SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12218
Pre Gene Modal
BGIBMGA013585
Annotation
reverse_transcriptase_[Lasius_niger]
Location in the cell
Nuclear   Reliability : 3.663
 

Sequence

CDS
ATGGAAAAAGAAATATGTGATTTGTCATGCGATCCGGCTAACCCCCGGCGCCATGAGGTACCCGGGCCTTATGGTGTGAAATCTGCTACCGAAGACTGTGCAGGAGTGGGTAACCAGGCTCCCGTACCAGTGAATGCTACTGGAAAACGATATATTCAACAGACCTTTCATCCTAGTCTGTTCACAAGAACTAGATGCTCGTCACTGGGAAATACTCCCCCGCTAGAAACTACCACAGCATTAGAAGACAGTAGTTCTGATACTCTTGTACCAAAACCACCAGACTGGCAAAGGATCCCTGGAATTAGAAACCAAAAGAGAAAAAGACAAAAACTACAGTCACCCTCACCAGAAAAAATCACAACTAGCAATAGATTTAGCGAATTACCACTTGATTCTAAAGAACCCACGAAGGAGCCAATGGAAAAACGTCCTAGTAAGCCACCTCCTATAATATTATATGGAGTTGAAGATGTCAACAAACTCGTGGAGCTGCTGGAGTCTACAGTAGACAAAGACTGTTTTACAATAAAGATTGTCAATAGAAATCAACTGAGAGTAGTCTGCGTGGACACAGAAATATACAAAAACGTCATCACCTTAGTTCGAAAAAAAGGCCTTATAGGGCATACTTTCAACTTAAAAGACCAACGCTGCTATAGAATAGTCATCAAACACCTGCACCATACAACTCCACACAGTGCAATCAAAGAAGAAATCGAAAAGACGGGAAACAAAGTCCAAGGTGAAATTATAAACTCTAAGTTTGGACCAGACAAAAAACCAACTTCCACATTCTTTATTAATATCGAACCAGGAGCGAACAACGCCGCAGTGAAAGACATTAAATATATATACCATCAGTCAGTTATAATCGAAGATCCAAAAAAAAGAACCACGTTGCCACAATGTCAAAGGTGCCAGCAATATGGTCACTCTAAAAATTATTGCATGAGACCATACCGATGCGTGAAGTGTGGCCAAGGGCATAAAACCGCGGATTGCCCAAAGAAGGACCGCAATACACCAGCAAAATGCGCCCTTTGCCAAGGCGCACATCCGGCTAATTATAAAGGTTGTGAAGTTTACAAAGAAATTCTAAACAGACGTATGGCTAGGAATCTAACCTTCAGAACTAAAACACAAGTGACAAGCAGGACTGTCCCAATAGACTTTCGACCACAACCTCTCGAAAAAACACAAGAAAAACTTCTCTACTCGGATGTACTTAAAAAGGAAGAAACCCAGCCAACTACTACAATTAGCGTGAATAACAAATTAGAAGAATTACTCATCAAACAATCGGAGAAATTCGAATTAATCCTACAACAGATGAGCACTCTCATGAGTCTCATAGCTACTCTACTTGATGTTGTACTTGTCTCTGAAGCTCACTGTACAAGTAAAAGCAAAATTAGCATCAAAGGATGCCACATCTATGTGACTAATCATCCTGATGGAACTGGCCACGCGGGAACAGCCGTTGTGATAAGAAAATCAATTAAACATCAACTGCTGCCAGAATTTAGGACAAACCATATCCAAGCTACCACGGTTGCAGTCGAAACCCGCTGTGGACAACTGAATTTGTCAGCGGTATACTGCCCACCGAGACATACAATTAGCGCAACAAAGTTTACAGATTACTTCGCTACACTGGGGAGGAAATTTGTGGCTGGTGGAGACTGGAACGCCAAAAATACATATTGGGGCTCAAGGCTAACAACAACTAGAGGCAGACAACTAAAGCTAAGTCTCGAAGAAAACGGCCTCAGCACTGTCTCGTCTGGAGAACCAACTTACTGGCCTACGGATACAAATAAAAAACCAGATTTATTAGACTTCTTCATAGTAAAGGGACTCTCGAGAAATTATCTCAAGGCAGAGACTTGTCTAGACAGTAATTCTGACCACACACCTGTTCTCTTAACTATTAGTACGACGATTATTCATTATGACAAGCCTGATACCCTCTACAACAACCGCACTGATTGGGAAGGCTTCAAAGATTATATTGAAAACAATATCGAATTGAAAGTATCGTTGAAGACACCTGATGAAATAGATGAAGCAACTCAATATATTACTAACCTCATCCAAAAGGCTTGCTGGACTAATACACCCATTCCAAGGAAAAATTCTCAAGTGGTTGGAAATGTACCTCTCGAAGTAAAACACAAAATTTTAGAAAAAAGAAAGCTGCGTAGAATATGGCATCAAACTAGAAACAAAAGCGATAAGACTGCACTTAACAGAGCTATTAGAGAACTGAAAAATCTAATAGACAACGTGAATAATGCCACGCTACAAAATAATCTGGAAAACCTAACGGCCACAAAATCAACGGACCATTCACTCTGGAAATTTACAAAGGCACTGGTCAGACCACAACAATACAAATGTCCCATTAAAACTGTTTCTGGATGGACTAGGACAAGTACAGAGAAAGCGAACATGTTTGGAGAACATCTAGCCAACATCTTCAAGCCGAATGATAGCAATAATGTGGAGTTTGAAAATGCAGTTGAAAGTACACTGCAGCAAGACCTGCAACTCTCCACCCCACCAAGGCCAGTTACGATACAGGAGCTGAAAAGGACCATAATTAAATTACAAAATAAAAAAGCCCCTGGATTCGACCTCATCACCAAAGAAATTGTCACAGAGCTTCCCAAAAAGGCATTGGTCTTCCTGGTTACTCTCTTCAATAGTGTGCTTAGAGTGCAACATTTTCCCAGATTATGGAAAGTATCCATAGTGACAATGGTTCACAAGCCTGGAAAGCCCCCGGAAGAACCCACATCATACAGACCCATAAGCCTGTTGCCTGTGCTGTCCAAGATGTTTGAGAGGATTCTCTTGAGTAGAATATTACCCATACTCAATGAAAACAAAATTGTACCCAGACATCAATTCGGTTTTCGACAACAGCACTCTACCATAGAACAAGTGCATAGGGTCTGTGAAAATCAAATATTCACGATATAA
Protein
MEKEICDLSCDPANPRRHEVPGPYGVKSATEDCAGVGNQAPVPVNATGKRYIQQTFHPSLFTRTRCSSLGNTPPLETTTALEDSSSDTLVPKPPDWQRIPGIRNQKRKRQKLQSPSPEKITTSNRFSELPLDSKEPTKEPMEKRPSKPPPIILYGVEDVNKLVELLESTVDKDCFTIKIVNRNQLRVVCVDTEIYKNVITLVRKKGLIGHTFNLKDQRCYRIVIKHLHHTTPHSAIKEEIEKTGNKVQGEIINSKFGPDKKPTSTFFINIEPGANNAAVKDIKYIYHQSVIIEDPKKRTTLPQCQRCQQYGHSKNYCMRPYRCVKCGQGHKTADCPKKDRNTPAKCALCQGAHPANYKGCEVYKEILNRRMARNLTFRTKTQVTSRTVPIDFRPQPLEKTQEKLLYSDVLKKEETQPTTTISVNNKLEELLIKQSEKFELILQQMSTLMSLIATLLDVVLVSEAHCTSKSKISIKGCHIYVTNHPDGTGHAGTAVVIRKSIKHQLLPEFRTNHIQATTVAVETRCGQLNLSAVYCPPRHTISATKFTDYFATLGRKFVAGGDWNAKNTYWGSRLTTTRGRQLKLSLEENGLSTVSSGEPTYWPTDTNKKPDLLDFFIVKGLSRNYLKAETCLDSNSDHTPVLLTISTTIIHYDKPDTLYNNRTDWEGFKDYIENNIELKVSLKTPDEIDEATQYITNLIQKACWTNTPIPRKNSQVVGNVPLEVKHKILEKRKLRRIWHQTRNKSDKTALNRAIRELKNLIDNVNNATLQNNLENLTATKSTDHSLWKFTKALVRPQQYKCPIKTVSGWTRTSTEKANMFGEHLANIFKPNDSNNVEFENAVESTLQQDLQLSTPPRPVTIQELKRTIIKLQNKKAPGFDLITKEIVTELPKKALVFLVTLFNSVLRVQHFPRLWKVSIVTMVHKPGKPPEEPTSYRPISLLPVLSKMFERILLSRILPILNENKIVPRHQFGFRQQHSTIEQVHRVCENQIFTI

Summary

Pfam
PF00078   RVT_1        + More
PF07530   PRE_C2HC
PF14529   Exo_endo_phos_2
PF04937   DUF659
PF03372   Exo_endo_phos
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR006579   Pre_C2HC_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR007021   DUF659       
SUPFAM
SSF56219   SSF56219        + More
SSF140996   SSF140996       
SSF53098   SSF53098       
Gene 3D
PDB
1WDU     E-value=2.14915e-07,     Score=136

Ontologies

Topology

Length:
995
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02292
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00005
outside
1  -  995
 
 

Population Genetic Test Statistics

Pi
191.19204
Theta
157.169747
Tajima's D
0.828307
CLR
0
CSRT
0.608319584020799
Interpretation
Uncertain
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