Gene

KWMTBOMO12193  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014175

Annotation

PREDICTED:_cytochrome_c_oxidase_subunit_6C_[Papilio_xuthus]

Location

Bomo_Chr20(+):9148240-9151304      View in EpiBrowser

Full name

Cytochrome c oxidase subunit 6C      

Alternative Name

Cytochrome c oxidase polypeptide VIc

Location in the cell

Mitochondrial   Reliability : 2.09

CDS

ATGGCTGGCGAAAGTGCAGTATCGACAGCGAGCAAGCCTCAGATGCGAGGTCTCCTCAACGCCGTCATCAAACGTAACATTATTGTTGCTTTGGCTCTCTCGGGCGTCGCTGGTTTTACCTTCAAGCAGCTCATTGGTAATGAGCGCAAGAGAAAGTATGCTGAATTCTACAGAACCTATGATGCTGAAAAGGAATTTGAGGAGATGCGCAAGAAGGGTCTATTCCAATCCTGCTAA

Protein

MAGESAVSTASKPQMRGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC

Description

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Similarity

Belongs to the cytochrome c oxidase subunit 6c family.

Keywords

Complete proteome   Membrane   Mitochondrion   Mitochondrion inner membrane   Reference proteome   Transmembrane   Transmembrane helix  

Feature

chain  Cytochrome c oxidase subunit 6C

Uniprot

H9JXB0   A0A194QFM5   A0A194QRZ5   A0A2H1VE38   A0A3S2LNZ7   A0A0L7L0B2   + More
S4PTA9   A0A2W1BDE7   A0A212FLL0   A0A0N0PFL0   A6YPK4   A0A0P4VS79   R4FPA5   A0A224Y5G9   A0A069DNH6   T1H9S6   A0A0V0G3L6   B3MLL6   A0A224XTI8   B4LRA9   B4KI42   D6WQX4   A0A2R7VS90   B4JPK4   B4NLM4   U4UF63   D6X508   D6WQX1   N6SVK0   E9GAX6   A0A2P8XKR2   A0A0L0CC19   Q9VMS1   A0A067QN99   A0A151WPY7   A0A1A9WUC9   A0A195EDU3   A0A0K8TPJ2   J9JPL7   A0A1Q3FMI2   A0A162Q0L2   Q7YZE1   Q7YST2   A0A1B0GJJ8   A0A0P5ANU8   A0A1W4UWB4   U5EI08   A0A059NU15   B3N4U9   A0A023JP38   B4P073   A0A0P5CTU2   A0A1I8MD52   A0A0P5UDA2   A0A3B0JVM1   Q29M11   B4G6R0   A0A1L8E170   A0A1I8NQZ5   A0A059NU07   A0A2Y9MZ94   A0A182F1B8   A0A195EVT4   N6TR90   A0A0R3NYG0   A0A341D514   A0A1L8EF47   A0A2Y9NLC6   A0A2M3ZKN0   A0A2M4C535   A0A182Y615   A0A0A0RAJ5   A0A341CCJ5   A0A2Y9P5B6   A0A384BXW8   A0A3Q7WLQ3   A0A182PJR2   A0A1L8E145   F1S0P0   A0A2U4AI17   R4WIE5   A0A2M4A5J1   A0A1U7U542   Q7YRK7   A0A2Y9DA11   E2R0C4   A0A2Y9S650   A0A2M3YZL1   F1PKU9   A0A3Q7NZM5   A0A2U3ZFN8   A0A3Q7RVS2   H0Y0N4   A0A2U3WH54   A0A158NXP6   Q7YRK1   A0A182XZQ2   T1DGM9   W5JBC2   A0A2K5Z0E0  

Pubmed

19121390    26354079    26227816    23622113    28756777    22118469    + More
18207082    27129103    26334808    17994087    18057021    18362917    19820115    23537049    21292972    29403074    26108605    10731132    11514451    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24845553    26369729    14628919    17598752    22936249    17550304    25315136    15632085    25244985    24813606    23691247    16341006    21347285    20920257    23761445   

EMBL

BABH01035702    KQ459053    KPJ04214.1    KQ461181    KPJ07755.1    ODYU01002053    + More
ODYU01006054    SOQ39089.1    SOQ47570.1    RSAL01000042    RVE50790.1    JTDY01004016    KOB68709.1    GAIX01012358    JAA80202.1    KZ150117    PZC73249.1    AGBW02007739    OWR54635.1    LADJ01040879    KPJ21364.1    EF639015    ABR27900.1    GDKW01000631    JAI55964.1    ACPB03011978    GAHY01000979    JAA76531.1    GFTR01000625    JAW15801.1    GBGD01003673    JAC85216.1    ACPB03028413    GECL01003467    JAP02657.1    CH902620    EDV31765.1    KPU73614.1    GFTR01000571    JAW15855.1    CH940649    EDW64579.1    CH933807    EDW12335.1    KQ971351    EFA07586.1    KK854050    PTY10316.1    CH916372    EDV98834.1    CH964274    EDW85263.1    KB632159    ERL89236.1    KQ971381    EEZ97697.1    EFA07587.1    APGK01054728    KB741253    ENN71774.1    GL732537    EFX83335.1    PYGN01001835    PSN32598.1    JRES01000719    KNC28989.1    AE014134    AY029256    KX532000    AAF52241.3    AAK32965.1    AFH03560.1    AFH03561.1    ANY27810.1    KK853131    KDR10921.1    KQ982851    KYQ49863.1    KQ979074    KYN23014.1    GDAI01001291    JAI16312.1    ABLF02036252    GFDL01006311    JAV28734.1    LRGB01000389    KZS19297.1    AY307978    AAP88322.1    AY307966    AY307967    EF189554    EF189555    EF189556    EF189557    EF189558    EF189559    EF189560    EF189561    CM002910    AAP88310.1    ABM88332.1    ABM88333.1    ABM88334.1    ABM88335.1    ABM88336.1    ABM88337.1    ABM88338.1    ABM88339.1    KMY88280.1    AJWK01021859    AJWK01021860    GDIP01196207    JAJ27195.1    GANO01002814    JAB57057.1    KF863609    AHL43349.1    CH954177    EDV57851.1    KF863579    KF863580    KF863581    KF863582    KF863583    KF863584    KF863585    KF863586    KF863587    KF863588    KF863589    KF863590    KF863591    KF863592    KF863593    AHL43319.1    AHL43320.1    AHL43321.1    AHL43322.1    AHL43323.1    AHL43324.1    AHL43325.1    AHL43326.1    AHL43327.1    AHL43328.1    AHL43329.1    AHL43330.1    AHL43331.1    AHL43332.1    AHL43333.1    KF863595    KF863596    KF863597    KF863598    KF863599    KF863600    KF863601    KF863602    KF863603    KF863604    KF863605    KF863606    KF863607    KF863608    CM000157    AHL43335.1    AHL43336.1    AHL43337.1    AHL43338.1    AHL43339.1    AHL43340.1    AHL43341.1    AHL43342.1    AHL43343.1    AHL43344.1    AHL43345.1    AHL43346.1    AHL43347.1    AHL43348.1    EDW88938.1    GDIP01181756    JAJ41646.1    GDIP01131913    JAL71801.1    OUUW01000004    SPP79540.1    CH379060    EAL33884.1    CH479180    EDW29174.1    GFDF01001633    JAV12451.1    KF863594    AHL43334.1    KQ981958    KYN32004.1    APGK01054732    APGK01054733    KB631299    KB632372    ENN71775.1    ERL84226.1    ERL93749.1    KRT04301.1    GFDG01001459    JAV17340.1    GGFM01008301    MBW29052.1    GGFJ01011302    MBW60443.1    KF906254    AIU99750.1    GFDF01001634    JAV12450.1    AEMK02000022    AK417170    BAN20385.1    GGFK01002763    MBW36084.1    AY236503    AAEX03015848    GGFM01000935    MBW21686.1    AAEX03009973    AAQR03089135    ADTU01003275    AY236509    GAMD01002716    JAA98874.1    ADMH02001723    ETN61296.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000283053    UP000037510    UP000007151    + More
UP000015103    UP000007801    UP000008792    UP000009192    UP000007266    UP000001070    UP000007798    UP000030742    UP000019118    UP000000305    UP000245037    UP000037069    UP000000803    UP000027135    UP000075809    UP000091820    UP000078492    UP000007819    UP000076858    UP000092461    UP000192221    UP000008711    UP000002282    UP000095301    UP000268350    UP000001819    UP000008744    UP000095300    UP000248483    UP000069272    UP000078541    UP000252040    UP000076408    UP000261680    UP000291021    UP000286642    UP000075885    UP000008227    UP000245320    UP000189704    UP000248480    UP000002254    UP000248484    UP000286641    UP000245340    UP000286640    UP000005225    UP000005205    UP000000673    UP000233140   

PRIDE

H9JXB0    Q9VMS1    F1S0P0    Q7YRK7    E2R0C4    Q7YRK1    + More

Pfam

PF02937   COX6C

Interpro

IPR004204   COX6C        + More
IPR037169   Cytochrome_c_oxidase_VIc_sf       
IPR034884   Cytochrome_c_oxidase_VIc/VIIs       

SUPFAM

SSF81415   SSF81415       

Gene 3D

4.10.93.10    

CDD

cd00927  Cyt_c_Oxidase_VIc

ProteinModelPortal

H9JXB0   A0A194QFM5   A0A194QRZ5   A0A2H1VE38   A0A3S2LNZ7   A0A0L7L0B2   + More
S4PTA9   A0A2W1BDE7   A0A212FLL0   A0A0N0PFL0   A6YPK4   A0A0P4VS79   R4FPA5   A0A224Y5G9   A0A069DNH6   T1H9S6   A0A0V0G3L6   B3MLL6   A0A224XTI8   B4LRA9   B4KI42   D6WQX4   A0A2R7VS90   B4JPK4   B4NLM4   U4UF63   D6X508   D6WQX1   N6SVK0   E9GAX6   A0A2P8XKR2   A0A0L0CC19   Q9VMS1   A0A067QN99   A0A151WPY7   A0A1A9WUC9   A0A195EDU3   A0A0K8TPJ2   J9JPL7   A0A1Q3FMI2   A0A162Q0L2   Q7YZE1   Q7YST2   A0A1B0GJJ8   A0A0P5ANU8   A0A1W4UWB4   U5EI08   A0A059NU15   B3N4U9   A0A023JP38   B4P073   A0A0P5CTU2   A0A1I8MD52   A0A0P5UDA2   A0A3B0JVM1   Q29M11   B4G6R0   A0A1L8E170   A0A1I8NQZ5   A0A059NU07   A0A2Y9MZ94   A0A182F1B8   A0A195EVT4   N6TR90   A0A0R3NYG0   A0A341D514   A0A1L8EF47   A0A2Y9NLC6   A0A2M3ZKN0   A0A2M4C535   A0A182Y615   A0A0A0RAJ5   A0A341CCJ5   A0A2Y9P5B6   A0A384BXW8   A0A3Q7WLQ3   A0A182PJR2   A0A1L8E145   F1S0P0   A0A2U4AI17   R4WIE5   A0A2M4A5J1   A0A1U7U542   Q7YRK7   A0A2Y9DA11   E2R0C4   A0A2Y9S650   A0A2M3YZL1   F1PKU9   A0A3Q7NZM5   A0A2U3ZFN8   A0A3Q7RVS2   H0Y0N4   A0A2U3WH54   A0A158NXP6   Q7YRK1   A0A182XZQ2   T1DGM9   W5JBC2   A0A2K5Z0E0  

PDB

5Z62     E-value=1.10708e-10,     Score=153

KEGG

101746562    K02268 cytochrome c oxidase subunit 6c | (RefSeq) cytochrome c oxidase subunit 6C-like

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0004129   GO:0016021   GO:0005739   GO:0006123   GO:0005751   GO:0005743   GO:0005740   GO:0003824   GO:0016788   GO:0007165   GO:0005525   GO:0008033   GO:0003676   GO:0016787  

Subcellular location

Mitochondrion inner membrane  

Length:

78

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

18.1011

Exp number, first 60 AAs:

18.1011

Total prob of N-in:

0.38843

POSSIBLE N-term signal

sequence

outside

1  -  26

TMhelix

27  -  46

inside

47  -  78

 

 

Pi

124.982019

Theta

148.651639

Tajima's D

-1.033986

CLR

11.982964

CSRT

0.131943402829859

Interpretation

Uncertain