SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12181
Pre Gene Modal
BGIBMGA004228
Annotation
PREDICTED:_NF-kappa-B_inhibitor-interacting_Ras-like_protein_isoform_X1_[Papilio_polytes]
Full name
NF-kappa-B inhibitor-interacting Ras-like protein      
Location in the cell
Cytoplasmic   Reliability : 2.024 Nuclear   Reliability : 1.491
 

Sequence

CDS
ATGGGTAAAACAAGCAAAGTTGTTGTATGTGGCATGAAGGGAGTCGGTAAAACAGCTATCCTAGAGCAGTTAATTTACGGCAATGTAAATTTGAAATCATGTTTTTATCCCACGATCGAAGACATTTATGTGGCGAACATCGAAACAGATCGCGGCCCGAAAGAACGCGTCTGTTTCTACGACACAGCGGGCTTGGAGCCTCCGCTTACAGGCGAGTTTAAAGGTCCTCCGCAATCTCCTACAATGCAGCTAACGGCCAACCAAGTGCTCCAACGACACTATCTCGGTTTCTCAGAAGGTTTTGTCATGGTGTATGATACAGCGCGACCAGAATCGCTGGATGTACTCATGTATTTAAAGAAGGACATAGACAGGAACAAAGATAAGAAAGAGGTAGTAATACTAGTGATCGGTAATAGAACCGGACCAGATGATCCGAACAGCCTCGAGAACACATGCTCCAAAGCCTCGAATTGGTGTGCACGCGAGAAGGTCAGACATTTTGAGGTGAACGCAATGGATCGTCCGTCCCTATATGAACCATTCATCTTCATGACCTCGAAATTGAACCCGGTACAAAATAAGACGACCTTCCCGCAACTAAGCACGTTGAGTAAGCTCACCCAGAAGAACAATAAAAGTGAAGCCATGTAA
Protein
MGKTSKVVVCGMKGVGKTAILEQLIYGNVNLKSCFYPTIEDIYVANIETDRGPKERVCFYDTAGLEPPLTGEFKGPPQSPTMQLTANQVLQRHYLGFSEGFVMVYDTARPESLDVLMYLKKDIDRNKDKKEVVILVIGNRTGPDDPNSLENTCSKASNWCAREKVRHFEVNAMDRPSLYEPFIFMTSKLNPVQNKTTFPQLSTLSKLTQKNNKSEAM

Summary

Description
Atypical Ras-like protein that may act as a regulator of NF-kappa-B activity, possibly by preventing the degradation of NF-kappa-B inhibitor cactus.
Subunit
Interacts with NF-kappa-B inhibitor cactus.
Similarity
Belongs to the small GTPase superfamily. Ras family. KappaB-Ras subfamily.
Keywords
Alternative splicing   Complete proteome   GTP-binding   Nucleotide-binding   Reference proteome  
Feature
chain  NF-kappa-B inhibitor-interacting Ras-like protein
splice variant  In isoform B.
EMBL
BABH01040242    BABH01040243    KZ150117    PZC73261.1    ODYU01000663    SOQ35829.1    + More
NWSH01002285    PCG68676.1    KQ461181    KPJ07747.1    AGBW02011714    OWR46240.1    PCG68677.1    GAIX01003926    JAA88634.1    JTDY01002495    KOB71295.1    NNAY01003790    OXU18866.1    AAZX01002420    KZ288269    PBC29976.1    JR053624    AEY61977.1    KQ414596    KOC70086.1    KQ435809    KOX72966.1    KQ435037    KZC14102.1    KQ759870    OAD62447.1    KK852611    KDR20254.1    GL451770    EFN78602.1    KK107295    QOIP01000003    EZA53058.1    RLU24417.1    NEVH01021928    PNF19271.1    GL443183    EFN62478.1    LBMM01010920    KMQ87153.1    ADTU01003975    KQ981647    KYN38655.1    GL888608    EGI59116.1    KQ982843    KYQ49998.1    KQ976701    KYM77355.1    KQ978848    KYN27969.1    KQ976818    KYN08141.1    PYGN01002316    PSN30779.1    GL771866    EFZ09170.1    LJIG01022664    KRT79370.1    KQ971354    KYB26253.1    GEBQ01005270    GEBQ01002419    JAT34707.1    JAT37558.1    APGK01024144    BT127787    KB740539    KB632197    AEE62749.1    ENN80443.1    ERL90028.1    GFXV01000106    MBW11911.1    JRES01001254    KNC24192.1    GEDC01009264    JAS28034.1    CH480816    EDW46756.1    CH954177    EDV59690.1    CM000362    CM002911    EDX06010.1    KMY91974.1    AE013599    ACL83067.1    AGB93303.1    AF229841    AY061054    BT003452    CM000157    EDW89179.1    CH940648    EDW60987.1    DQ440459    CH477283    ABF18492.1    EAT44856.1    EZ423652    ADD19928.1    CP012524    ALC40852.1    ABLF02039936    CH902619    EDV36438.1    CCAG010021272    CH933808    EDW09985.1    GAMC01000248    JAC06308.1    JXUM01032435    KQ560955    KXJ80224.1    GDHF01016293    JAI36021.1    GEZM01061575    GEZM01061574    GEZM01061573    JAV70358.1    GDAI01002683    JAI14920.1    OUUW01000001    SPP75674.1    DS231827    EDS29348.1    CH916367    EDW00946.1    APCN01004511    GBXI01004297    JAD09995.1    GGMR01006131    MBY18750.1    GFDL01015060    JAV19985.1    GAKP01001511    JAC57441.1    CH674335    EDY71634.1    CH479183    EDW36346.1    GFDL01015061    JAV19984.1    AAAB01008816    EAA05174.3    GFDL01014902    JAV20143.1    ATLV01011135    KE524643    KFB35874.1    UFQS01001683    UFQT01000834    UFQT01001683    SSX11848.1    SSX27492.1    SSX31412.1    CH963849    EDW74606.1    CH984740    EDX16085.1    AJVK01014283    GFDF01006689    JAV07395.1    AJWK01003897    GG666659    EEN45470.1   
Pfam
PF00071   Ras
Interpro
IPR001806   Small_GTPase        + More
IPR042227   KBRS       
IPR027417   P-loop_NTPase       
IPR005225   Small_GTP-bd_dom       
SUPFAM
SSF52540   SSF52540       
PDB
3KUC     E-value=0.000257131,     Score=102

Ontologies

Topology

Length:
217
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.2561
Exp number, first 60 AAs:
0.25261
Total prob of N-in:
0.21723
outside
1  -  217
 
 

Population Genetic Test Statistics

Pi
220.984687
Theta
138.569983
Tajima's D
1.407084
CLR
0.392255
CSRT
0.762261886905655
Interpretation
Uncertain
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