Gene

KWMTBOMO12196

Pre Gene Modal

BGIBMGA014176

Annotation

Transcriptional_repressor_scratch_1_[Papilio_xuthus]

Location

Bomo_Chr20(+):9233140-9234892      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Mitochondrial   Reliability : 1.475 Nuclear   Reliability : 2.027

CDS

ATGCACAAATGCAAGTATTGCGGGAAAGGCTTCGACAGACCCTGGGTGCTGAAGGGTCACCTGCGTCTCCACACCGGGGAGAGACCCTTCCCGTGCCCCCATCCGCTCTGCGGCAGAAGCTTTGCTGATCGTTCGAACCTCCGCGCCCACCAGCGCACCCGCGGTCACCACTCGTGGCAGTGGCGCTGCTCGGAGTGTGGGAAAGCTTTCAGCCAGAGCCGCTACCTCGAGCGCCACCGAGAGGACGCTTGTCGAAAATATAAGTACGTTGCGTTCGATGTTAAGTTCTAG

Protein

MHKCKYCGKGFDRPWVLKGHLRLHTGERPFPCPHPLCGRSFADRSNLRAHQRTRGHHSWQWRCSECGKAFSQSRYLERHREDACRKYKYVAFDVKF

Uniprot

H9JXB1   A0A194QL98   A0A2A4JE19   A0A0N1PH24   A0A3S2M3Y2   A0A212FEX1   + More
A0A2H1VE54   A0A2P8XUU1   A0A0L7QUQ6   A0A087ZPS1   A0A154P013   A0A0L7KTL9   A0A0N0BHQ0   A0A232F3A2   E0VJ65   K7IWA7   A0A0J7KU98   E2AXW5   A0A151INT4   A0A195EVR1   A0A026WJK6   A0A158NXN4   A0A195B0C3   E0W044   F4WYD0   A0A195EDX2   A0A2A3EJX0   E9J0P6   A0A0C9PKZ9   A0A1B6GZ14   A0A1B6KPN9   A0A0L0BVT2   A0A1A9V606   A0A1I8NWL1   A0A1I8MN07   A0A1A9Y9F2   A0A1A9W2R9   A0A1B0F9W1   W8BX65   A0A1B0C7M6   A0A0K8UEL3   A0A0A1X3X8   A0A034WS72   A0A1A9ZE94   Q299M7   B4G5F6   B4IUZ0   B3NZ50   B4NH31   A0A3B0K5P4   A0A0M4ELT3   B4I282   B4M3Y5   A0A1W4UKY0   Q9VE63   B4K917   B3LW90   B4QUD9   B4JF08   T1IA04   A0A1I8I524   A0A336KKG5   Q95VQ7   T1FNI8   A0A087T657   A0A3B4DCX3   A0A3B1IHX9   U3JT54   T1KC02   A0A1V9XC04   U3IW47   H2TXK9   T1IYF8   A0A087UIF5   M7B4X2   W5M2K9   O16139   A0A226NCM6   A0A3L7HE06   A0A0V1MD77   A0A1X8XKV4   Q6UCK0   W4XCK8   Q0Z887   R7THH0   A0A1L8FU78   A0A0V1HYJ2   U3J8I8   A0A0V1ISU4   A0A0V1JT95   A0A0N5DM67   A0A0P7XBU3   A0A315UUZ7   I3KUZ1   A0A0V1FJP0   A0A3B3QG56   A0A3B3X4F5   A0A087XI97   A0A3B3U8E0   A0A3P9P7Z5  

Pubmed

19121390    26354079    22118469    29403074    26227816    28648823    + More
20566863    20075255    20798317    24508170    30249741    21347285    21719571    21282665    26108605    25315136    24495485    25830018    25348373    15632085    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26392545    11466529    23254933    25329095    28327890    21551351    23624526    24621616    29704459    28436008    17287249    27762356    29703783    25186727    29240929   

EMBL

BABH01035714    KQ459053    KPJ04216.1    NWSH01001818    PCG70026.1    KQ461113    + More
KPJ08905.1    RSAL01000042    RVE50793.1    AGBW02008886    OWR52296.1    ODYU01002071    SOQ39118.1    PYGN01001311    PSN35781.1    KQ414731    KOC62358.1    KQ434782    KZC04588.1    JTDY01005799    KOB66612.1    KQ435746    KOX76538.1    NNAY01001168    OXU24907.1    DS235219    EEB13421.1    LBMM01003169    KMQ93866.1    GL443736    EFN61729.1    KQ976914    KYN07111.1    KQ981958    KYN31987.1    KK107168    QOIP01000001    EZA56180.1    RLU26775.1    ADTU01003248    KQ976692    KYM77740.1    DS235855    EEB19000.1    GL888440    EGI60782.1    KQ979074    KYN23002.1    KZ288227    PBC31774.1    GL767538    EFZ13544.1    GBYB01001678    JAG71445.1    GECZ01002099    JAS67670.1    GEBQ01026559    JAT13418.1    JRES01001362    KNC23349.1    CCAG010014901    GAMC01002698    JAC03858.1    JXJN01029245    JXJN01029246    GDHF01027220    JAI25094.1    GBXI01008939    JAD05353.1    GAKP01001790    JAC57162.1    CM000070    EAL27676.1    CH479179    EDW24822.1    CM000160    CH892279    EDW95918.1    EDX00204.1    CH954181    EDV48592.1    CH964272    EDW84528.1    OUUW01000013    SPP87992.1    CP012526    ALC46315.1    CH480820    EDW54639.1    CH940652    EDW59346.1    AE014297    BT022138    AAF55566.1    AAY51533.1    CH933806    EDW14430.1    CH902617    EDV42668.2    CM000364    EDX12439.1    CH916369    EDV93289.1    ACPB03005149    UFQS01000563    UFQT01000563    SSX04979.1    SSX25341.1    AF410865    AAL05565.1    AMQM01006851    KB097528    ESN95392.1    KK113612    KFM60596.1    AGTO01021867    CAEY01001956    MNPL01015858    OQR70882.1    JH431683    KK119951    KFM77144.1    KB572999    EMP27188.1    AHAT01021144    AHAT01021145    AF013243    AAB67715.1    AWGT02005927    OXB65020.1    RAZU01000234    RLQ64177.1    JYDO01000134    KRZ69539.1    LT821716    SLL96481.1    AY372519    AAQ74988.1    AAGJ04029712    DQ665364    ABG56163.1    AMQN01002676    KB309853    ELT93164.1    CM004477    OCT75152.1    JYDP01000017    KRZ15537.1    JYDU01000135    JYDS01000094    KRX91542.1    KRZ25858.1    JYDR01000111    JYDV01000053    KRY68457.1    KRZ37797.1    JARO02002006    KPP73854.1    NHOQ01002733    PWA15231.1    AERX01028453    JYDT01000076    KRY86178.1    AYCK01010451   

Proteomes

UP000005204    UP000053268    UP000218220    UP000053240    UP000283053    UP000007151    + More
UP000245037    UP000053825    UP000005203    UP000076502    UP000037510    UP000053105    UP000215335    UP000009046    UP000002358    UP000036403    UP000000311    UP000078542    UP000078541    UP000053097    UP000279307    UP000005205    UP000078540    UP000007755    UP000078492    UP000242457    UP000037069    UP000078200    UP000095300    UP000095301    UP000092443    UP000091820    UP000092444    UP000092460    UP000092445    UP000001819    UP000008744    UP000002282    UP000008711    UP000007798    UP000268350    UP000092553    UP000001292    UP000008792    UP000192221    UP000000803    UP000009192    UP000007801    UP000000304    UP000001070    UP000015103    UP000095280    UP000015101    UP000054359    UP000261440    UP000018467    UP000016665    UP000015104    UP000192247    UP000005226    UP000031443    UP000018468    UP000198419    UP000273346    UP000054843    UP000007110    UP000014760    UP000186698    UP000055024    UP000054805    UP000054815    UP000054632    UP000054826    UP000046395    UP000034805    UP000005207    UP000054995    UP000261540    UP000261480    UP000028760    UP000261500    UP000242638   

PRIDE

H9JXB1    Q9VE63   

Pfam

PF00096   zf-C2H2        + More
PF12259   Baculo_F

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR022048   Envelope_fusion-like       
IPR007110   Ig-like_dom       
IPR029794   SCRATCH1/2       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JXB1   A0A194QL98   A0A2A4JE19   A0A0N1PH24   A0A3S2M3Y2   A0A212FEX1   + More
A0A2H1VE54   A0A2P8XUU1   A0A0L7QUQ6   A0A087ZPS1   A0A154P013   A0A0L7KTL9   A0A0N0BHQ0   A0A232F3A2   E0VJ65   K7IWA7   A0A0J7KU98   E2AXW5   A0A151INT4   A0A195EVR1   A0A026WJK6   A0A158NXN4   A0A195B0C3   E0W044   F4WYD0   A0A195EDX2   A0A2A3EJX0   E9J0P6   A0A0C9PKZ9   A0A1B6GZ14   A0A1B6KPN9   A0A0L0BVT2   A0A1A9V606   A0A1I8NWL1   A0A1I8MN07   A0A1A9Y9F2   A0A1A9W2R9   A0A1B0F9W1   W8BX65   A0A1B0C7M6   A0A0K8UEL3   A0A0A1X3X8   A0A034WS72   A0A1A9ZE94   Q299M7   B4G5F6   B4IUZ0   B3NZ50   B4NH31   A0A3B0K5P4   A0A0M4ELT3   B4I282   B4M3Y5   A0A1W4UKY0   Q9VE63   B4K917   B3LW90   B4QUD9   B4JF08   T1IA04   A0A1I8I524   A0A336KKG5   Q95VQ7   T1FNI8   A0A087T657   A0A3B4DCX3   A0A3B1IHX9   U3JT54   T1KC02   A0A1V9XC04   U3IW47   H2TXK9   T1IYF8   A0A087UIF5   M7B4X2   W5M2K9   O16139   A0A226NCM6   A0A3L7HE06   A0A0V1MD77   A0A1X8XKV4   Q6UCK0   W4XCK8   Q0Z887   R7THH0   A0A1L8FU78   A0A0V1HYJ2   U3J8I8   A0A0V1ISU4   A0A0V1JT95   A0A0N5DM67   A0A0P7XBU3   A0A315UUZ7   I3KUZ1   A0A0V1FJP0   A0A3B3QG56   A0A3B3X4F5   A0A087XI97   A0A3B3U8E0   A0A3P9P7Z5  

PDB

3W5K     E-value=4.15117e-19,     Score=226

KEGG

101745226    no KO assigned | (RefSeq) neurofilament heavy polypeptide-like

GO

GO:0003676   GO:0016021   GO:0005634   GO:0043565   GO:0000122   GO:0001227   GO:2001222   GO:0043523   GO:2000177   GO:0043516   GO:0003700   GO:0003677   GO:0006355   GO:0046872   GO:0003824   GO:0016788   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

PANTHER

PTHR24388:SF60   PTHR24388:SF48  

Length:

96

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.65737

inside

1  -  96

 

 

Pi

348.30717

Theta

187.686928

Tajima's D

2.693039

CLR

0.152333

CSRT

0.96025198740063

Interpretation

Uncertain