SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12158
Annotation
PREDICTED:_putative_nuclease_HARBI1_[Papilio_machaon]
Location in the cell
Mitochondrial   Reliability : 2.207
 

Sequence

CDS
ATGCAAAGACCACCGTTGTACGAGCGTAGTCCCTTATATTATTTTGTTGCTGCAAGTTTACTTGAAAATGAAGAATATTCATCAAGAGAAGTTAGAGAAATTACACGCAGAGTTGCTCTGAGAAAGAAAAATAATCCTGTGGACATAAATGACGCGGAATTCAAAAATAGATACCGGTTGAATAAAGAATCATTCAAGTTTCTTTGTAATCAACTTAAGCAAAAAACATCTTTAAAAGCAAGTTCCAGGATAAGTTTGGAACTTAAGGTTCTTTGCGCGCTATCTTTTTATGCCACTGGATCTTACCAACGCTTAGTGGGAATGGCTAAATATTTGGGCCAAACGACTGTTAGCAAATGTGTGAAGGAAGTAACAGATGCTCTTGTAACTCCTGCAATCTTAAATACTTTCATAAAATTTCCTTATGCCAGAGCTGATAGAGATGTAATAAGAAACAAATTTTTTGTAAAGTATGGTTTCCCAGGAGTTATAGGATGCATTGATGGATGTCATTTCCATATTTTCACACCCAAAAAAGAAGTCGAACATTTATATTATAGTAGAAAGCATTTCCATTCATTAAATGTGCAAATGATTTGTGATAGTGATTGTCGTATTTTAAACGTAAATGCGAAATACGGAGGAGCCACCCACGACGCTTTTATTTGGGAAAATAGCGTGGTCAACAATTATATGCAGAGCTTACATCGAAATAACGAGCAAGTGTGGTTGTTAGGTGATTCTGGTTATCCACAGCGACCCTGGTTAATGACACCAATTTTAGATGCTGTTGAGGGAACTCCAGCTTATAAATATACAGCAGTTCATGGAAGGACCAGAGTAGCTATTGAAAATACTTTTGGGCGACTAAAAAACCGATGGCGTTGTTTGTGTAAGGATCGCACATTACACTATGCTCCAGTAAAATGTGCAAAAATCATAACAGCATGCTGTGTATTGCACAACTTAGCCATTGAGTTCAACGTACCTGAACCAGAACCAGCAGAGATTGAAAACCCCAATTTGGCTATGACAATATCTGAACATATTTTTCAAGAGAATACTACAGGAGATGGGTTAATTAGGGGTAGAGCTATAAGAAGTATTTTAGCGGATAAAATTAATAGACTTCATACATAA
Protein
MQRPPLYERSPLYYFVAASLLENEEYSSREVREITRRVALRKKNNPVDINDAEFKNRYRLNKESFKFLCNQLKQKTSLKASSRISLELKVLCALSFYATGSYQRLVGMAKYLGQTTVSKCVKEVTDALVTPAILNTFIKFPYARADRDVIRNKFFVKYGFPGVIGCIDGCHFHIFTPKKEVEHLYYSRKHFHSLNVQMICDSDCRILNVNAKYGGATHDAFIWENSVVNNYMQSLHRNNEQVWLLGDSGYPQRPWLMTPILDAVEGTPAYKYTAVHGRTRVAIENTFGRLKNRWRCLCKDRTLHYAPVKCAKIITACCVLHNLAIEFNVPEPEPAEIENPNLAMTISEHIFQENTTGDGLIRGRAIRSILADKINRLHT

Summary

EMBL
ODYU01008289    SOQ51743.1    KQ460748    KPJ12585.1    ODYU01007850    SOQ50983.1    + More
NWSH01001073    PCG72761.1    JTDY01008402    KOB64585.1    JTDY01010953    KOB57850.1    RSAL01001114    RVE40940.1    RSAL01000093    RVE47951.1    ODYU01008771    SOQ52663.1    GEZM01060077    GEZM01060076    JAV71299.1    NWSH01001816    PCG70036.1    KQ982441    KYQ56385.1    RSAL01000648    RVE41269.1    RSAL01000104    RVE47351.1    RSAL01000173    RVE45093.1    RSAL01000007    RVE54128.1    ABLF02031817    GEZM01060292    JAV71119.1    ABLF02041501    ABLF02013558    QOIP01000011    RLU16480.1    ABLF02009520    ABLF02023210    ABLF02041985    GGMR01019801    MBY32420.1    ABLF02007995    ABLF02008467    ABLF02002012    ABLF02004302    ABLF02059604    GEHC01000287    JAV47358.1    GGMR01016077    MBY28696.1    GFWV01005584    MAA30314.1    GEZM01054395    GEZM01054394    GEZM01054393    GEZM01054392    GEZM01054391    GEZM01054390    GEZM01054389    GEZM01054388    JAV73690.1    ABLF02019810    ABLF02008047    GGMR01012816    MBY25435.1    JTDY01003191    KOB69990.1    GEZM01034904    JAV83560.1    RSAL01000139    RVE46114.1    GEZM01034907    JAV83551.1    ODYU01005228    SOQ45883.1    GEZM01034913    JAV83538.1    BABH01031580    BABH01031581    ABLF02008699    GEZM01034909    JAV83546.1    ABLF02016385    ABLF02016544    GFPF01010629    MAA21775.1    KQ458981    KPJ04473.1    KQ460882    KPJ11475.1    GEZM01030206    GEZM01030205    GEZM01030202    GEZM01030200    GEZM01030198    GEZM01030190    GEZM01030187    JAV85700.1    JTDY01002614    KOB71085.1    GFDF01007731    JAV06353.1    GFAC01000064    JAT99124.1    ABLF02015400    RSAL01005142    RVE40041.1    ABLF02009691    GBBM01006404    JAC29014.1    AGBW02008415    OWR53452.1    GAKP01001624    JAC57328.1    KQ977331    KYN03448.1    ABLF02022814    ABLF02007989    ABLF02057071    GEZM01030208    GEZM01030207    GEZM01030201    GEZM01030199    GEZM01030197    GEZM01030195    GEZM01030194    GEZM01030192    GEZM01030188    GEZM01030186    GEZM01030185    GEZM01030184    GEZM01030183    GEZM01030181    JAV85710.1    KQ971357    KYB26054.1    GFAC01000051    JAT99137.1    GEGO01004180    JAR91224.1    AJVK01016518    RSAL01000077    RVE48763.1   
Pfam
PF13359   DDE_Tnp_4
Interpro
IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       

Ontologies

Topology

Length:
379
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.40789
Exp number, first 60 AAs:
0.00092
Total prob of N-in:
0.07007
outside
1  -  379
 
 

Population Genetic Test Statistics

Pi
164.236074
Theta
81.713161
Tajima's D
2.250645
CLR
0
CSRT
0.916554172291385
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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