Gene

KWMTBOMO12204

Pre Gene Modal

BGIBMGA014161

Annotation

vitellogenin_receptor_precursor_[Bombyx_mori]

Location

Bomo_Chr20(-):9333321-9345249      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 4.504

CDS

ATGAAGGTAGTTTTGTTAGCAATAGTTCTATGTACAACCTCGTGCGCGGGGCAGTTCGTTGACGAAATGCAAGTCTACGAGAAGGAGTGCCTGGGCGAGGATGTGTTTCCGTGCATGTCCGGGGGATGCATACAGCAGTCCCAGTACTGCGACGGAAAGGTGGACTGCGACGATGGAACCGACGAGAACTATTGCCTTGATCACAAGCCAGACGCTCAGTTCTGTAACGAGACCCACCAGTTCATGTGTCGGGACAGCAAGAAGTGCATCCCGAACCATTGGATCTGTAATAACGACATCGATTGCGACGACGGAAGTGATGAGCTAAATTGCACTTTGGTTCCTGTCGCTACTGGTAAATGCAAAGGTTTCCTGTGCGGCGATGGAAAATGTATCTCCAGTCTTTGGTTATGTGATGGAAGCTACGACTGCAAGGATAAGAGCGACGAGAATTCACCGGAGAACTGCCGTCACAGCCTCCTGTCCCACTCGATGCTAAGCGGATCGGATTGCCCGGAGTGGCTAGGAGGGAGGCGCCAATACAAATGCACGGACTCCTCGTTTTGCCTCCCGAGTGAAATGATGTGTGATGGGATGCAGGACTGCAAGGACGGCAGTGACGAGAGACCCTTCTGCGCCAACTGGCACACGATGTGCGCGAACCACACGTGCCTCGGTGACAAGGCCTCGTGTGTGCCGGACCGCGCCGGGCCCACGTGCGAGTGTCTCAACCACCTCAACCTGCGTCGGTACAATACCTCGACCGGGGCCTGCGACGACATCGACGAGTGCGCGCTGGCCCGCCCTCAGTGCTCCCACTACTGCGTCAACGCGGACGGCCATTTCACTTGTGAATGCGCCGACGGCTACTTCAAGGACGAACTTAAGTACTTGTGCTACGCTACCGGTCCCGAACCCCTGTTGTTCTACAGTACACGAAACGAAATTAAATATCTGAAAGTGAAGTCGAAGGAAGTGGTCACACTGGCGACTGGAATAAAAAAGGCTCACGGGGTCACATCGAACGGAATATACGTTTACTGGGTGGAAACAGCTGAAGGTCATCAAGCCATCGTCAAAGCTCACATAGACGACGTAGAAAACACTCGACAGGTTTGTCTTATGTCTTTTTAG

Protein

MKVVLLAIVLCTTSCAGQFVDEMQVYEKECLGEDVFPCMSGGCIQQSQYCDGKVDCDDGTDENYCLDHKPDAQFCNETHQFMCRDSKKCIPNHWICNNDIDCDDGSDELNCTLVPVATGKCKGFLCGDGKCISSLWLCDGSYDCKDKSDENSPENCRHSLLSHSMLSGSDCPEWLGGRRQYKCTDSSFCLPSEMMCDGMQDCKDGSDERPFCANWHTMCANHTCLGDKASCVPDRAGPTCECLNHLNLRRYNTSTGACDDIDECALARPQCSHYCVNADGHFTCECADGYFKDELKYLCYATGPEPLLFYSTRNEIKYLKVKSKEVVTLATGIKKAHGVTSNGIYVYWVETAEGHQAIVKAHIDDVENTRQVCLMSF

Uniprot

E2FLQ4   H2CLV8   K4MUW4   A0A2A4JFQ2   M1L4G2   A0A385LM65   + More
A0A2D0VP24   D9ZFI0   A0A194QLA3   A0A2W1BNV3   A0A1Z2RRL4   A0A0N1PFQ7   A0A385HW27   A0A2H1VW67   A0A212FEY0   A0A2S1XV31   A0A1L8E338   T1H951   A0A1B0CK10   A0A0P4ZPP0   A0A0L0C1S0   A0A0P5NI37   A0A0P5JXZ9   A0A0P5PFI2   A0A0P5LY81   A0A3P8NEL8   A0A0P5J3H5   A0A0P5GF13   A0A0P5G933   A0A0N8BJY3   A0A0P6H3Y9   A0A0N8DXE3   A0A3P8NEN0   A0A0P5RWQ5   A0A0P5FXD2   A0A0N8AUY6   A0A0P5IV54   A0A0P5RZH8   A0A0P5PN39   A0A3P9AXL2   A0A0P5DXE5   A0A3P9AXR5   A0A0P5GPI4   A0A0P5L7M2   A0A0P6E3V7   A0A0P5K179   A0A3P8NET0   A0A0P5J1F9   A0A0P5SE30   A0A0P4Z186   A0A0P5I355   A0A0N8CGL0   A0A0P6DFB9   A0A0P5CR20   A0A0P5Z3A9   A0A0P5EGI9   A0A0P5KZS4   A0A0P6E9J7   A0A0P5K6Y3   A0A0P5Q0G8   A0A0N8C0M5   Q2YI44   A0A0P6A4V9   A0A3Q3BHZ1   A0A3B4FMG6   A0A0N8BKC7   A0A1B1UZF6   A0A1B6KIS9   A0A0P5KAT0   A0A023FWP6   A0A3B4BJ67   A0A0P5AT73   A0A0P5LKJ2   A0A0P5FUT7   A0A0P6GYI7   A0A0P6B1N1   A0A0P5LPV1   A0A0P5KGH2   A0A0P4YFW2   A0A0T6B1R3   A0A1B6JXC2   Q1T728   A0A1A9V729   Q45VP9   A0A2J7QQP4   E9H6F1   A0A1B6I2G9   B3S2H0   A0A0P5EP04   A0A369SSL3   A0A3Q2LBF6   A0A1I8MWR0   I3KFZ1   I3KFY9   S7P8B8   I3KFZ0  

Pubmed

23515308    20955241    26354079    28756777    28605547    22118469    + More
29718485    26108605    25186727    16403020    25463417    17296498    21292972    18719581    30042472    19892987    25315136   

EMBL

HM172611    ADK94452.1    JN003583    AEJ88360.1    JQ809472    AFV32171.1    + More
NWSH01001747    PCG70260.1    KC181922    AGF33811.2    MH745217    AYA29178.2    KT899978    AOX13593.1    GU983858    ADK94033.1    KQ459053    KPJ04221.1    KZ150016    PZC74967.1    KY963162    ASA46482.1    KQ461113    KPJ08910.1    MG799569    AXY55007.1    ODYU01004767    SOQ44996.1    AGBW02008885    OWR52301.1    MF622539    AWJ95281.1    GFDF01000931    JAV13153.1    ACPB03011459    ACPB03011460    AJWK01015600    GDIP01209607    JAJ13795.1    JRES01000996    KNC26298.1    GDIQ01142056    JAL09670.1    GDIQ01197433    JAK54292.1    GDIQ01129311    JAL22415.1    GDIQ01163447    JAK88278.1    GDIQ01205984    JAK45741.1    GDIQ01241820    JAK09905.1    GDIQ01244480    JAK07245.1    GDIQ01191238    GDIQ01170395    GDIQ01033501    JAK81330.1    GDIQ01037393    JAN57344.1    GDIQ01251522    GDIQ01082524    JAN12213.1    GDIQ01113113    JAL38613.1    GDIQ01250068    JAK01657.1    GDIQ01240371    JAK11354.1    GDIQ01207378    JAK44347.1    GDIQ01099120    JAL52606.1    GDIQ01128015    JAL23711.1    GDIP01149466    JAJ73936.1    GDIQ01238676    JAK13049.1    GDIQ01198837    JAK52888.1    GDIQ01068184    JAN26553.1    GDIQ01191237    JAK60488.1    GDIQ01204480    JAK47245.1    GDIP01141118    JAL62596.1    GDIP01231612    JAI91789.1    GDIQ01225222    JAK26503.1    GDIP01133767    JAL69947.1    GDIQ01087271    JAN07466.1    GDIP01166911    JAJ56491.1    GDIP01049779    JAM53936.1    GDIP01146765    JAJ76637.1    GDIQ01202631    JAK49094.1    GDIQ01066790    JAN27947.1    GDIQ01189892    JAK61833.1    GDIQ01128014    JAL23712.1    GDIQ01126459    JAL25267.1    AM050637    CAJ19121.1    GDIP01034982    JAM68733.1    GDIQ01169243    JAK82482.1    KX428486    ANW09597.1    GEBQ01028624    JAT11353.1    GDIQ01186985    JAK64740.1    GBBL01001034    JAC26286.1    GDIP01194461    JAJ28941.1    GDIQ01168296    JAK83429.1    GDIP01143319    JAJ80083.1    GDIQ01026850    JAN67887.1    GDIP01021304    JAM82411.1    GDIQ01191239    JAK60486.1    GDIQ01191240    JAK60485.1    GDIP01231611    JAI91790.1    LJIG01016164    KRT81424.1    GECU01003850    JAT03857.1    AB255883    BAE93218.1    DQ103506    AAZ31260.3    NEVH01012083    PNF30911.1    GL732597    EFX72644.1    GECU01026651    JAS81055.1    DS985247    EDV23416.1    GDIP01145271    JAJ78131.1    NOWV01000001    RDD47933.1    AERX01019876    AERX01019877    AERX01019878    KE162005    EPQ06388.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000015103    UP000092461    + More
UP000037069    UP000265100    UP000265160    UP000264840    UP000261460    UP000261520    UP000078200    UP000235965    UP000000305    UP000009022    UP000253843    UP000002281    UP000095301    UP000005207   

PRIDE

E2FLQ4    Q45VP9   

Pfam

PF00057   Ldl_recept_a        + More
PF07645   EGF_CA
PF00058   Ldl_recept_b
PF12662   cEGF
PF00008   EGF

Interpro

IPR001881   EGF-like_Ca-bd_dom        + More
IPR000033   LDLR_classB_rpt       
IPR036055   LDL_receptor-like_sf       
IPR002172   LDrepeatLR_classA_rpt       
IPR018097   EGF_Ca-bd_CS       
IPR013032   EGF-like_CS       
IPR040093   LRAD1       
IPR011042   6-blade_b-propeller_TolB-like       
IPR000742   EGF-like_dom       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR023415   LDLR_class-A_CS       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR026823   cEGF       
IPR001190   SRCR       
IPR032931   VLDLR       

SUPFAM

SSF57424   SSF57424        + More
SSF57184   SSF57184       

Gene 3D

2.120.10.30     4.10.400.10    

CDD

cd00112  LDLa

ProteinModelPortal

E2FLQ4   H2CLV8   K4MUW4   A0A2A4JFQ2   M1L4G2   A0A385LM65   + More
A0A2D0VP24   D9ZFI0   A0A194QLA3   A0A2W1BNV3   A0A1Z2RRL4   A0A0N1PFQ7   A0A385HW27   A0A2H1VW67   A0A212FEY0   A0A2S1XV31   A0A1L8E338   T1H951   A0A1B0CK10   A0A0P4ZPP0   A0A0L0C1S0   A0A0P5NI37   A0A0P5JXZ9   A0A0P5PFI2   A0A0P5LY81   A0A3P8NEL8   A0A0P5J3H5   A0A0P5GF13   A0A0P5G933   A0A0N8BJY3   A0A0P6H3Y9   A0A0N8DXE3   A0A3P8NEN0   A0A0P5RWQ5   A0A0P5FXD2   A0A0N8AUY6   A0A0P5IV54   A0A0P5RZH8   A0A0P5PN39   A0A3P9AXL2   A0A0P5DXE5   A0A3P9AXR5   A0A0P5GPI4   A0A0P5L7M2   A0A0P6E3V7   A0A0P5K179   A0A3P8NET0   A0A0P5J1F9   A0A0P5SE30   A0A0P4Z186   A0A0P5I355   A0A0N8CGL0   A0A0P6DFB9   A0A0P5CR20   A0A0P5Z3A9   A0A0P5EGI9   A0A0P5KZS4   A0A0P6E9J7   A0A0P5K6Y3   A0A0P5Q0G8   A0A0N8C0M5   Q2YI44   A0A0P6A4V9   A0A3Q3BHZ1   A0A3B4FMG6   A0A0N8BKC7   A0A1B1UZF6   A0A1B6KIS9   A0A0P5KAT0   A0A023FWP6   A0A3B4BJ67   A0A0P5AT73   A0A0P5LKJ2   A0A0P5FUT7   A0A0P6GYI7   A0A0P6B1N1   A0A0P5LPV1   A0A0P5KGH2   A0A0P4YFW2   A0A0T6B1R3   A0A1B6JXC2   Q1T728   A0A1A9V729   Q45VP9   A0A2J7QQP4   E9H6F1   A0A1B6I2G9   B3S2H0   A0A0P5EP04   A0A369SSL3   A0A3Q2LBF6   A0A1I8MWR0   I3KFZ1   I3KFY9   S7P8B8   I3KFZ0  

PDB

3M0C     E-value=4.62014e-28,     Score=310

KEGG

692651    no KO assigned | (RefSeq) Vgr; vitellogenin receptor

GO

GO:0016021   GO:0005509   GO:0005739   GO:0005044   GO:0005515   GO:0006508   GO:0003676   GO:0016788   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

PANTHER

PTHR22722:SF5   PTHR24270:SF16  

SignalP

Position:   1 - 17,         Likelihood:  0.999619

 

 

Length:

377

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17005

Exp number, first 60 AAs:

0.16699

Total prob of N-in:

0.01188

outside

1  -  377

 

 

Pi

258.306646

Theta

157.559306

Tajima's D

2.265754

CLR

10.342689

CSRT

0.92010399480026

Interpretation

Uncertain