Gene

KWMTBOMO12213  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014155

Annotation

PREDICTED:_KH_domain-containing?_RNA-binding?_signal_transduction-associated_protein_3-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr20(-):9492921-9499419      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.927

CDS

ATGGCAGATAAATACGACAAAAATGGGTATAATAGTGGCGATTTTAAAAGAAATACCACACAAGGTAAACCAGAGGAACTCGATCAAAATGGCGAAGAAGGTATCAAAATAAATGAAAAAGCCGGTGAATACATGCGTGAACTACTTAGCGAGAAGATCAAACTCAATAATTCAAAATTTCCACTATCTATGAAGTTAATTGATCAAGAAGTAACAAAAGTACAGGCTAGTGGTCGTATCACCAAGGACTCAAAATATGTGGATGTGTTCCGTGACAAACCAACCAAAGTCACAGTTAAAGTTCTTGTGCCAATTAAGGAACATCCTAAATTCAACTTTGTGGGAAAACTATTAGGTCCAAAAGGAAACACTATGAAGCAATTACAAGAAGACACACTGTGCAAGATGGCTGTACTCGGCAGGGGCTCAATGAGAGACAGGCAAAAAGAAGAAGAACTCCGCCAGTCATTAGACCCTAAGTACTCTCATCTAGCTGACGATCTTCATGTTGAGATATCGGCCATAGCACCACCAGCAGAGGCTCACGCTCGAATTGCATATGCACTTGCAGAAGTCAAAAAATACTTAGTGCCGGATACAAATGAAACTGTATGGATGTCACAGATGAGAGATATAGATGTCAGAGGGGCCGAGCGGACGCACCCGTACCGCGAGCCCGCGCCCGTCATGCACCCCCCGGCCGCCATGCCGCCGCGATCCATGCCTCCCAAGAACAAGATCATCAGCATCCTGGAACGGGCCCGGACTGCGATGGAGGGCTCTTACTCCTACGAAGACCATTACGCACCACCCGAACCACCAATGCGAGGGGGCGGGCGCGCGGCCGAGCCGGACGTGTACTACGAGCGCGGCCACGAGCGGTTCTACGAGGACGAGGCGCACTACCGCGAGGAGCCGCGCGAGTACAAGGCGTCGTCGCGCGACGTGGGCACGCGCCGCCCCGCGCCGCACCCGCCCGCGCACCGGCACTACCCGCGCGCCGCGCCCTACTCCCGGTACTGCACGCGCGACGCTCGACACTTTAATTATTTTCCCTACCTATGCTGA

Protein

MADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDKPTKVTVKVLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDIDVRGAERTHPYREPAPVMHPPAAMPPRSMPPKNKIISILERARTAMEGSYSYEDHYAPPEPPMRGGGRAAEPDVYYERGHERFYEDEAHYREEPREYKASSRDVGTRRPAPHPPAHRHYPRAAPYSRYCTRDARHFNYFPYLC

Uniprot

H9JX90   A0A2H1VAK4   S4PHQ0   A0A3S2LP05   A0A194QH17   I4DLI8   + More
A0A1E1WJJ5   A0A1E1W6A2   A0A212FKC8   A0A0N1PGU7   A0A1Y1LZM5   A0A1Y1LYC4   D6WQQ8   A0A1B6HPN6   A0A0C9RAP3   A0A310SID3   A0A0M9A1M2   E2A277   V9IDT1   A0A088AGZ4   A0A0L7QQ89   A0A154P6D9   A0A1B0GJS9   A0A1L8DGC0   A0A026W6X1   K7J211   U5EHW9   A0A195BD62   A0A158NW17   A0A195FT07   A0A195DI69   E2B8K4   A0A1B6D4L2   A0A151XHV3   F4WBR9   A0A182LSL3   A0A195C2Z1   A0A1J1HZJ2   A0A182NSS5   A0A182R0N6   A0A182KBG1   A0A0T6BHP8   A0A182IEQ5   A0A182RFY1   A0A182VY99   A0A2R7WP37   A0A182XKC3   A0A182KWS6   Q7PHL1   A0A182PVH5   A0A182V033   A0A182TXE3   B4QAU3   Q7KNS5   A0A3B0J2H4   A0A1Q3G0T6   A0A1W4V0U0   A0A1Q3G0F3   B4HMU2   A0A0B4KFT9   A0A1Q3G0E4   A0A0J9REZ2   A0A1Q3G0F7   A0A1Q3G0P3   B3MG75   A0A1Q3G0J6   B0X576   B4P7Z2   B3NNQ8   A0A3L8E2V9   O44433  

Pubmed

19121390    23622113    26354079    22651552    22118469    28004739    + More
18362917    19820115    20798317    24508170    20075255    21347285    21719571    20966253    12364791    14747013    17210077    17994087    9804767    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17550304    30249741    9562906   

EMBL

BABH01035746    BABH01035747    ODYU01001265    SOQ37244.1    GAIX01005720    JAA86840.1    + More
RSAL01000042    RVE50805.1    KQ459053    KPJ04230.1    AK402156    BAM18778.1    GDQN01003899    JAT87155.1    GDQN01008551    JAT82503.1    AGBW02008076    OWR54186.1    KQ461113    KPJ08920.1    GEZM01044060    GEZM01044056    GEZM01044055    JAV78541.1    GEZM01044059    GEZM01044057    JAV78542.1    KQ971354    EFA07438.2    GECU01031066    JAS76640.1    GBYB01009030    GBYB01010152    JAG78797.1    JAG79919.1    KQ759852    OAD62538.1    KQ435794    KOX73959.1    GL435922    EFN72482.1    JR039244    AEY58601.1    KQ414787    KOC60795.1    KQ434827    KZC07506.1    AJWK01022208    AJWK01022209    AJWK01022210    GFDF01008582    JAV05502.1    KK107447    EZA50774.1    GANO01002854    JAB57017.1    KQ976511    KYM82498.1    ADTU01027694    KQ981280    KYN43432.1    KQ980824    KYN12588.1    GL446337    EFN87990.1    GEDC01016783    JAS20515.1    KQ982123    KYQ59891.1    GL888066    EGI68347.1    AXCM01003855    KQ978317    KYM95207.1    CVRI01000036    CRK92946.1    AXCN02000300    LJIG01000070    KRT86870.1    APCN01009262    KK855197    PTY21382.1    AAAB01008904    EAA44495.4    CM000362    EDX07494.1    AF096272    AE013599    AY095201    AAC72375.1    AAF57857.1    AAM12294.1    AAM70876.1    AAM70877.2    OUUW01000001    SPP75345.1    GFDL01001643    JAV33402.1    GFDL01001771    JAV33274.1    CH480816    EDW48292.1    AGB93582.1    GFDL01001781    JAV33264.1    CM002911    KMY94547.1    GFDL01001762    JAV33283.1    GFDL01001671    JAV33374.1    CH902619    EDV36770.2    GFDL01001720    JAV33325.1    DS232369    EDS40722.1    CM000158    EDW92147.2    CH954179    EDV55615.2    QOIP01000001    RLU26328.1    AF038582    AAB97002.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000053240    UP000007266    + More
UP000053105    UP000000311    UP000005203    UP000053825    UP000076502    UP000092461    UP000053097    UP000002358    UP000078540    UP000005205    UP000078541    UP000078492    UP000008237    UP000075809    UP000007755    UP000075883    UP000078542    UP000183832    UP000075884    UP000075886    UP000075881    UP000075840    UP000075900    UP000075920    UP000076407    UP000075882    UP000007062    UP000075885    UP000075903    UP000075902    UP000000304    UP000000803    UP000268350    UP000192221    UP000001292    UP000007801    UP000002320    UP000002282    UP000008711    UP000279307   

PRIDE

H9JX90    Q7KNS5    O44433   

Pfam

PF00013   KH_1

Interpro

IPR004087   KH_dom        + More
IPR004088   KH_dom_type_1       
IPR036612   KH_dom_type_1_sf       

SUPFAM

SSF54791   SSF54791       

Gene 3D

3.30.1370.10    

ProteinModelPortal

H9JX90   A0A2H1VAK4   S4PHQ0   A0A3S2LP05   A0A194QH17   I4DLI8   + More
A0A1E1WJJ5   A0A1E1W6A2   A0A212FKC8   A0A0N1PGU7   A0A1Y1LZM5   A0A1Y1LYC4   D6WQQ8   A0A1B6HPN6   A0A0C9RAP3   A0A310SID3   A0A0M9A1M2   E2A277   V9IDT1   A0A088AGZ4   A0A0L7QQ89   A0A154P6D9   A0A1B0GJS9   A0A1L8DGC0   A0A026W6X1   K7J211   U5EHW9   A0A195BD62   A0A158NW17   A0A195FT07   A0A195DI69   E2B8K4   A0A1B6D4L2   A0A151XHV3   F4WBR9   A0A182LSL3   A0A195C2Z1   A0A1J1HZJ2   A0A182NSS5   A0A182R0N6   A0A182KBG1   A0A0T6BHP8   A0A182IEQ5   A0A182RFY1   A0A182VY99   A0A2R7WP37   A0A182XKC3   A0A182KWS6   Q7PHL1   A0A182PVH5   A0A182V033   A0A182TXE3   B4QAU3   Q7KNS5   A0A3B0J2H4   A0A1Q3G0T6   A0A1W4V0U0   A0A1Q3G0F3   B4HMU2   A0A0B4KFT9   A0A1Q3G0E4   A0A0J9REZ2   A0A1Q3G0F7   A0A1Q3G0P3   B3MG75   A0A1Q3G0J6   B0X576   B4P7Z2   B3NNQ8   A0A3L8E2V9   O44433  

PDB

5EMO     E-value=1.79536e-37,     Score=391

KEGG

101736093    K14942 KH domain-containing, RNA-binding, signal transduction-associated protein 3 | (RefSeq) KH dom

GO

GO:0003723   GO:0048024   GO:0005634   GO:0016021   GO:0005737   GO:0003676   GO:0016788   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

Length:

355

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06491

outside

1  -  355

 

 

Pi

217.412957

Theta

181.398318

Tajima's D

1.083043

CLR

0.016798

CSRT

0.67681615919204

Interpretation

Uncertain