SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12207  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA014157
Annotation
PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX27_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.001
 

Sequence

CDS
ATGAAATTTGTAGAAGGGCACCCTGATTTAATCAAAACAATTCACGATGGAGAAGAAGTGGAGAATTTCTCTGAAGAATCTGATGAAGAAGTAGAGTACCAGCCATCAAAACAAAAGACCAAAAAGAAAGCTGATTTCAATCCAAAGTTTGAATTCATATCGTCTTTCGAAGAATATAATAAGAACACTTGGGATGACTTACACAAGTATGTACGTCGTAATGTAAAAAGGACATTGGATGAGAAGATTGAGAAACGTAGAGCGCATGTCAAAGTCCATGGAAATGCTGACTCTGTTGAGACTGATTCAGATGTCGAAGATAAAGATGGAGAAATCGATGAATTGGAAATATCCGATGATGAACTGAAGAAAGATCATATAAAAATTAAAGAAAAAAAAATTAGTAAAAAAAAGAAATTGGAACAGGAACTAAAAGAAGGTGAAGAAGGAACAAAAATTGAATATGACTCGGATTTCTTCGAGGAGCCACCTCCTTATGATGAAAACGCTTCGTTTTACAACATGAATCTATCCAGACCTCTCATGAAGGCTATTGGCTCTCTGAACTTTGTACACCCAACGCCCATACAAGCCGCAACCATTCCTATTGCACTTTTAGGTAAGGACGTATGCGCATGCGCCGCCACTGGCACTGGTAAGACGGCTGCATACATGCTGCCCATACTGGAGCGTCTCCTGTACAAGGCGAAAGGAGGGGACCGGATCACCAGGGTCCTGGTACTTGTGCCAACTAGAGAACTTGGTGCTCAGGTCCATGCAGTCACAAGACAACTGGCTCAGTTCTCATCGGTGTCTGTGGGTCTGTCTGTGGGAGGATTAGATGTTAAATATCAGGAAAGCGTGCTGCGTCAGAACCCCGACATAGTGATAGCGACGCCGGGTCGGCTCATCGATCACATACGGAACACACCCTCGTTCGGGCTCCACAGCATCGAGGTTCTGGTGCTGGACGAAGCTGACAGGATGCTGGATGAATACTTCGCGGAGCAGATGAAGGAGATCATCCGTCAGTGTTCCCCTAAACGTCAGACCATGCTGTTCTCGGCCACCATGAGCGAGGAAGTCAAGGACCTGGCGGCGGTTTCCTTGAAGAAACCCGTCAAATTGTTCGTGAACTCCAATAAGGAGGTGGCCTTCAACTTGAGGCAGGAGTTCGTGAGGATACGCAAGGAGCGCGAGTGCGACCGGGAGGCGATGCTGGCGGCGCTGGTGTGCCGCACGTTCCGCGACCGGACCGTCGTCTTCGTGCAGACCAAGCGCCAGGCGCACCGCCTCCACGTCATGCTGGGCATGCTGGGCGTCAAGGCGGCCGAGTTACACGGAGCCTTGAACCAGCCCCAGCGCTTGGACTCTCTGAAGCGTTTCCGGGAGCAACAGGCCGATGTGCTGGTGGCTACAGACGTGGCGGCCCGCGGCCTGGACATCCCGGGGGTCAACACCGTCATCAACTTCACGCTGCCGGCCACCTTAGAACATTATATACACAGGGTGGGTCGCACAGCCAGGGCGGGTCGCGCCGGGGTGTCCGTCTCGCTCGCCGGCGAGGGCGAGAGGAATCTGGTCAAATCGATAGTCAAACGCGCGTCCAAACCGGTCAAATCCAGACAAATACCGCCCGATATCGTCGCCAAATACAGGGAGAAACTGATCAAACTCGAACCGGAGATTGTCGCAATTCTCGACGAGGAATACGCCGAGAAGCAGATGAACAAGATGGAGAAGCAAACCGCCAAATTAGAGGTCGTCCTCAAGAAGGACGAAGCGCAGCCTGGACCTCAGCACGAGCCACAGCGGCAGCGGGACTGGTTCCAGACCCCGAAGCAGAAGAGAGAGGAGAAAGAAAGACTCGCACTCACGACACACGTCGGAAAAGATACGAAAAAAAAAGGCAAAGGAAAACGTAAACATGATGACGATTCCGATGATGACTCTGGTCCAAGCAAGAAGAAAAAGATTAGAAAGAACGCGCCCAAGGACTCCGCCGAAGAACGTGCGAAACGAGAAGTCGAGAAGGTCGCATTGCTGCAGTCTCGCTTGGCTAAGCGCAACAAGAAGCAGCGTCGTATACGCGCCGTCGGTGACGATGATGAGACACAAGCTCCAAGGAAAATCAACAAGCCCAAGAAGAAACAAACTAATTTCGCTGTGGACCTCACCGACACTTCAAAGAAAGCCACCAAGAGACTTAGATATGACGCCAATTTGGTACAAAAGGGTAAAAGCCCTAGGGGACCGAAGGGTAAGGGACCTCAAAAGGGTAAAGGTCAAAAGGGTAAAACGTTTGGAAAGCCCACAGCCCCAAAAAATAGTGGCAGAAGGAAAAAATAA
Protein
MKFVEGHPDLIKTIHDGEEVENFSEESDEEVEYQPSKQKTKKKADFNPKFEFISSFEEYNKNTWDDLHKYVRRNVKRTLDEKIEKRRAHVKVHGNADSVETDSDVEDKDGEIDELEISDDELKKDHIKIKEKKISKKKKLEQELKEGEEGTKIEYDSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVCACAATGTGKTAAYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFSSVSVGLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHRVGRTARAGRAGVSVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAKYREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVGKDTKKKGKGKRKHDDDSDDDSGPSKKKKIRKNAPKDSAEERAKREVEKVALLQSRLAKRNKKQRRIRAVGDDDETQAPRKINKPKKKQTNFAVDLTDTSKKATKRLRYDANLVQKGKSPRGPKGKGPQKGKGQKGKTFGKPTAPKNSGRRKK

Summary

Similarity
Belongs to the DEAD box helicase family.
EMBL
BABH01035738    BABH01035739    BABH01035740    RSAL01000042    RVE50799.1    NWSH01001737    + More
PCG70276.1    KQ461113    KPJ08915.1    GAIX01004950    JAA87610.1    AGBW02010795    OWR47703.1    KQ459053    KPJ04224.1    GEDC01020144    JAS17154.1    KK852513    KDR22247.1    NEVH01003767    PNF39977.1    LBMM01008257    KMQ89020.1    GL445323    EFN89832.1    NNAY01000337    OXU29097.1    KQ434839    KZC08017.1    GECZ01013332    JAS56437.1    KQ982080    KYQ60175.1    KQ981720    KYN37293.1    GL888398    EGI61675.1    KQ981145    KYN09136.1    CP012524    ALC40896.1    LJIG01016184    KRT81362.1    QOIP01000008    RLU19481.1    GDHF01010596    GDHF01004896    JAI41718.1    JAI47418.1    GL764298    EFZ17898.1    KK107109    EZA59085.1    JXUM01011718    JXUM01011719    KQ560337    KXJ82975.1    GL441701    EFN64393.1    CCAG010003471    CH916367    EDW00783.1    CH963850    EDW74683.1    CM000157    EDW89306.1    CH477655    EAT37719.1    KZ288186    PBC34740.1    CH954177    EDV59559.1    AE013599    BT004908    AAF59119.1    AAO49161.1    AHN55986.1    CH902619    EDV37860.1    KA648025    AFP62654.1    CH480816    EDW46893.1    CM000362    CM002911    EDX06150.1    KMY92221.1    CH933808    EDW10167.2    KQ976417    KYM89615.1    AF181659    AAD55444.1    KQ971351    EFA06493.1    GANO01001438    JAB58433.1    KQ435876    KOX70178.1    GBXI01001914    JAD12378.1    GDIP01148138    JAJ75264.1    GFDL01015106    JAV19939.1    LRGB01000243    KZS20240.1    GDIQ01159010    JAK92715.1    GDIQ01047664    JAN47073.1    GAMC01018276    JAB88279.1    DS231998    EDS31078.1    GDIQ01132182    JAL19544.1    CVRI01000006    CRK88228.1    GEBQ01030883    JAT09094.1    JXJN01000365    AXCN02002775    GDIQ01021278    JAN73459.1    GEBQ01024016    JAT15961.1    KQ977019    KYN06275.1    GBYB01013218    JAG82985.1    GEZM01057488    JAV72306.1    UFQT01000218    SSX21894.1    GL732534    EFX84337.1    ATLV01024292    KE525351    KFB51192.1    GGLE01006831    MBY10957.1    AXCM01003362    AAAB01008816    EAA05253.5    PNF39978.1    UFQT01001264    SSX29773.1    KK107085    EZA60045.1    RLU19947.1    GGFL01002237    MBW66415.1    GDHC01006492    JAQ12137.1    GBHO01016418    JAG27186.1    GBHO01016417    JAG27187.1    ACPB03005088    GDIP01091436    JAM12279.1    GFWV01019774    MAA44502.1    JRES01001589    KNC21698.1    GDKW01001815    JAI54780.1    GFTR01007972    JAW08454.1    GBGD01000585    JAC88304.1    APGK01054200    KB741247    KB631740    ENN72073.1    ERL85691.1   
Pfam
PF00270   DEAD        + More
PF00271   Helicase_C
PF04564   U-box
PF00400   WD40
Interpro
IPR011545   DEAD/DEAH_box_helicase_dom        + More
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR001650   Helicase_C       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014001   Helicase_ATP-bd       
IPR027417   P-loop_NTPase       
IPR001374   R3H_dom       
IPR036322   WD40_repeat_dom_sf       
IPR003613   Ubox_domain       
IPR017986   WD40_repeat_dom       
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR001680   WD40_repeat       
IPR013083   Znf_RING/FYVE/PHD       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
SUPFAM
SSF52540   SSF52540        + More
SSF50978   SSF50978       
Gene 3D
PDB
5IVL     E-value=2.88876e-46,     Score=470

Ontologies

Topology

Length:
782
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00701999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00024
outside
1  -  782
 
 

Population Genetic Test Statistics

Pi
24.936099
Theta
198.013498
Tajima's D
-1.313486
CLR
0.522268
CSRT
0.0841457927103645
Interpretation
Uncertain
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