Gene

KWMTBOMO12182

Pre Gene Modal

BGIBMGA004216

Annotation

Sodium-dependent_neutral_amino_acid_transporter_SLC6A17_[Papilio_xuthus]

Location

Bomo_Chr20(-):8874258-8908129      View in EpiBrowser

Full name

Transporter      

Location in the cell

PlasmaMembrane   Reliability : 4.928

CDS

ATGGCGGCCAAAGCTGAGACTATAGGGCCGCGTAATGGCCACGAATTGGCGCCATTAACGACGCGGGCTGACGGCTCTGAACGACCCCACGGAGTTACCATCGTCCTCCAAGGTTCTAGAGGATCATTGCACCGCGACGGACCGGACGATGACAGGGCTGCCTGGTCCGGGAAACTACAGTTCTTTTTGTCGATTATTGGATACTCTGTGGGCTTGGGTAACATTTGGCGGTTTCCGTATCTGTGTCAACAAAATGGCGGAGGTGCCTTTCTGATTCCGTTCCTCATCATGTTGGTCCTGGAGGGTGTACCTCTGTTCCTGATAGAGATGGCCATAGGGCAGAAGATGCGTCTCGGAAGCCTCGGCGTTTGGAACACCATCCATCCCTGGCTGGGTGGTATCGGCATATCCAGCTGCATAGTGACCCTATTCGTCGCTCTGTACTACAACGTGATCATAACCTGGGTTTTCTTCTATCTATTCAACAGCATCCGGCTAACAGCAGATCAGCTACCCTGGTCTAGCTGTCCCCAGGACAACGGGACAGCTGAGGCCGAATGCAACAAGGCCTCAGCAACAGTTTACTTCTGGTACCGGGAGGCTCTGGACGCGGCGCCCAGCATCGAGGACCCGGGGTGCCGCGCTGTGATGAAGGGAATCCAGAGTAGCGGGAAGGTGGTGTACTTCACGTCTCTGTTTCCGTACGTGGTCCTGACCATCTTCTTCATCAGAGGCATCACGTTGCCTGGCTCCTCGGACGGGATCCTTCATATGTACAAGCCGAAGCTGGAAAAACTTCTGGATCCAACCGTCTGGTTGGATGCGGCCACTCAAGTGTTCTATTCCTTCGGTCTGGCTTTCGGTTCGCTGATCGCGTTCGGCTCGTACAACCCTCCCAACAACAACTGCGTGAGGGATGTGCTCCTCGTGTCCGTCTGCAACGCCCTCACCGCCATCTACGCCTCCGTGGTCATCTTCAGCATCCTCGGCTTCAAGGCGTACACCATGGTCGAAACCTGCATTACGAAGGAAATTAAAGTGCTGGCTCTCAACCACATCGGCGGGTTCACGCTCAACTCCACTCAAGATTACTACCGCGAGGAGTATCCGAAGCTGAACGAGACCCTCGTGGCTGCCTTCAACTTGACCGGCTGCACCATGAGCCGACAACTAGATGAGGCTGCCGAAGGTACAGGGCTGGCCTTCATAGTGTTCACGCAGGCGATTCTGAAGCTGACTCCAGCTCCGTTCTGGTCCATAATCTTCTTTCTGATGCTGCTGTCCCTGGGTCTGGGCAGCCAGATTGGTATCATGGAAGGGATGCTGTGCACCATTTTCGATATTGACTTCTTCAAACGACTCAGCAAGCCAGTTATAACCGGAATTGTCTGCTCGTTCTGTTTCCTCGTCGGTCTGATCTTCACGACCGGAGCCGGGGAGTACTGGCTGAAGATGTTTGATTCGTTCGCCGGCACCATAGGCCTGGTGGTCGTCGCTCTGCTGGAGATGGTCTCCGTGATCTACATATACGGACACGAAAGGTTCAGCAACGATATATACGAGATGACCGGCTACCGGCCCGGGCTGTACTGGCAGGTGACTTGGCGCTACGTGGGGCCCTTCATAGTCACCTGCATCCTGTTCTCGTCACTGGTCTTCATGCTGATCAACCCGCCGACGTACGGCGCTTGGGATGCTAACGAGGGTCGCGTTGTAAAAACCCCGTATCCAACATGGGTGCTATTCATCGCAATACTGATGATCCTGGCCGGTGTCCTGCCAATACCTGCCGTGCTCCTGCTGAGAAGGTTCCAGTGCCTCGCCTTCGACGTGGACATTCACCAGGGTTCCATCCGACGTATAGAAACCACAGTTTCGACTAAGGAGATGATGAGCGACCAAGATGTTCTGTCGCCGGAGACCGCGCCCCCGCCCCCGCGCAGCTCGTCGCGGAGGCCGCCAGCACTAAGTTCACTATCGGCGATTTTGACTGTGTGGACAGCGGCGAGGAGAGAACGTCCAGACGCCTGCCAACGAGCATCGTGCGACGTACGAAGAAATAAATGCCGATTCTGA

Protein

MAAKAETIGPRNGHELAPLTTRADGSERPHGVTIVLQGSRGSLHRDGPDDDRAAWSGKLQFFLSIIGYSVGLGNIWRFPYLCQQNGGGAFLIPFLIMLVLEGVPLFLIEMAIGQKMRLGSLGVWNTIHPWLGGIGISSCIVTLFVALYYNVIITWVFFYLFNSIRLTADQLPWSSCPQDNGTAEAECNKASATVYFWYREALDAAPSIEDPGCRAVMKGIQSSGKVVYFTSLFPYVVLTIFFIRGITLPGSSDGILHMYKPKLEKLLDPTVWLDAATQVFYSFGLAFGSLIAFGSYNPPNNNCVRDVLLVSVCNALTAIYASVVIFSILGFKAYTMVETCITKEIKVLALNHIGGFTLNSTQDYYREEYPKLNETLVAAFNLTGCTMSRQLDEAAEGTGLAFIVFTQAILKLTPAPFWSIIFFLMLLSLGLGSQIGIMEGMLCTIFDIDFFKRLSKPVITGIVCSFCFLVGLIFTTGAGEYWLKMFDSFAGTIGLVVVALLEMVSVIYIYGHERFSNDIYEMTGYRPGLYWQVTWRYVGPFIVTCILFSSLVFMLINPPTYGAWDANEGRVVKTPYPTWVLFIAILMILAGVLPIPAVLLLRRFQCLAFDVDIHQGSIRRIETTVSTKEMMSDQDVLSPETAPPPPRSSSRRPPALSSLSAILTVWTAARRERPDACQRASCDVRRNKCRF

Similarity

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.

Uniprot

A0A194QGZ1   A0A2W1BEJ8   H9J3X7   A0A2H1VJ94   B4N5X0   B3MDG0   + More
A0A1B0FL12   A0A0R3NNC5   Q28ZU2   A0A0K8UCM2   A0A0K8TY95   A0A3B0J5I5   A0A1A9W9T4   A0A0M4E4V6   A0A0A1XC94   A0A1B0BI41   B4KTB1   A0A0Q9XAQ4   W8C1S1   A0A1W4VPK5   A0A0R1DRY8   B4P4D3   A0A0A1WSL6   A0A0Q9W2X0   B4HNQ4   B4QCY5   A0A0J9RG17   Q8MZ19   A1ZB95   A0A0R1DXM0   A0A0R1DS63   W8BQY9   B4LJF7   B4JW26   A0A0J9RFY1   A0A0B4K7V4   B3NMU1   A0A0Q5VK42   A0A0Q5VM50   A0A194QQG4   A0A1I8P1Q7   A0A1L8DJZ3   A0A1L8DK64   A0A1I8P1V9   T1P984   A0A084VZW1   T1PIA6   A0A182Y6V0   A0A0L0BSN9   A0A2M4AEM6   A0A1W4WMN1   A0A182Q7N7   A0A182IK72   A0A2M4ABQ2   A0A2M4CUX1   A0A2M4CV62   A0A2C9GQ01   B0W2G6   Q7PSR4   A0A1Q3G4Y1   A0A3S2LCP4   A0A087ZYX9   A0A2A3EE39   A0A310SMG5   A0A0M8ZZS3   V9IMJ3   Q17EB9   A0A0P6ITC7   A0A1J1IX61   D6WPH4   A0A1Y1MNJ3   E0VXR3   A0A3L8DW08   A0A0C9RV83   A0A067RAM0   A0A154PRY2   A0A195D5I5   A0A1B6CCJ8   K7JAA6   A0A151JWM4   A0A158NYK1   E2AVR7   A0A0V0G845   A0A023F0H7   A0A1B0GH21   A0A0P4VXM1   A0A195AZ86   A0A0L7RGX2   A0A151JNN0   A0A151WQ82   A0A0K8W4F8   A0A1A9VXI1   A0A1A9Y426   E2C0E5   W5JRP2   A0A1L8DK00   A0A2M4AD78   A0A182MLR1   A0A1L8DJR0  

Pubmed

26354079    28756777    19121390    17994087    15632085    25830018    + More
24495485    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24438588    25315136    25244985    26108605    12364791    17510324    26999592    18362917    19820115    28004739    20566863    30249741    24845553    20075255    21347285    20798317    25474469    27129103    20920257    23761445   

EMBL

KQ459053    KPJ04205.1    KZ150117    PZC73258.1    BABH01040244    ODYU01002878    + More
SOQ40909.1    CH964154    EDW79759.2    CH902619    EDV36408.2    CCAG010009476    CCAG010009477    CCAG010009478    CCAG010009479    CCAG010009480    CCAG010009481    CM000071    KRT02284.1    EAL25520.3    GDHF01027930    GDHF01026351    JAI24384.1    JAI25963.1    GDHF01032855    GDHF01032114    JAI19459.1    JAI20200.1    OUUW01000001    SPP75023.1    CP012524    ALC41178.1    GBXI01005726    JAD08566.1    JXJN01014764    JXJN01014765    CH933808    EDW10623.2    KRG05357.1    GAMC01010916    GAMC01010915    JAB95639.1    CM000158    KRJ99994.1    EDW91619.1    GBXI01012651    JAD01641.1    CH940648    KRF79465.1    CH480816    EDW48473.1    CM000362    CM002911    EDX07690.1    KMY94870.1    KMY94871.1    AY113413    AAM29418.1    AE013599    BT044137    AAF57678.2    ACH92202.1    KRJ99993.1    KRJ99992.1    GAMC01010917    GAMC01010914    JAB95641.1    EDW60537.2    CH916375    EDV98164.1    KMY94872.1    AFH08161.1    CH954179    EDV55095.1    KQS62093.1    KQS62092.1    KQ461181    KPJ07748.1    GFDF01007343    JAV06741.1    GFDF01007344    JAV06740.1    KA644720    AFP59349.1    ATLV01018984    ATLV01018985    KE525258    KFB43505.1    KA647870    AFP62499.1    JRES01001421    KNC23057.1    GGFK01005925    MBW39246.1    AXCN02001792    GGFK01004868    MBW38189.1    GGFL01004968    MBW69146.1    GGFL01004967    MBW69145.1    APCN01004511    APCN01004512    APCN01004513    DS231827    EDS29354.1    AAAB01008816    EAA05172.3    GFDL01000184    JAV34861.1    RSAL01000042    RVE50781.1    KZ288269    PBC29978.1    KQ759870    OAD62445.1    KQ435809    KOX72963.1    JR052336    AEY61674.1    CH477283    EAT44860.1    GDUN01000895    JAN95024.1    CVRI01000063    CRL04797.1    KQ971354    EFA06811.1    GEZM01026116    JAV87232.1    DS235840    EEB18169.1    QOIP01000003    RLU24423.1    GBYB01011606    JAG81373.1    KK852591    KDR20718.1    KQ435037    KZC14104.1    KQ976818    KYN08138.1    GEDC01026114    GEDC01025357    JAS11184.1    JAS11941.1    AAZX01002420    KQ981647    KYN38657.1    ADTU01003974    ADTU01003975    GL443183    EFN62476.1    GECL01002498    JAP03626.1    GBBI01004231    JAC14481.1    AJWK01003893    AJWK01003894    GDKW01002255    JAI54340.1    KQ976701    KYM77352.1    KQ414596    KOC70083.1    KQ978848    KYN27971.1    KQ982843    KYQ50000.1    GDHF01006211    JAI46103.1    GL451770    EFN78604.1    ADMH02000297    ETN67077.1    GFDF01007389    JAV06695.1    GGFK01005408    MBW38729.1    AXCM01000423    AXCM01000424    GFDF01007391    JAV06693.1   

Proteomes

UP000053268    UP000005204    UP000007798    UP000007801    UP000092444    UP000001819    + More
UP000268350    UP000091820    UP000092553    UP000092460    UP000009192    UP000192221    UP000002282    UP000008792    UP000001292    UP000000304    UP000000803    UP000001070    UP000008711    UP000053240    UP000095300    UP000030765    UP000095301    UP000076408    UP000037069    UP000192223    UP000075886    UP000075880    UP000075840    UP000002320    UP000007062    UP000283053    UP000005203    UP000242457    UP000053105    UP000008820    UP000183832    UP000007266    UP000009046    UP000279307    UP000027135    UP000076502    UP000078542    UP000002358    UP000078541    UP000005205    UP000000311    UP000092461    UP000078540    UP000053825    UP000078492    UP000075809    UP000078200    UP000092443    UP000008237    UP000000673    UP000075883   

PRIDE

H9J3X7    Q8MZ19    A1ZB95   

Pfam

PF00209   SNF

Interpro

IPR037272   SNS_sf        + More
IPR000175   Na/ntran_symport       
IPR002438   Neutral_aa_SLC6       

SUPFAM

SSF161070   SSF161070       

ProteinModelPortal

A0A194QGZ1   A0A2W1BEJ8   H9J3X7   A0A2H1VJ94   B4N5X0   B3MDG0   + More
A0A1B0FL12   A0A0R3NNC5   Q28ZU2   A0A0K8UCM2   A0A0K8TY95   A0A3B0J5I5   A0A1A9W9T4   A0A0M4E4V6   A0A0A1XC94   A0A1B0BI41   B4KTB1   A0A0Q9XAQ4   W8C1S1   A0A1W4VPK5   A0A0R1DRY8   B4P4D3   A0A0A1WSL6   A0A0Q9W2X0   B4HNQ4   B4QCY5   A0A0J9RG17   Q8MZ19   A1ZB95   A0A0R1DXM0   A0A0R1DS63   W8BQY9   B4LJF7   B4JW26   A0A0J9RFY1   A0A0B4K7V4   B3NMU1   A0A0Q5VK42   A0A0Q5VM50   A0A194QQG4   A0A1I8P1Q7   A0A1L8DJZ3   A0A1L8DK64   A0A1I8P1V9   T1P984   A0A084VZW1   T1PIA6   A0A182Y6V0   A0A0L0BSN9   A0A2M4AEM6   A0A1W4WMN1   A0A182Q7N7   A0A182IK72   A0A2M4ABQ2   A0A2M4CUX1   A0A2M4CV62   A0A2C9GQ01   B0W2G6   Q7PSR4   A0A1Q3G4Y1   A0A3S2LCP4   A0A087ZYX9   A0A2A3EE39   A0A310SMG5   A0A0M8ZZS3   V9IMJ3   Q17EB9   A0A0P6ITC7   A0A1J1IX61   D6WPH4   A0A1Y1MNJ3   E0VXR3   A0A3L8DW08   A0A0C9RV83   A0A067RAM0   A0A154PRY2   A0A195D5I5   A0A1B6CCJ8   K7JAA6   A0A151JWM4   A0A158NYK1   E2AVR7   A0A0V0G845   A0A023F0H7   A0A1B0GH21   A0A0P4VXM1   A0A195AZ86   A0A0L7RGX2   A0A151JNN0   A0A151WQ82   A0A0K8W4F8   A0A1A9VXI1   A0A1A9Y426   E2C0E5   W5JRP2   A0A1L8DK00   A0A2M4AD78   A0A182MLR1   A0A1L8DJR0  

PDB

4XPF     E-value=8.4894e-83,     Score=784

KEGG

101742542    K05048 solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/

GO

GO:0016021   GO:0005328   GO:0005326   GO:0006836   GO:0005886   GO:0015293   GO:0005887   GO:0003824   GO:0016788   GO:0007165   GO:0005525   GO:0008033   GO:0003676   GO:0016787  

PANTHER

PTHR11616  

Length:

691

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

249.59872

Exp number, first 60 AAs:

2.1118

Total prob of N-in:

0.10672

outside

1  -  58

TMhelix

59  -  81

inside

82  -  87

TMhelix

88  -  110

outside

111  -  129

TMhelix

130  -  152

inside

153  -  225

TMhelix

226  -  248

outside

249  -  274

TMhelix

275  -  294

inside

295  -  306

TMhelix

307  -  329

outside

330  -  414

TMhelix

415  -  437

inside

438  -  457

TMhelix

458  -  480

outside

481  -  489

TMhelix

490  -  512

inside

513  -  532

TMhelix

533  -  555

outside

556  -  578

TMhelix

579  -  601

inside

602  -  691

 

 

Pi

246.65015

Theta

155.708711

Tajima's D

2.147248

CLR

0.109383

CSRT

0.901354932253387

Interpretation

Uncertain