Silkworm Genome Informatics Database

Gene

KWMTBOMO12214 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014186

Annotation

PREDICTED:_transient_receptor_potential_channel_pyrexia-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr20(+):9547850-9568802 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.334

CDS

ATGTATACTGATCCAGATATAGAGAATGGTCCTGATGATGAAGAGGCGCAGGACAATCTTCAGCCTCTGCTCGGAGTCGGGGTGGACGGTCGCGTGGCCAGGCAGCGGCCAGCTCGACCCAGGAACTTGGGTCTTGCTGATGCTATGTCGAACCCGGCCCGTTCGCTTCCGAAGCTAACGCTTCCTGATATGACGCCTTCATCGGTGTCCTCGACTGTGAATAACACTCCACAAGACACCGGCAGCACCATGTCCAAGCCTTGGAGACGCAGCGACAGAAGACTGAGGAGACTCAACACCGAGTTGCTTGAGGCCATTGAGAACCACAATGTAGAGGAAATCGAAAGATTACTCAACTCTGGAGCCAATCCGAACGCCACCTGCCGTCTCGATTTGGTGTCTGCGTGCCACATGGCAGCTCTGACCGGAGGGGAAGCTTTAACGCTGCTCATAAAGTTCGGTGCGGAAAAGCTCAGAGTCGACAGGGTAGGAAGAACGCCCCTGCATCTCGCCACATGGGCTGGAAATGCCAGACAGGTGGCTATCCTGTTGGAATTCCCTGAAGATATGCAGGAGCGGGTGGAAAGCGAGAGTATGTCGTCTGAAACAGAAGAAGACGTTCGGAAGCTGTGTCCTTTGATTAAAGAGATGACAGACGTGAGATGCGACCTGGGCGAGGTGAACGTTCTGTTGCCTAAGACTTGGAAGGACAACATCGACCATGACTGCAAGGACATCAGAGGAACTATAAAGCTATTCCAAGCAGGCTGGACGCCGCTACACGTCGCCTCCTCCTGCGTCCGCCGACACTGCACCAGACTCTTGTTGGCGGCTGGTGCAAATCCCAACATCTGCGACGTGGCTGGCCGAACTCCTTTAGACGTCGCCGGCTACGCTTATTATCACAAAAAAGAAGTGAACGTTAAGCACTTAGGTGAAGTCATCAGAATGCTACTGAAGGCTGGTGGAAGATACAACACCATGAGATCTCGTGGTCTAAACAACCTGGACACTCCTCTTCATACTGCGGTAGAGCTAGAAAGCTTGGATGCTATCAGAGAGCTTTTAGATGCAGGTGCTTCTGTGAAATGCTTAAATACATCGGGCTTGACACCTTTGCATGTCTGCGTTAAGAAAAAACTTGAGGAACATTTGCAGGTATTGGCAAACTATGATTACATGAACGCGGATCCTATGGCGGCCGTAGTGGATGTGAAGGACAGTCAAGGGCATACAGTCCTACAGGCTGCTGTCGAGGCTGCGTGGGTGCCAGGTGTCTGTGTGGCATTGGAGGCAGGCGCTGACGTTACGCTGACGGCCAACGACGGCGAAACTCCTATTCATTCGGCCGCAGCTCTCGGTAACTTAGACGTGCTCAACGAAATCCTTAGCGTTGCTAAGCAAAAAGACGCAATCGACTATCAGAACCAAGAAGGCGAGACCGCTCTCTTCAAGGCCATAATTCACGGACATTTAGAATGCGTCAAACACATCATTAGCGAAGGTGGCTCCATGAAGATCGCACTACCCGGCGACGTTAACGTCTTACACGTCGCAGCCGATTACGGGCATTTAGATATACTAGAATATTTACTAGATTACGACGAAGCTGTGACTAGGAACTTGATTAACTCCCTAACAGCCGGAGATAGGAGAGGCTTCGGACCAATACACTTCGCGGTCGCGAACAAACACGAGAATTGCGTTTCCTTGTTACTTTCAAAGAACGCTGACATTCGACTCAGGACTACATGTAGTCCACATAAAGCATCAACTCCCCTGCACATCGCCGCTGTTCGTAATCACGTTGAAATAACAAAGATCCTGTTGAAATTCGATACGACCATCATATATGAAGTGAATAGTCTTGGTTGGTATCCGTTGCACGCGGCTAGCCATCACGGCAGCAGGGATGTCATAACGTTACTGCTGAAAGAGGGAGCCGATCTCTCAGGACATACGGACGGACCGAAGAAATACAAGCGAACGGCCATTGATATGATCATTCATAATTTATCAAAACCGACAGAATTTATGGAAGACGTATTCGACTCGTATATATCTAGTAACGGCCAGGACCTCCAGGATCCGAACTGTATTATCACGATTGATTACGGTATATTGATGCCGAGAGTCTGCGAGATGGAACAGATGAAAGTGATCGAGGCGCTTTTGAAGACCGGCAACAGATACGGACAGAGGAAGCTCCTGGTACATCCGTTGGTCGAGAGCTTCCTGTATCTCAAATGGAAAGCTTTGTTGCCGTTCTTCTATACAATAATGTTCGTTTACGGATTCTTCGTGCTGTCGCTTACCATATTCATAGTGTCGGTTTTCTTTTACAAAGACACGAAAGTTCCTGCTCCTATTTGGCTGAACACGACGGTTTGGAGCTACGTAGTGTATGCGACAATCAGCTTGATATTGTTACAGGAGGTCCTGTATATGAACGTGAAAAGTAGTAGGTACTTCCTACAGCTGGAAACTTGGGTGAAATTCGGGTCTCTGGGCTTAGCGGTTATACTACCGTATACAGTGGTGGTCGTCTCTGTACACGAGGCTGATTGGCCTCGACACGTGGCCACCGTGGCGTTGTTGCTCTCCTGGCTGGAAATGATGTTTTTGCTGTCCAGATTTCCGAACTGGGGTTACTATGTTTTGATGTTCGGTAAAGTCGCTTCGAATGTCGTCAAGATTCTGCTAACATTTGCCTTCCTTGTAATTGGGTTCGCACTAAGCTTCATGATCCAGTTCCGCTCTCAAATGCCTTTCGAGGGTCCTTGGGCAGCTCTGGTTAAGACAATAGTTATGATGACATCAGAATTCGACTACGCGGCCCTCTTCGACGAGGCACATTCCAAAGAATTGGCCACGTCTTTGATTATAGTCCGGATAATATTTTTAGTGTTTCTAATATTGGCGGCGATTGTCTTAATGAATTTACTAGTCGGTGTAGCGGTTAACGATATCAATGATTTAGAGATATTAGGGAATATAAGGAGGCTGGCCAAACAAGTAGAATTTTTGGGAACATTAGACACTTTAGTTTACAATAAATTATTCAGTAAGACTTTACCGAGAAGACTCAATGAGAAACTTAAGAAAAGACGTAACGTACCACCGGTTATGACTCTGAGTCCCGGGAAACCAAGGTGGAAGTATTCTAAGGTGCTGCCATCCAGAATAAGAGATGAAATATTCAATAAAGCTCAGAGACAAAAGAAGCAAATGGACGATGAACTTGGCTTGCAACACTTTAGGAATTTAATGGATGAAATGCACGATGTCATCGTTAAAAACAAAGTCGTGAAAGCTGTAGAATATCCGGATTTGATTAAAGATAAAAATGTTAAGAAGAACGATGAAATAGTTCAACATTTAGATGACATTGATGATGCTGTGGAGGATATGAAGAACGAGGCGAAAGTGTATGCGACAGAATCGAAGTCGAAATTTGATGTTTTAAACGTTAAAATGGATCAGATGTCGCTAGAAATCGAAGCTATAAAATTGTTTTTGAGCAGATTAGAAAGTAAATTGGGTAGATAA

Protein

MYTDPDIENGPDDEEAQDNLQPLLGVGVDGRVARQRPARPRNLGLADAMSNPARSLPKLTLPDMTPSSVSSTVNNTPQDTGSTMSKPWRRSDRRLRRLNTELLEAIENHNVEEIERLLNSGANPNATCRLDLVSACHMAALTGGEALTLLIKFGAEKLRVDRVGRTPLHLATWAGNARQVAILLEFPEDMQERVESESMSSETEEDVRKLCPLIKEMTDVRCDLGEVNVLLPKTWKDNIDHDCKDIRGTIKLFQAGWTPLHVASSCVRRHCTRLLLAAGANPNICDVAGRTPLDVAGYAYYHKKEVNVKHLGEVIRMLLKAGGRYNTMRSRGLNNLDTPLHTAVELESLDAIRELLDAGASVKCLNTSGLTPLHVCVKKKLEEHLQVLANYDYMNADPMAAVVDVKDSQGHTVLQAAVEAAWVPGVCVALEAGADVTLTANDGETPIHSAAALGNLDVLNEILSVAKQKDAIDYQNQEGETALFKAIIHGHLECVKHIISEGGSMKIALPGDVNVLHVAADYGHLDILEYLLDYDEAVTRNLINSLTAGDRRGFGPIHFAVANKHENCVSLLLSKNADIRLRTTCSPHKASTPLHIAAVRNHVEITKILLKFDTTIIYEVNSLGWYPLHAASHHGSRDVITLLLKEGADLSGHTDGPKKYKRTAIDMIIHNLSKPTEFMEDVFDSYISSNGQDLQDPNCIITIDYGILMPRVCEMEQMKVIEALLKTGNRYGQRKLLVHPLVESFLYLKWKALLPFFYTIMFVYGFFVLSLTIFIVSVFFYKDTKVPAPIWLNTTVWSYVVYATISLILLQEVLYMNVKSSRYFLQLETWVKFGSLGLAVILPYTVVVVSVHEADWPRHVATVALLLSWLEMMFLLSRFPNWGYYVLMFGKVASNVVKILLTFAFLVIGFALSFMIQFRSQMPFEGPWAALVKTIVMMTSEFDYAALFDEAHSKELATSLIIVRIIFLVFLILAAIVLMNLLVGVAVNDINDLEILGNIRRLAKQVEFLGTLDTLVYNKLFSKTLPRRLNEKLKKRRNVPPVMTLSPGKPRWKYSKVLPSRIRDEIFNKAQRQKKQMDDELGLQHFRNLMDEMHDVIVKNKVVKAVEYPDLIKDKNVKKNDEIVQHLDDIDDAVEDMKNEAKVYATESKSKFDVLNVKMDQMSLEIEAIKLFLSRLESKLGR

Similarity

Belongs to the transient receptor (TC 1.A.4) family.

Uniprot

H9JXC1 A0A2W1BIC4 A0A0L7LR23 A0A0N0PAY8 A0A3S2PGK1 A0A1C9U0A6 + More
A0A2Z5U7E0 A0A1C9U082 A0A212FKB1 A0A2H1WSM3 A0A2W1BC47 A0A2A4JJW4 A0A2A4JKC3 A0A2W1BHT6 A0A2W1BP05 A0A2A4J312 A0A2J7QX02 A0A067R3W4 A0A2P8YUH6 T1HC35 A0A0A9X472 A0A0A9WWU2 T1HC34 A0A2P8YUJ6 T1H968 A0A1W4WPQ0

Pubmed

19121390 28756777 26227816 26354079 22118469 24845553 + More
29403074 25401762

EMBL

BABH01035752 KZ150038 PZC74608.1 JTDY01000286 KOB77902.1 KQ461113 + More
KPJ08921.1 RSAL01000042 RVE50807.1 KU130118 AOR16347.1 AP017512 BBB06835.1 KU130119 AOR16348.1 AGBW02008076 OWR54184.1 ODYU01010759 SOQ56070.1 KZ150152 PZC72832.1 NWSH01001276 PCG71884.1 PCG71883.1 PZC74612.1 PZC74606.1 NWSH01003774 PCG65830.1 NEVH01009411 PNF33105.1 KK852777 KDR16772.1 PYGN01000353 PSN47911.1 ACPB03006264 GBHO01031702 GBHO01031699 JAG11902.1 JAG11905.1 GBHO01031703 JAG11901.1 PSN47910.1 ACPB03024931

Proteomes

UP000005204 UP000037510 UP000053240 UP000283053 UP000007151 UP000218220 + More
UP000235965 UP000027135 UP000245037 UP000015103 UP000192223

PRIDE

H9JXC1

Pfam

PF00520   Ion_trans        + More
PF12796   Ank_2
PF00023   Ank
PF03259   Robl_LC7

Interpro

IPR002110   Ankyrin_rpt        + More
IPR005821   Ion_trans_dom
IPR020683   Ankyrin_rpt-contain_dom
IPR036770   Ankyrin_rpt-contain_sf
IPR004942   Roadblock/LAMTOR2_dom

SUPFAM

SSF48403 SSF48403

Gene 3D

1.25.40.20

CDD

cd00204 ANK

ProteinModelPortal

H9JXC1 A0A2W1BIC4 A0A0L7LR23 A0A0N0PAY8 A0A3S2PGK1 A0A1C9U0A6 + More
A0A2Z5U7E0 A0A1C9U082 A0A212FKB1 A0A2H1WSM3 A0A2W1BC47 A0A2A4JJW4 A0A2A4JKC3 A0A2W1BHT6 A0A2W1BP05 A0A2A4J312 A0A2J7QX02 A0A067R3W4 A0A2P8YUH6 T1HC35 A0A0A9X472 A0A0A9WWU2 T1HC34 A0A2P8YUJ6 T1H968 A0A1W4WPQ0

PDB

6MOL E-value=2.20495e-38, Score=404

KEGG

101739591 no KO assigned | (RefSeq) transient receptor potential channel pyrexia-like

GO

GO:0016021 GO:0005216 GO:0006811 GO:0005515 GO:0016020 GO:0016788 GO:0007165 GO:0005525 GO:0008033 GO:0003676 GO:0016787 GO:0055085

Length:

1182

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

134.54256

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00427

outside

1 - 758

TMhelix

759 - 781

inside

782 - 787

TMhelix

788 - 810

outside

811 - 829

TMhelix

830 - 852

inside

853 - 858

TMhelix

859 - 877

outside

878 - 891

TMhelix

892 - 914

inside

915 - 964

TMhelix

965 - 987

outside

988 - 1182

Pi

244.668938

Theta

165.420556

Tajima's D

1.032387

CLR

0.31377

CSRT

0.668816559172041

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics