Silkworm Genome Informatics Database

Gene

KWMTBOMO12217

Annotation

PREDICTED:_uncharacterized_protein_LOC101738890_[Bombyx_mori]

Location

Bomo_Chr20(+):9729579-9733434 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.428

CDS

ATGCTACGTCAAAAAATCATTCAACCCTCTATCTCACCATGGTCAGCACCTATATGGGTAGTACCAAAAAAACAAGACTCCTCCGGTAAACCTAAGTGGCGTATTGTTATCGACTATAGGAAGTTAAATCAAGTAACAATTGGTGATGCCTATCCTATTCCGAACATCACGGATATCCTGGACCAGCTAGGCCACAGTAAATACTTTACCACTCTTGACCTCGCGTCTTCGTTTCATCAAGTCAAGGTGAAAGATACCGAAAAAACAGCATTTAGTGTGCCCTCGGGCCATTACGAGTTCACGCGTATGCCTTTTGGTCTTCGAAATGCTCCTTCCACATTTCAAAGACTCATGAATATAGTACTAAGCGGCCTTCAAGGCACTCATTGCTATACATATTTAGATGATATAGTCGCTTTCAACCACGATCTCTTGTCTCATTGTCAAAACCTCAGAAACATATTTCATAAGCTCCGTGAACACAACCTAAAATTACAACCGGACAAATGTGAGTTCTTTCGTCGAGAAGCACAGTATCTTGGACATATTATTTCAGATAAAGGAGTAATGCCTGACCCCAAGAAGGTTCTCTGTGTTACTAACTTCCCAGTTCCGAAGTCTCCACGTGATATAAAATCATTTCTAGGTTTAGTTGGTTATTATCGTCGCTTCATTGAAAATTTCTCCCATATTACTAAAGCTTTAACTAGCCTTCTAAAAAAGGACGCTACGTTTCAATGGGGTTGTGAACAACAAAAAGCCTTCGACGAACTGAAAAACAAAATAACCTCGGCTCCTATCCTTCAGTACCCTGATTTTACTAAACCCTTCGTACTAACAACAGACGCATCCAATTACGCTGTTTCTGCTATTCTTTCTCAAGGCGAAGTAGGTCAAGATCTCCCAATAGCTTTCGCATCTCGAACCCTGAACAAATCAGAAGGAAATTATTCTACAACCGAAAAAGAATGTTTAGCTATCATTTTCGGCACAAAAGTTTTCAGACCTTATCTGTATGGACACAAGTTTAAAATCGTGACCGATCATAAACCTTTGCAGTGGCTATTTAACTGCAAAGACCCCGGTTCTAAGTTAGTTAGGTGGAGGTTAAAATTAGAAGAATTCGACTACGAGATTGAATACAAAAAGGGGAAGTTAAATTGTAACGCAGATTCCTTATCTCGCAACCTCGTTCATACTCTCGATGAACCAACCGTTTTACAACCACCCCCATACCTTGATGAACAGTCTCGAGTAGATGAGCCCCTTACGTTCGATGACTTGTCTCCGTTACCACCCCCCATAGACTTCAACGCCCCAGGTTCCGTCCCTTCAGAAACCCCTCTTGGACAAGAAATGCCTAGCCACCCTACTCAACCTCCTACAAAAGTCCCTTCTCCATCACTGCCCTCGCAACCGTCACCGTCAACTCCTGAAACCTATGAACAATATCTAAAAGTGTCCCGACAATCGAAAGATCCGTTTAACACAAATATTCAGGAATTTAACGACTCTCTACTTAAAGCTAAATGTAAGCTGATAGCCTACCCTACCTCAATTGACCTTGATGAGTCTGTACCATATTGTTCAGAAATCATAGAAATGTCCACAACTATGCCTGACATACGTGAAGTGGAGAGAGAACTGTACTCATTTTATTCTACCGATTCCAACGACGGTGTCAAGTTCTCTGATGCTATCGACCAAGTACAGTCAGACGAAAAAGCTTTAGCGCATCTTATGCGTGATAATATACATGTGATAAAATCTACAATTTCCACATTTAATAATTCAATGTTAAAATTCAGTGAAAACGAGAAAACGTCTAAATAA

Protein

MLRQKIIQPSISPWSAPIWVVPKKQDSSGKPKWRIVIDYRKLNQVTIGDAYPIPNITDILDQLGHSKYFTTLDLASSFHQVKVKDTEKTAFSVPSGHYEFTRMPFGLRNAPSTFQRLMNIVLSGLQGTHCYTYLDDIVAFNHDLLSHCQNLRNIFHKLREHNLKLQPDKCEFFRREAQYLGHIISDKGVMPDPKKVLCVTNFPVPKSPRDIKSFLGLVGYYRRFIENFSHITKALTSLLKKDATFQWGCEQQKAFDELKNKITSAPILQYPDFTKPFVLTTDASNYAVSAILSQGEVGQDLPIAFASRTLNKSEGNYSTTEKECLAIIFGTKVFRPYLYGHKFKIVTDHKPLQWLFNCKDPGSKLVRWRLKLEEFDYEIEYKKGKLNCNADSLSRNLVHTLDEPTVLQPPPYLDEQSRVDEPLTFDDLSPLPPPIDFNAPGSVPSETPLGQEMPSHPTQPPTKVPSPSLPSQPSPSTPETYEQYLKVSRQSKDPFNTNIQEFNDSLLKAKCKLIAYPTSIDLDESVPYCSEIIEMSTTMPDIREVERELYSFYSTDSNDGVKFSDAIDQVQSDEKALAHLMRDNIHVIKSTISTFNNSMLKFSENEKTSK

Uniprot

A0A3Q0JL77 X1WLD0 A0A3Q0JCA5 A0A3Q0JG65 X1WLJ7 A0A0A9Z1T0 + More
A0A0A9XJZ5 K7JCQ6 A0A146L836

Pubmed

25401762 20075255 26823975

EMBL

ABLF02041728 ABLF02011176 ABLF02041729 GBHO01004397 JAG39207.1 GBHO01026164 + More
JAG17440.1 AAZX01005108 GDHC01015253 JAQ03376.1

Proteomes

UP000079169 UP000007819 UP000002358

Pfam

PF17921   Integrase_H2C2        + More
PF17917   RT_RNaseH
PF00078   RVT_1
PF01661   Macro
PF17919   RT_RNaseH_2
PF00665   rve
PF12259   Baculo_F
PF02902   Peptidase_C48

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001969   Aspartic_peptidase_AS
IPR001584   Integrase_cat-core
IPR000477   RT_dom
IPR041373   RT_RNaseH
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR021109   Peptidase_aspartic_dom_sf
IPR041577   RT_RNaseH_2
IPR002589   Macro_dom
IPR036875   Znf_CCHC_sf
IPR022048   Envelope_fusion-like
IPR003653   Peptidase_C48_C
IPR038765   Papain-like_cys_pep_sf

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756
SSF54001   SSF54001

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A3Q0JL77 X1WLD0 A0A3Q0JCA5 A0A3Q0JG65 X1WLJ7 A0A0A9Z1T0 + More
A0A0A9XJZ5 K7JCQ6 A0A146L836

PDB

4OL8 E-value=3.23788e-68, Score=658

KEGG

105841713 no KO assigned | (RefSeq) uncharacterized LOC105841713

GO

GO:0008270 GO:0003676 GO:0015074 GO:0004190 GO:0008234

Length:

610

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00507999999999999

Exp number, first 60 AAs:

0.00035

Total prob of N-in:

0.00107

outside

1 - 610

Pi

116.479103

Theta

101.524395

Tajima's D

0

CLR

23.068901

CSRT

0.370681465926704

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree