55537e-136,     Score=1251

KEGG

101736975    K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] | (RefSeq) isoleucine--tRNA ligase, mitochondrial

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0006428   GO:0002161   GO:0004553   GO:0005524   GO:0000049   GO:0005975   GO:0004822   GO:0005739   GO:0032543   GO:0004812   GO:0006412   GO:0006418   GO:0000166   GO:0005737  

Length:

1350

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03928

Exp number, first 60 AAs:

0.000790000000000001

Total prob of N-in:

0.00017

outside

1  -  1350

 

 

Pi

235.498246

Theta

162.933887

Tajima's D

1.215419

CLR

0.466022

CSRT

0.717814109294535

Interpretation

Uncertain