Silkworm Genome Informatics Database

Gene

KWMTBOMO12215

Pre Gene Modal

BGIBMGA014153

Annotation

PREDICTED:_KH_domain-containing?_RNA-binding?_signal_transduction-associated_protein_2-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr20(-):9591701-9647969 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.702

CDS

ATGCTGGACATCACGCGAGACAAGCCCGTCAAGGTCTGCGTGCGAGTCGTGGTTCCAGTGAGGGATCACCCTAAATTTAATTTCGTGGGGAAACTTCTGGGGCCCAAAGGAAACTCGTTGAAGAGACTTCAGGAAGACACAATGTGCAAGATGGCGGTGTTGGGTAGAGGATCAATGAAAGACAGACAAAAGGAGGAGGAGCTTCGTGTCTCCGGAGATCCGAAGTTCGCGCATTTATCAGACGAACTCCACGTCGAGATCAGTGCGTTCGCGACACCAGCCGAAGCCCACGCCAGGATCGCGTATGCTTTGGCCGAGCTACGAAGGTTTTTGGTACCCGACTACAATGACGATATACGACAAGAGCAAATGCTGGAGATGCAGATCTTGTCCTCACAGAATGACCAGAGGCATCTCACTCCACCAAACTCTTCCAGGAGCGGCAGCGAGGAAACCCTGCCTCTGAGAGACACTGGCAACAAGCCTAGGCTGCCAACAGTTCAGCCGTCACCGGCTCCGACGGCCATGCCCAGCGCCATCGCAGTCAGCCACGCGCCCACCAGCCGCGACTTCTCCCCTCCAGCTCCCACACCGGCTCCTGAACATCTGGCTGCTCATCACCAGTTGGCAGCCGGGCACACTGGTCACGGGATGCTGGTCGGCGGAGGCATGATACAGCAGCCCCCTCATCATTTGATCACCCAAAACTCTATACTCGGTACAGGCGACATCCTGGGCTTGAGCAGTCCCGTGCTTGGTGGAGTGCTACACGCGCACCCAGCACTGCGTGGGGTGAAGCCTGCAGCAGTCCACGCTCTGGCGACGCAAGGTGCGGGTGGGTCGGCGGGTACCAGCACGGCACGCAAGCGTCCCCTGCTGGGCGGAGCGCGGGCCGCAATGTCTCCGACTAAACGGGCCGTGATGACCCTGCTCGCGAGGGCTAGGGCTGCCACGCACAAGCACGCAACCACATGGCCTGCGCCACACGAGCACACGGCTTTACTACCATTGATAAGGGACGACTTCGTGGCTGGTGTTGGTGTCAACATTAATTTAGCGTAA

Protein

MLDITRDKPVKVCVRVVVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMCKMAVLGRGSMKDRQKEEELRVSGDPKFAHLSDELHVEISAFATPAEAHARIAYALAELRRFLVPDYNDDIRQEQMLEMQILSSQNDQRHLTPPNSSRSGSEETLPLRDTGNKPRLPTVQPSPAPTAMPSAIAVSHAPTSRDFSPPAPTPAPEHLAAHHQLAAGHTGHGMLVGGGMIQQPPHHLITQNSILGTGDILGLSSPVLGGVLHAHPALRGVKPAAVHALATQGAGGSAGTSTARKRPLLGGARAAMSPTKRAVMTLLARARAATHKHATTWPAPHEHTALLPLIRDDFVAGVGVNINLA

Uniprot

A0A2H1WKN0 A0A2W1BPF7 A0A212EHY1 A0A0N0PB57 A0A194QFP5 A0A2A4JGQ2 + More

Pubmed

28756777 22118469 26354079

EMBL

ODYU01009307 SOQ53633.1 KZ150038 PZC74610.1 AGBW02014747 OWR41113.1 + More
KQ461053 KPJ09945.1 KQ459053 KPJ04234.1 NWSH01001647 PCG70572.1

Proteomes

UP000007151 UP000053240 UP000053268 UP000218220

Pfam

PF00013 KH_1

Interpro

IPR004088   KH_dom_type_1        + More
IPR036612   KH_dom_type_1_sf
IPR004087   KH_dom

SUPFAM

SSF54791 SSF54791

Gene 3D

3.30.1370.10

ProteinModelPortal

A0A2H1WKN0 A0A2W1BPF7 A0A212EHY1 A0A0N0PB57 A0A194QFP5 A0A2A4JGQ2 + More

PDB

5EMO E-value=3.87018e-36, Score=379

KEGG

101740004 no KO assigned | (RefSeq) KH domain-containing, RNA-binding, signal transduction-associated protein

GO

GO:0003723 GO:0003676 GO:0006811 GO:0016020 GO:0016788 GO:0007165 GO:0005525 GO:0008033 GO:0016787

Length:

353

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01542

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01871

outside

1 - 353

Pi

263.216148

Theta

185.046064

Tajima's D

0

CLR

0.63532

CSRT

0.36293185340733

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics