Silkworm Genome Informatics Database

Gene

KWMTBOMO12184

Pre Gene Modal

BGIBMGA014450

Annotation

PREDICTED:_uncharacterized_protein_LOC101742687_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr20(-):8921617-8943339 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 3.671

CDS

ATGCTTATTGGCGATAGAAATACGCCGGTATCATACTTAGAGGCTTGCCCTGAGGAGTTGAAGAAAATATGTCAAGTTATGCTGGTCCTCCTCCTCGCGTCGTTTTCCTCATTACTGAGGGTCGTGACTCCCCCGCTGCATCAGTTTCTCCCGTACGACTTCCCTCCATCTGCTGCGATCCTTAGCTTCATGAAGGGCATTGTGGATTTGATGTTTAGAGAAAATCGTATTTGGTCCGACCATCTCGTGTTTCACCTTCGCAACATCCGCTGGGAGAGTCCAAGGTTCCTGTCCAAATCGTTCCTGGCCTTCGTTACATTCAACCTCATCAACTACTCGTTGTTGGCAGCCGAGGTCCTTACAACGAACATCGCTGATACTTCTGCCGAGAAGAGGACCTTCTACCAGCACATATTCAATGGTTGTTACGCCGTTCTACTCTTCATCGTTGTCGTGTTCTTCCTCATCTACGGAGTTGAAGTATTCTTTAAGCTCCGCGGTGAGTTCCTGAAGGAGACCAAAGTATGCACCATAATATCGCCCCGTCCCGGAACCTCAACCGACGGAGATGAAGCCCAGGATACGCTTGTCACTAAACAGGGAATTCAAACGGATTTGCTGGACGGAGACGGAACGGTGGACCCTCGGTCCGTGGACCTGTCGCAGCTGCACCAGTCGCGCGTGGGCCTGATCAGCCTCGCGCTGATGCTCATACTGATCGTCTGCTTCCTGGCTTCTGAAACCCTAAGCGAATTCTGGAAGACTAAGGTGCCGGTGGTGTCCCGCAACTGGCACGACCTGGTGTTCCGGCTCGCCGAGATCGGGGTCGCAGTATGGTTCCCGTGCGCGCTGTGGAACTCGATGGCGCCCGAGCGGCTCTGGCTCCTGAACCCGCGCCGGCTGCTCGCCAGGCAACTGGACGACGCCAAGCTCGCCGACCTGCTCGCGCAGCACCACCACGATGCCAAGACGTTGGCCGACCTCAGCCAACTGGGCTGGCGCCAGAAAGCATGGTACTTTCTCGAGTTGGCCAAATATTGGATCGTTTGGAGGTTCGCTCTTACTGTCTTTTTCAAACCTCTTCCTTTGCCTGTAAACGGGAAAGAGACACAAAACTCGGACGCTGCTAATGCGGTTGGCTCGAACACAAATTCGAACGTGGAGAGAGACTCGCTCGTGGACAGCGTCGGGTCGAGCCGCGACTGCTGGATTTGCTACGACAGCTCCCGGGCGGAGCCCCTCATCAGGCCGTGTCGCTGCACAGGCGACGTGTCCGCCGTGCATCATGACTGCCTGAGCAGGTGGCTCGTTGAGAGTGCCGCCTCGCCTGACGGCTTGAAGTGCAAAGTCTGCAACACTCCCTACATCGTCCAGGAGACCAATCGAGTGGAGTGGGAGCGCGGGTTCACGTGGTCGCACTGGGCGGGCACCGCGGCCGCCGTCACCGCGCTCACCGGCGCCGCGGCGGGCGCCTGGGCCCTCGCGCAGCTCTACCCCTCCTCCCTCGTACGCGTGCTCGCCGCCGGCGCCGCGCTGCTCGTCTGCTACGTCGCGCTCAGATTCCTGGGCACGAACACGGTGTCGGCGTACCACCGGGCCCGCGTCTACGGCCTGAAGATCCTGACGGAGCCCTTCGCCGACGTCCAGGACTCGGAGCAGGGTCAGCTGTCGACCATCAGCAGGACGGTGACCGTCGAGATCGCACCGAAGGACGTCCTCGACCAAGCGCTCAAGGGCGAAGCGAAATAG

Protein

MLIGDRNTPVSYLEACPEELKKICQVMLVLLLASFSSLLRVVTPPLHQFLPYDFPPSAAILSFMKGIVDLMFRENRIWSDHLVFHLRNIRWESPRFLSKSFLAFVTFNLINYSLLAAEVLTTNIADTSAEKRTFYQHIFNGCYAVLLFIVVVFFLIYGVEVFFKLRGEFLKETKVCTIISPRPGTSTDGDEAQDTLVTKQGIQTDLLDGDGTVDPRSVDLSQLHQSRVGLISLALMLILIVCFLASETLSEFWKTKVPVVSRNWHDLVFRLAEIGVAVWFPCALWNSMAPERLWLLNPRRLLARQLDDAKLADLLAQHHHDAKTLADLSQLGWRQKAWYFLELAKYWIVWRFALTVFFKPLPLPVNGKETQNSDAANAVGSNTNSNVERDSLVDSVGSSRDCWICYDSSRAEPLIRPCRCTGDVSAVHHDCLSRWLVESAASPDGLKCKVCNTPYIVQETNRVEWERGFTWSHWAGTAAAVTALTGAAAGAWALAQLYPSSLVRVLAAGAALLVCYVALRFLGTNTVSAYHRARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKDVLDQALKGEAK

Uniprot

A0A2A4J7W1 A0A0P6CYC6 A0A0P6JLX9 A0A164YTE0 A0A0N8AZE5 A0A0P5EAF1 + More
A0A0P5HHG3 A0A131XQP9 A0A1E1X5S7

Pubmed

28503490

EMBL

NWSH01002568 PCG67959.1 GDIQ01245850 GDIQ01209105 GDIQ01209104 GDIQ01191544 + More
GDIQ01187615 GDIQ01166811 GDIQ01166810 GDIQ01149577 GDIQ01085806 JAN08931.1 GDIQ01014549 JAN80188.1 LRGB01000868 KZS15587.1 GDIQ01227899 JAK23826.1 GDIP01144877 JAJ78525.1 GDIQ01227898 JAK23827.1 GEFM01006437 JAP69359.1 GFAC01004575 JAT94613.1

Proteomes

UP000218220 UP000076858

Pfam

PF12906 RINGv

Interpro

IPR013083 Znf_RING/FYVE/PHD + More
IPR011016 Znf_RING-CH

Gene 3D

3.30.40.10

ProteinModelPortal

A0A2A4J7W1 A0A0P6CYC6 A0A0P6JLX9 A0A164YTE0 A0A0N8AZE5 A0A0P5EAF1 + More
A0A0P5HHG3 A0A131XQP9 A0A1E1X5S7

PDB

2D8S E-value=0.000104324, Score=110

KEGG

101742687 no KO assigned | (RefSeq) uncharacterized LOC101742687

GO

GO:0008270 GO:0016021 GO:0016874 GO:0006836 GO:0003824 GO:0016788 GO:0007165 GO:0005525 GO:0008033 GO:0003676 GO:0016787

Length:

582

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

139.4621

Exp number, first 60 AAs:

13.39902

Total prob of N-in:

0.79043

POSSIBLE N-term signal

sequence

inside

1 - 99

TMhelix

100 - 122

outside

123 - 136

TMhelix

137 - 159

inside

160 - 227

TMhelix

228 - 247

outside

248 - 266

TMhelix

267 - 289

inside

290 - 469

TMhelix

470 - 492

outside

493 - 501

TMhelix

502 - 524

inside

525 - 582

Pi

328.071808

Theta

17.662597

Tajima's D

2.895164

CLR

0.247022

CSRT

0.974651267436628

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree