SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12192
Pre Gene Modal
BGIBMGA014174
Annotation
PREDICTED:_nuclear_receptor_coactivator_6-like_[Bombyx_mori]
Location
Bomo_Chr20(+):9123900-9143340      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.959
 

Sequence

CDS
ATGGCAGCGGACAGCGACGGGCCAGGATCGGCGGGCGGCGGCTGGTGCGGCGTGGTGGTGACTTGCGAGGGCGACCTGCGCGACCCTCGCTTCCCGACGCGCCTACGCCGTCTCCTGCGCGACCTGCGCACGCTGCTCGCCGACCCGCACCCACAGCACCTCAAAGTTAACAAGGTGGAGCCATGGAACTCGGTTCGCGTCACACTGTCGGTGCCACGAGCGGCCGCGGCTCGGCTCCGGGCGCTGGCGATGGGAGGAGCCCCCCAGCTGAGGGCGCTCGGAATCCTCTCCGTGCAGCTTGACGGCGACGCTGCCGTCTCGTTGCGGCTGCAGCACGGGGCCGAGCTGACCATAAGCGCCGACGGTGATGACGCGAGCTCATCAAGATCGCAATCGAACGTGGAGTTGTTAGCTGGCTTAGAGGGGATAGGCCGGCTGATGGAGGGGGCCGACGGAGCGTCCACCTCGGCTGACGCCACTCCTTCATCTTCCACTCAGAACAGGGACAACTTCAAATCCCCCAACACTGTCTGTCCAATGGATGGGAAGATACCGCAGAACATTCCCACGCCGACCACAGACAGATGTGAATTCCCCTTCGGCAGTATGACTCAAGCGAGAGTGATACACCGGAAAGAAAATACTTTAGGTTTAGGTGGTTCATCAAGTAGCATAAGGCCGTCTTCTGATGCCATGTTCGCGAGGCCGTCGACATCATCGTTCACAGGGCCGCCCCCGCCCTACCCCGCGCCGCCCCCTCCGGCGCCTCCCTCCACGCCTACGCCCCCCACTGTCGCGATGTCTTCGCCTCTTCTCGTAAACTTATTGCAGAACGACGCGCCCACCCCTCAACCTAGACCCAAACCTCCGCAGCACCCCGCTAAACTAGATCGGCTTGAAGACGGACAGGTGGAATTAGCTGTCGGTCGTGCGCCTTTTGAGTACCGCGGGCCCCGCACCCCGGCACCGCTCCGCATGCCGCCCTCCCCGGCGCCTTCTTCGCCGTCCCCGGCCCCGTCCCCGACACCACGTCCGGCCCCTAGGCCCGCACCTTACATCCGGCGAGCCTTTGCCCCGGCAAGGCCCAGTCTTCCGCCGCCACCTCCCACTGTGACGTATCGTACAGTGCCAGCGCCGAATGCAACGGTCGTGTCCCGGACTCGATTTCAGCCGGGCACGTACTCGACCGAGTCGTTTGGTCCTCCGCCCCCGTATGGCGGCCGGCAAGCGACGCCACGACCCCCGCCGCCTCGTGCTGCCCCGCCCCCGACACCGCCGCCACAGTCTTCGAGGGTCACTCCCGAAGACCTGCAAGCTCTACTGCCTCCGCCCACCACATCTATGGATCAAAAGACTCAGTCCAGTTTTCAGGAATTCCAGAGGTATCAACAGCAGTACATCGCTCTGCAGAGAGCAAATTCTCGTAGCGCGGCCGGCTCCACAACGAGCGGGTCGGAGTGGGGTGAACCGTACCGAGACTCGCTCTCAGGGCTGCAGCTACCAGAGCTACCCGACACGGATCTGGATCAGTTGCTGCCGACGTTGGGTGCCGATCTGAACTTGGATGATCCCGCATTATCGGCGATCTCGGACTTGGACGCGGCCGGCAAGCTCGACCTGCTGTACGACGGCGGTGCTGCTCCTACGCCCGACTCGCTGCTTCACGAGATCACTGGGCAGTTTCCACCCCAGGTCAACGGACCCTACTCAGAACCCCCTACGTCCTCCGCAAGTGAAGTGCCTTCTAAATCAGAATCTTTCGACAGTGAAACGACTTTTATGCCACCCCCTCCTGTGCCGCAAACGTCTAAATATCAAACAAATCATCACCCCCCTTTCAAATCACCGCCGACCTCGTACGCGTCGCCCGTGTCGTGTAACTCTGAATTGGTGCGGACGGTGTCGAGTCAAGCGAATTCGAATCACGGGCAGATGAGTCAAAATCAGCATCCAACGAATCAAATGTCGCCTGGTCACACGTCGATGCCGCCGCCGATGCGGTTGCCGATGAGGACGACGTCGGTGAGCACCGCGACGGTCGGCTCGCAGGCCACCGCGCAGGAGATCGAAGAACAAAACAAGCAGTACCTGATCAAAACGCTCATGCGAGACGACGACTCGCCTCCTCCAGCGCCGCCACCTCCACCTCCGTCTGAGCCCGAGAAAAAAGTCGACGAGATCACTGTCGTGCAGTGTAAAATCAAAGAAAACTCTACAGATACGATCCCGGAAATATTTGGTATCGCGAAGTCGATACCCGAAGATGACGGGAAGAAGGATGATGAAGCGAGAAAAAATAAGTTGACGAAAAAGGATCGTGATGAGAAACTAGTCGCTCAAAAGGGCGGGAAGCCTCGCGTCACAGGGGCGAAAGAGAAACCCGCCATCTTGAAGGATAAAATAATCCGCGACGTTAAGTCCACCAAAGTTGCCTTACCTAGGCCCGCGCTCACGAAGCCCGCCACCCCCACCAGCGACGCGCCCAAGTCGCCGCCCGGAGAGAAGGAGTCCATCAAGCTCAGGCTTACGAAGACGAAGCTCGACAAGAACGAGCCTGTCGTCCAACCGGTCTACAAGGCGGACGTCAGCTTCGTCAATCAACAGAAGGGCGAGAAGTCTGACGGTGAGCTCAGAGTGCCGCCGCTGCATATAAGCCTAAAGGGAAGAAATTCTGCTGTCATAAAGAACTCCAAAAAGGAGAAAAAGAAATTCAGTCCGGGCGATTTGCACACAAAGAAAGTTAAAATCAAGAAAGCGCTAGAAGACGAAAAAGCGCACAGGCGGGAGTCGGACGAGTGCATCGCTTCGAAGTCTGGCGATGGTGCCGAAAACAAGACTGATGAGTATTTAAACGCGAAAGGCATTAAGCTTAACAACCACTACGACGGCGACGCGGTCAAAACCGAAATAACGGGGGACAATAACGTCGTGTACCGAATGAAGACTATATCGAAGAACGCTCACATAGTCACCAAGTCCCACGACTACAAACTCAACAACAAGGTCCAGATGATGGACTTGAAAGTTAAAAAGAAATTCAAAATACTCAGCGAGGATAAAACAGAAAAAGACAAAGATTGGCGGAACAACTTATTAGAGAAAGAAGGGAAGTATGCACAGAATGAGGGTTACAGAGAGACTCCTAACAATCATGAAGTAAAAAAGAAGTTACCCAGCGGGAAGGATGGTGTCAAATGTGATAGGTCCAGTGACGGGAAGACGGTGCAATCGGACGCAGAATGTGAGAAAGGTGCTAGTGACAAGTGTAAAGTGGAATGGACGCTAATCGAGGGTGAGAACAGGACTTCTGAAAGTGACAATAAGTTAAAAAGGACACTAACCGAAAGTGCAATTACCTCTCCTAATGGACTCCTTACTTCTGAGAAGAAGAGGAAAACCAGTCATAGTTCCTTATCAGATCCGCCGGGCTCCACCAACACGGGCACCGTCAGCGCTGGCTCTTCTCCCGGCGGCTCCTCCCCGCGGCGCAGGGAGCGGCCCAAGGACAAGTCCTACTGCAAGCTCGTCGCCGAGCGAGCTGCCGACAAACTGTCCGCGCGCTCGCCTTCCTCGCAGGCCCAGGGGGAGGATTCGGGGATCGAGTCCATGGACGCGCTCTCGGAGAAGTCCCCCAACCAGGCCAGCCAATCCCCGCCCGGACCCCAGCGCAAGGAACACCTCGACATGCCGCGCTCCACCAGCCCCGCCTCCGTGCAGAGGATCATCGGCGTCATCGAGCCCGCGCCCGCAGCGGACGACCTGCTCGTGCCGCTCTACGACCCGGGGGACATCGAGGCCGAGCTCGCCAAGATGCACGCCGGGCGAGTTAACGGCGACCGGCCGCTGCAACATGAACACACCAAAGAACGGGAACCGACGCCCATCCTGAGGGAAAGAGACGAACCCTCCGCCTCCGACGAACCGCACTCGAAACCCGAACTCGACGGCGGCGGGGACACCAACACTCCCTCCTCTGTCCCCGACGACCCGGGCGGTGCCAAGAAGGAGCCAGACTTCGATCCGCTGCCCAGTAGAATGTCGCCGCCCCTTTATACGTATTCGAATCAAGAAAAAGGTGATCCAGAATCTAACGTCAAGGACGAGAAACCTGGAACCGAAAGTCGCGAGACGAGGCCCGGGGGCGATGAAAAACGGGAGACGAAAATCGAAAGGCTACCATTGAAAGCTGACTTTCCCGATAAGAGTTTGCTGGAGCAGTTGCTGATAGAGATTCCGACTCCGGACTATGTCGGGAAGAGGCCCGAGTCGCCATCTCCGTCGGCACTCGAGCGCGTGGCGAGAACCAGCGTCCGCACCCGCGCCAGCAGCAAGCTCAACAGCCCCGCCGAGCCGCGCCTCTCGCCCGTCAGAACCAAGGCGGATCGAGCTGACTCCCCCGCCCTGCAGCCGAGGAACTGTCTGCGCGCCGTCGCCGACGACAAGATCAGTCCGCGCAACGCCGCCCCCGCACCCCGGCCCCCGGCCCCCGTCGCGCCCGTCGTCAAGCGGAAGCGCCGCGAGTCGGAAAGTTCCGGTGCCTCCACCCTCAGTTGCGAGGAGGGCCTCTCGCCCGCCGCTCGACCGAAAAAGAAACCGCGCCGAACTGATTTAAAACCGGTCAATCCGACGGGAGCGCCCCTCAAAACCAAGAAGGATTCGGACAGCGACAGCGACGAGCCTCTAATTTGTAAAGTGCGAGGGAAACCGACGAAGGGGCACGCGGCGCTCTGTGAGGCAGGGCATGACCGCGCCGGCCGCCCCCGCCCCGGCCCCCGCGCCCGCCGCGCTGCCCGCGTCCGCCCCCGCCGCCCCGCCCGCCGCGGCGCCGGCTCCAGCCCCCCCTGTACCCGCTCCCGTCAGAAGAAAAACCAGAAGTGCCGCCGAACGTGCCAATGGAGTCATCTTCTAAACTCGAACACCAACTTGTTGTTCAGCGGGCGAAGGCCTGGCGGGCGCGGTGCGGCGGCGGCGCCTGTCCCGGGACGGCAAGTGACGGCGGTCGGGCGCGGAGCCCGGGCCCTCCCCGCCGCGCCTGATGCTGTGTCCGCTGCTGGACTGACGCTGGACCGTCCGCTAACAGTACACTATACACGCAAATCACACAGATATGAATAG
Protein
MAADSDGPGSAGGGWCGVVVTCEGDLRDPRFPTRLRRLLRDLRTLLADPHPQHLKVNKVEPWNSVRVTLSVPRAAAARLRALAMGGAPQLRALGILSVQLDGDAAVSLRLQHGAELTISADGDDASSSRSQSNVELLAGLEGIGRLMEGADGASTSADATPSSSTQNRDNFKSPNTVCPMDGKIPQNIPTPTTDRCEFPFGSMTQARVIHRKENTLGLGGSSSSIRPSSDAMFARPSTSSFTGPPPPYPAPPPPAPPSTPTPPTVAMSSPLLVNLLQNDAPTPQPRPKPPQHPAKLDRLEDGQVELAVGRAPFEYRGPRTPAPLRMPPSPAPSSPSPAPSPTPRPAPRPAPYIRRAFAPARPSLPPPPPTVTYRTVPAPNATVVSRTRFQPGTYSTESFGPPPPYGGRQATPRPPPPRAAPPPTPPPQSSRVTPEDLQALLPPPTTSMDQKTQSSFQEFQRYQQQYIALQRANSRSAAGSTTSGSEWGEPYRDSLSGLQLPELPDTDLDQLLPTLGADLNLDDPALSAISDLDAAGKLDLLYDGGAAPTPDSLLHEITGQFPPQVNGPYSEPPTSSASEVPSKSESFDSETTFMPPPPVPQTSKYQTNHHPPFKSPPTSYASPVSCNSELVRTVSSQANSNHGQMSQNQHPTNQMSPGHTSMPPPMRLPMRTTSVSTATVGSQATAQEIEEQNKQYLIKTLMRDDDSPPPAPPPPPPSEPEKKVDEITVVQCKIKENSTDTIPEIFGIAKSIPEDDGKKDDEARKNKLTKKDRDEKLVAQKGGKPRVTGAKEKPAILKDKIIRDVKSTKVALPRPALTKPATPTSDAPKSPPGEKESIKLRLTKTKLDKNEPVVQPVYKADVSFVNQQKGEKSDGELRVPPLHISLKGRNSAVIKNSKKEKKKFSPGDLHTKKVKIKKALEDEKAHRRESDECIASKSGDGAENKTDEYLNAKGIKLNNHYDGDAVKTEITGDNNVVYRMKTISKNAHIVTKSHDYKLNNKVQMMDLKVKKKFKILSEDKTEKDKDWRNNLLEKEGKYAQNEGYRETPNNHEVKKKLPSGKDGVKCDRSSDGKTVQSDAECEKGASDKCKVEWTLIEGENRTSESDNKLKRTLTESAITSPNGLLTSEKKRKTSHSSLSDPPGSTNTGTVSAGSSPGGSSPRRRERPKDKSYCKLVAERAADKLSARSPSSQAQGEDSGIESMDALSEKSPNQASQSPPGPQRKEHLDMPRSTSPASVQRIIGVIEPAPAADDLLVPLYDPGDIEAELAKMHAGRVNGDRPLQHEHTKEREPTPILRERDEPSASDEPHSKPELDGGGDTNTPSSVPDDPGGAKKEPDFDPLPSRMSPPLYTYSNQEKGDPESNVKDEKPGTESRETRPGGDEKRETKIERLPLKADFPDKSLLEQLLIEIPTPDYVGKRPESPSPSALERVARTSVRTRASSKLNSPAEPRLSPVRTKADRADSPALQPRNCLRAVADDKISPRNAAPAPRPPAPVAPVVKRKRRESESSGASTLSCEEGLSPAARPKKKPRRTDLKPVNPTGAPLKTKKDSDSDSDEPLICKVRGKPTKGHAALCEAGHDRAGRPRPGPRARRAARVRPRRPARRGAGSSPPCTRSRQKKNQKCRRTCQWSHLLNSNTNLLFSGRRPGGRGAAAAPVPGRQVTAVGRGARALPAAPDAVSAAGLTLDRPLTVHYTRKSHRYE

Summary

Uniprot
A0A194QQX9   A0A194QF92   A0A212FLM6  
Pubmed
26354079    22118469   
EMBL
KQ461181    KPJ07754.1    KQ459053    KPJ04213.1    AGBW02007739    OWR54636.1    + More
Proteomes
UP000053240    UP000053268    UP000007151   
Pfam
PF13820   Nucleic_acid_bd
Interpro
IPR032715   NCOA6_nucleic_acid-bd        + More
IPR026638   NCOA6       
ProteinModelPortal
A0A194QQX9   A0A194QF92   A0A212FLM6  

Ontologies

KEGG
101738211    no KO assigned | (RefSeq) nuclear receptor coactivator 6-like
GO
GO:0003713   GO:0005634  
PANTHER
PTHR15690  

Topology

Length:
1704
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00702999999999999
Exp number, first 60 AAs:
0.00484
Total prob of N-in:
0.00031
outside
1  -  1704
 
 

Population Genetic Test Statistics

Pi
190.435559
Theta
166.063236
Tajima's D
-0.684768
CLR
104.919694
CSRT
0.196690165491725
Interpretation
Uncertain
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