SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12189  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004231
Annotation
cytochrome_c_oxidase_polypeptide_Vb_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.952
 

Sequence

CDS
ATGGCTTCCTTATGTAGACAAATTCTTAGAGCAAATGCATTTAGAAGTGTTATTTTACCCACAGCCAGGCGGGGATATGCCGACAAAATGATGCCTGATCCCTTGGAACATGCCACTGGCTTGGAAAGGAAGGAACTCCTGGCCCTTCAGGCCGGCAATGATGACCCCTTCAACATGAAGGTAGTGAAGAAGTCAGCAGGAACCCGTGAAAACCCAACTCTGGTACCTTCCTGCTTTGATGCTCGTATTGTTGGATGCATTTGTGAAGAACACGCTACAGCCATCACCTGGCTTTGGTTACACAAGGACCAACCGCGCCGTTGCGAGTGTGGACATTGGTACAAATTGATTGAGAAGCCACTCCTTTAA
Protein
MASLCRQILRANAFRSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHATAITWLWLHKDQPRRCECGHWYKLIEKPLL

Summary

EMBL
DQ443282    ABF51371.1    ODYU01002435    SOQ39922.1    KZ150117    PZC73254.1    + More
GBRD01016264    JAG49562.1    NWSH01003587    PCG66079.1    GDQN01011013    JAT80041.1    AK401534    KQ459053    BAM18156.1    KPJ04209.1    GAIX01003864    JAA88696.1    AK402620    BAM19242.1    BABH01040255    AGBW02011414    OWR46699.1    GFDG01000715    JAV18084.1    KA647340    AFP61969.1    GFDG01000705    JAV18094.1    GEZM01001057    JAV98193.1    APCN01000664    AAAB01008944    EAA10211.2    CH933807    EDW13379.1    CH940649    EDW63326.1    CH902620    EDV32181.1    AXCN02000614    CP012523    ALC38412.1    JRES01000933    KNC27155.1    CH479184    EDW37155.1    CH379058    CH675624    EAL34363.1    EDY71803.1    OUUW01000006    SPP82346.1    UFQS01000101    UFQT01000101    SSW99611.1    SSX19991.1    GDAI01001383    JAI16220.1    KF863527    AHL43267.1    CH954177    EDV59091.1    AXCM01006241    GGFM01001181    MBW21932.1    GGFK01003221    MBW36542.1    ADMH02001658    ETN61530.1    CH480818    EDW51869.1    EF189527    CM000361    CM002910    ABM88305.1    EDX03974.1    KMY88545.1    AE014134    AY070965    AAF52402.1    AAL48587.1    AHN54193.1    EZ422596    ADD18872.1    JXJN01023588    EZ419949    ACZ28304.1    BT004475    AAO42639.1    CH963857    EDW76188.1    GDHF01004741    JAI47573.1    CH916372    EDV99427.1    EF189521    EF189522    EF189523    EF189524    EF189525    EF189526    EF189528    EF189529    ABM88299.1    ABM88300.1    ABM88301.1    ABM88302.1    ABM88303.1    ABM88304.1    ABM88306.1    KF863516    KF863517    KF863518    KF863519    KF863520    KF863521    KF863522    KF863523    KF863524    KF863525    KF863526    KF863528    KF863529    KF863530    AHL43256.1    AHL43257.1    AHL43258.1    AHL43259.1    AHL43260.1    AHL43261.1    AHL43262.1    AHL43263.1    AHL43264.1    AHL43265.1    AHL43266.1    AHL43268.1    AHL43269.1    AHL43270.1    AY231962    AY232045    KF863531    KF863532    KF863533    KF863534    KF863535    KF863536    KF863537    KF863538    KF863539    KF863540    KF863541    KF863542    KF863543    KF863544    CM000157    AAR10068.1    AHL43271.1    AHL43272.1    AHL43273.1    AHL43274.1    AHL43275.1    AHL43276.1    AHL43277.1    AHL43278.1    AHL43279.1    AHL43280.1    AHL43281.1    AHL43282.1    AHL43283.1    AHL43284.1    EDW87878.1    GAKP01000157    JAC58795.1    GAMC01018268    JAB88287.1    GALA01000559    JAA94293.1    BT127004    AEE61966.1    KY287666    ATN38936.1    KF863545    AHL43285.1    CH477960    CH477527    EAT34781.1    EAT39520.1    JXUM01046583    GAPW01006132    KQ561483    JAC07466.1    KXJ78435.1    GFDF01001775    JAV12309.1    GANO01004033    JAB55838.1    GFDF01001774    JAV12310.1    LJIG01022515    KRT80170.1    APGK01025701    APGK01025702    KB740600    ENN80116.1    CVRI01000063    CRL04250.1    GFDL01006652    JAV28393.1    DS231888    EDS43576.1    KB631982    ERL87591.1    ATLV01014596    KE524975    KFB39181.1    GL732583    EFX74365.1    AJVK01026797    GDIQ01007107    JAN87630.1    LRGB01000868    KZS15614.1    GEDC01009580    JAS27718.1    GDIQ01127606    JAL24120.1    GFWV01022454    MAA47181.1    GDIQ01128705    JAL23021.1    GDIQ01097765    JAL53961.1    JH431644    GDIQ01239968    JAK11757.1    JQ952564    AFV69126.1    GDIQ01188683    JAK63042.1    GDIQ01183785    GDIP01088318    JAK67940.1    JAM15397.1    GANO01004032    JAB55839.1    GDIQ01161193    JAK90532.1    GDIQ01050737    JAN44000.1    GDIQ01249267    JAK02458.1    GDIP01139957    JAL63757.1   
Pfam
PF01215   COX5B        + More
PF15797   DUF4706
PF01251   Ribosomal_S7e
Interpro
IPR002124   Cyt_c_oxidase_su5b        + More
IPR036972   Cyt_c_oxidase_su5b_sf       
IPR031600   DUF4706       
IPR000554   Ribosomal_S7e       
Gene 3D
PDB
2Y69     E-value=4.28414e-20,     Score=234

Ontologies

Topology

Length:
122
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00405
Exp number, first 60 AAs:
0.00098
Total prob of N-in:
0.26195
outside
1  -  122
 
 

Population Genetic Test Statistics

Pi
178.333097
Theta
185.307031
Tajima's D
0.11038
CLR
0.297746
CSRT
0.3964801759912
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 MMPDPLEHATGLER 100.00 4e-09
28556443 ENPTLVPSCFDAR 100.00 7e-07
28556443 ELLALQAGNDDPFNMK 100.00 7e-07
28556443 ELLALQAGNDDPFNMK 100.00 3e-06
28556443 QAGNDDPFNMK 100.00 3e-06
28556443 MLDFNNINGLQLTQPATQGGYGGR 100.00 3e-06
28556443 MMPDPLEHATGLER 100.00 4e-04
28556443 MMPDPLEHATGLER 100.00 4e-04
28556443 MMPDPLEHATGLER 100.00 4e-04
28556443 MMPDPLEHATGLER 100.00 4e-04
28556443 MMPDPLEHATGLER 100.00 4e-04
28556443 LIEKPLL 100.00 4e-04
28556443 KELLALQAGNDDPFNMK 100.00 4e-04
28556443 ELLALQAGNDDPFNMK 100.00 0.002
28556443 LIEKPLL 100.00 0.002
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