SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12218
Pre Gene Modal
BGIBMGA013585
Annotation
reverse_transcriptase_[Lasius_niger]
Location
Bomo_Chr20(+):9766989-9770570      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.663
 

Sequence

CDS
ATGGAAAAAGAAATATGTGATTTGTCATGCGATCCGGCTAACCCCCGGCGCCATGAGGTACCCGGGCCTTATGGTGTGAAATCTGCTACCGAAGACTGTGCAGGAGTGGGTAACCAGGCTCCCGTACCAGTGAATGCTACTGGAAAACGATATATTCAACAGACCTTTCATCCTAGTCTGTTCACAAGAACTAGATGCTCGTCACTGGGAAATACTCCCCCGCTAGAAACTACCACAGCATTAGAAGACAGTAGTTCTGATACTCTTGTACCAAAACCACCAGACTGGCAAAGGATCCCTGGAATTAGAAACCAAAAGAGAAAAAGACAAAAACTACAGTCACCCTCACCAGAAAAAATCACAACTAGCAATAGATTTAGCGAATTACCACTTGATTCTAAAGAACCCACGAAGGAGCCAATGGAAAAACGTCCTAGTAAGCCACCTCCTATAATATTATATGGAGTTGAAGATGTCAACAAACTCGTGGAGCTGCTGGAGTCTACAGTAGACAAAGACTGTTTTACAATAAAGATTGTCAATAGAAATCAACTGAGAGTAGTCTGCGTGGACACAGAAATATACAAAAACGTCATCACCTTAGTTCGAAAAAAAGGCCTTATAGGGCATACTTTCAACTTAAAAGACCAACGCTGCTATAGAATAGTCATCAAACACCTGCACCATACAACTCCACACAGTGCAATCAAAGAAGAAATCGAAAAGACGGGAAACAAAGTCCAAGGTGAAATTATAAACTCTAAGTTTGGACCAGACAAAAAACCAACTTCCACATTCTTTATTAATATCGAACCAGGAGCGAACAACGCCGCAGTGAAAGACATTAAATATATATACCATCAGTCAGTTATAATCGAAGATCCAAAAAAAAGAACCACGTTGCCACAATGTCAAAGGTGCCAGCAATATGGTCACTCTAAAAATTATTGCATGAGACCATACCGATGCGTGAAGTGTGGCCAAGGGCATAAAACCGCGGATTGCCCAAAGAAGGACCGCAATACACCAGCAAAATGCGCCCTTTGCCAAGGCGCACATCCGGCTAATTATAAAGGTTGTGAAGTTTACAAAGAAATTCTAAACAGACGTATGGCTAGGAATCTAACCTTCAGAACTAAAACACAAGTGACAAGCAGGACTGTCCCAATAGACTTTCGACCACAACCTCTCGAAAAAACACAAGAAAAACTTCTCTACTCGGATGTACTTAAAAAGGAAGAAACCCAGCCAACTACTACAATTAGCGTGAATAACAAATTAGAAGAATTACTCATCAAACAATCGGAGAAATTCGAATTAATCCTACAACAGATGAGCACTCTCATGAGTCTCATAGCTACTCTACTTGATGTTGTACTTGTCTCTGAAGCTCACTGTACAAGTAAAAGCAAAATTAGCATCAAAGGATGCCACATCTATGTGACTAATCATCCTGATGGAACTGGCCACGCGGGAACAGCCGTTGTGATAAGAAAATCAATTAAACATCAACTGCTGCCAGAATTTAGGACAAACCATATCCAAGCTACCACGGTTGCAGTCGAAACCCGCTGTGGACAACTGAATTTGTCAGCGGTATACTGCCCACCGAGACATACAATTAGCGCAACAAAGTTTACAGATTACTTCGCTACACTGGGGAGGAAATTTGTGGCTGGTGGAGACTGGAACGCCAAAAATACATATTGGGGCTCAAGGCTAACAACAACTAGAGGCAGACAACTAAAGCTAAGTCTCGAAGAAAACGGCCTCAGCACTGTCTCGTCTGGAGAACCAACTTACTGGCCTACGGATACAAATAAAAAACCAGATTTATTAGACTTCTTCATAGTAAAGGGACTCTCGAGAAATTATCTCAAGGCAGAGACTTGTCTAGACAGTAATTCTGACCACACACCTGTTCTCTTAACTATTAGTACGACGATTATTCATTATGACAAGCCTGATACCCTCTACAACAACCGCACTGATTGGGAAGGCTTCAAAGATTATATTGAAAACAATATCGAATTGAAAGTATCGTTGAAGACACCTGATGAAATAGATGAAGCAACTCAATATATTACTAACCTCATCCAAAAGGCTTGCTGGACTAATACACCCATTCCAAGGAAAAATTCTCAAGTGGTTGGAAATGTACCTCTCGAAGTAAAACACAAAATTTTAGAAAAAAGAAAGCTGCGTAGAATATGGCATCAAACTAGAAACAAAAGCGATAAGACTGCACTTAACAGAGCTATTAGAGAACTGAAAAATCTAATAGACAACGTGAATAATGCCACGCTACAAAATAATCTGGAAAACCTAACGGCCACAAAATCAACGGACCATTCACTCTGGAAATTTACAAAGGCACTGGTCAGACCACAACAATACAAATGTCCCATTAAAACTGTTTCTGGATGGACTAGGACAAGTACAGAGAAAGCGAACATGTTTGGAGAACATCTAGCCAACATCTTCAAGCCGAATGATAGCAATAATGTGGAGTTTGAAAATGCAGTTGAAAGTACACTGCAGCAAGACCTGCAACTCTCCACCCCACCAAGGCCAGTTACGATACAGGAGCTGAAAAGGACCATAATTAAATTACAAAATAAAAAAGCCCCTGGATTCGACCTCATCACCAAAGAAATTGTCACAGAGCTTCCCAAAAAGGCATTGGTCTTCCTGGTTACTCTCTTCAATAGTGTGCTTAGAGTGCAACATTTTCCCAGATTATGGAAAGTATCCATAGTGACAATGGTTCACAAGCCTGGAAAGCCCCCGGAAGAACCCACATCATACAGACCCATAAGCCTGTTGCCTGTGCTGTCCAAGATGTTTGAGAGGATTCTCTTGAGTAGAATATTACCCATACTCAATGAAAACAAAATTGTACCCAGACATCAATTCGGTTTTCGACAACAGCACTCTACCATAGAACAAGTGCATAGGGTCTGTGAAAATCAAATATTCACGATATAA
Protein
MEKEICDLSCDPANPRRHEVPGPYGVKSATEDCAGVGNQAPVPVNATGKRYIQQTFHPSLFTRTRCSSLGNTPPLETTTALEDSSSDTLVPKPPDWQRIPGIRNQKRKRQKLQSPSPEKITTSNRFSELPLDSKEPTKEPMEKRPSKPPPIILYGVEDVNKLVELLESTVDKDCFTIKIVNRNQLRVVCVDTEIYKNVITLVRKKGLIGHTFNLKDQRCYRIVIKHLHHTTPHSAIKEEIEKTGNKVQGEIINSKFGPDKKPTSTFFINIEPGANNAAVKDIKYIYHQSVIIEDPKKRTTLPQCQRCQQYGHSKNYCMRPYRCVKCGQGHKTADCPKKDRNTPAKCALCQGAHPANYKGCEVYKEILNRRMARNLTFRTKTQVTSRTVPIDFRPQPLEKTQEKLLYSDVLKKEETQPTTTISVNNKLEELLIKQSEKFELILQQMSTLMSLIATLLDVVLVSEAHCTSKSKISIKGCHIYVTNHPDGTGHAGTAVVIRKSIKHQLLPEFRTNHIQATTVAVETRCGQLNLSAVYCPPRHTISATKFTDYFATLGRKFVAGGDWNAKNTYWGSRLTTTRGRQLKLSLEENGLSTVSSGEPTYWPTDTNKKPDLLDFFIVKGLSRNYLKAETCLDSNSDHTPVLLTISTTIIHYDKPDTLYNNRTDWEGFKDYIENNIELKVSLKTPDEIDEATQYITNLIQKACWTNTPIPRKNSQVVGNVPLEVKHKILEKRKLRRIWHQTRNKSDKTALNRAIRELKNLIDNVNNATLQNNLENLTATKSTDHSLWKFTKALVRPQQYKCPIKTVSGWTRTSTEKANMFGEHLANIFKPNDSNNVEFENAVESTLQQDLQLSTPPRPVTIQELKRTIIKLQNKKAPGFDLITKEIVTELPKKALVFLVTLFNSVLRVQHFPRLWKVSIVTMVHKPGKPPEEPTSYRPISLLPVLSKMFERILLSRILPILNENKIVPRHQFGFRQQHSTIEQVHRVCENQIFTI

Summary

Uniprot
J9LYS0   J9LBF1   J9KWJ0   J9KE07   J9LNE5   A0A0J7K3N0   + More
J9M0H4   A0A1B0CFJ6   X1WKS2   J9KFS9   X1WK76  
EMBL
ABLF02041861    ABLF02012739    ABLF02012741    ABLF02021819    ABLF02021820    ABLF02055326    + More
ABLF02024784    ABLF02024792    ABLF02001804    ABLF02035179    ABLF02062794    LBMM01015125    KMQ84919.1    ABLF02034460    AJWK01010122    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    ABLF02021818    ABLF02037402    ABLF02037405    ABLF02037737    ABLF02035261    ABLF02035909    ABLF02066026   
Proteomes
UP000007819    UP000036403    UP000092461   
Pfam
PF00078   RVT_1        + More
PF07530   PRE_C2HC
PF14529   Exo_endo_phos_2
PF04937   DUF659
PF03372   Exo_endo_phos
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR006579   Pre_C2HC_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR007021   DUF659       
SUPFAM
SSF56219   SSF56219        + More
SSF140996   SSF140996       
SSF53098   SSF53098       
Gene 3D
3.60.10.10    
ProteinModelPortal
J9LYS0   J9LBF1   J9KWJ0   J9KE07   J9LNE5   A0A0J7K3N0   + More
J9M0H4   A0A1B0CFJ6   X1WKS2   J9KFS9   X1WK76  
PDB
1WDU     E-value=2.14915e-07,     Score=136

Ontologies

KEGG
101741111    no KO assigned | (RefSeq) post-GPI attachment to proteins factor 2-like
GO
GO:0003964  

Topology

Length:
995
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02292
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00005
outside
1  -  995
 
 

Population Genetic Test Statistics

Pi
191.19204
Theta
157.169747
Tajima's D
0.828307
CLR
0
CSRT
0.608319584020799
Interpretation
Uncertain
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