Silkworm Genome Informatics Database

Gene

KWMTBOMO12164

Pre Gene Modal

BGIBMGA010798

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]

Location

Bomo_Chr20(-):8586169-8592066 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.882

CDS

ATGCGCTTATCACTAGAAAACATTCAGAAAGTTATAATATCTACAGCAGTTCTACACAACATCTGTAGAATTAATAATTTGCAAGAAACCCCAGCAGAGGTACTAATACCATTCCAAGCAATGGATGATGATGATCTTCAAACTATGGGAGTACAAGATAGCAGGGATAGAGCAGAATTAATAGAAGCCTATTTCTCAACTCTGTAG

Protein

MRLSLENIQKVIISTAVLHNICRINNLQETPAEVLIPFQAMDDDDLQTMGVQDSRDRAELIEAYFSTL

Uniprot

H9JMP5 H9IY69 H9JGQ0 A0A2A4IXD7 H9JFA0 A0A0J7K4L7 + More
A0A3S2LRZ4 A0A0L7LEJ9 H9JXW5 S4PY14 A0A2H1VXT4 A0A3S2KYY9 A0A0L7LI70 A0A1Y1N6P0

Pubmed

19121390 26227816 23622113 28004739

EMBL

BABH01016678 BABH01016679 BABH01043199 BABH01034282 BABH01034283 NWSH01005652 + More
PCG64078.1 BABH01027007 LBMM01014289 KMQ85244.1 RSAL01000314 RVE42625.1 JTDY01001465 KOB73799.1 BABH01040565 BABH01040566 GAIX01004083 JAA88477.1 ODYU01004776 SOQ45014.1 RSAL01000416 RVE41817.1 JTDY01001038 KOB75059.1 GEZM01016480 JAV91267.1

Proteomes

UP000005204 UP000218220 UP000036403 UP000283053 UP000037510

PRIDE

H9JMP5 H9IY69 H9JGQ0 H9JFA0 H9JXW5

Pfam

PF13359 DDE_Tnp_4 + More
PF05699 Dimer_Tnp_hAT

Interpro

IPR027806   HARBI1_dom        + More
IPR012337   RNaseH-like_sf
IPR008906   HATC_C_dom
IPR026103   HARBI1_animal

SUPFAM

SSF53098 SSF53098

ProteinModelPortal

H9JMP5 H9IY69 H9JGQ0 A0A2A4IXD7 H9JFA0 A0A0J7K4L7 + More
A0A3S2LRZ4 A0A0L7LEJ9 H9JXW5 S4PY14 A0A2H1VXT4 A0A3S2KYY9 A0A0L7LI70 A0A1Y1N6P0

KEGG

105841876 no KO assigned | (RefSeq) uncharacterized LOC105841876

GO

GO:0046983 GO:0016021

Length:

68

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00167

Exp number, first 60 AAs:

0.00167

Total prob of N-in:

0.36597

outside

1 - 68

Pi

153.604849

Theta

170.157522

Tajima's D

-0.998639

CLR

114.48767

CSRT

0.138043097845108

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree