Silkworm Genome Informatics Database

Gene

KWMTBOMO12157

Pre Gene Modal

BGIBMGA008832

Annotation

retrotransposon_protein?_putative?_Ty1-copia_subclass_[Oryza_sativa_Japonica_Group]

Location

Bomo_Chr20(+):8489917-8492830 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.261

CDS

ATGGAAGCCTACATCAATAAAATTAAAGAGTTGGCGTGTCAACTGAGTGAAATGGAATCCGCATTGGATGATGAGTTTATTGCCGTTATAATGCTAAGTGGGCTCACAGAAGATTTTGACCCCCTCATCATGGCAATTGAGAACTCAAATGTAAAACTCACCACGGAACTTGTCTCAGGAAAACTCTTGGCAGAAAACCAGAGGCGTGAGGAGAAACAAGATATCACTGCGTTGGTAACCAAGAAGCCACCGAGATGCTTCAAGTGCAAAAATGTGGGTCATATTTCTAAGAATTGTTCCAACAAAGGAAGCTTCAAGGAGTCAGCGGACGTAGGAGGCAACAAAGGCAAAAATAAATCCAGATATCAGACTAGGAACAATCCGAAGCAGAATATCCCAAAGGACAAAGCGCTCTTTGCAGCTCTGTCTGTAAAAATAAGTAGTGATGTGTGGTACATTGACTCCGGTGCTACTAATCATATGTGCAATGATAAAAAGTACATGATGGACTTCCGACCTAATAGTGTGGATGTGAGCATCGTGAATGGTGAAAAGCTACGAACAGGTGGCATTGGACATGAAGCAATATGTTTATTTTTTGAATACAAAAATGAAACTTTTCGGTATTTCCAACAATTCAAAGCTCTTGTTGAGAAAGAAACGGGAAAGGAATTAAAAATACTTAGGACTGCTAGGGGCGGTGAGTATATGGGTGAGTTTCAGGAATTTCTCAAGAAGAATGGCATCCAACACCAGAAAACTATTGCGGATAGTCCGCAACAGAATGGTGTTGCTGAACGGGCCAATAGGTCCGTCATAGAGAAGGCATGGAGTATGCTGCGGGATCCTAGGCTGGGAATGAAATTTTGGGCTGAGGCTGTGAACACTGCCGTATACCTTAAGAACCGAAGTCCAACCAAAGCTGTGATAGGAGCTACTCCGGAGGAAAAATGGTCCAACAAAGCAAGCAAGAGGGCAAGCTTCGTGAGATTAGTCGACAACCCTGATGATCCCCAGACTGCAGCCGAGGCCTTAAACGGGCCTGAATCGAACAGTTGGAGAAAGGCAATGGCAGATGAGTATAATTCCTTTGTTAAGAACAAGTGTTGGACCCTGACTGAGCTTGAACCCAGCCACAAACCAGTCAAAAGTAAATGGATTTTCAAAAGAAAATATGGAGCAGATGGAGAGTTACTAAAGTATAAAGCTCGTTTAGTGGCCAAGGGTTACACACAGAAGTACGGTATTGATTACCAAGAGACTTTTTCACCAGTGGTAAGGTACTCTACAATTAGGATTTTACTTGCTTTAGCAGCTGAACATGGCCTGTCCATTGAGCACCTGGATGTCAAAATGGTGTTCCTTAATGACGACCTCGAGGAAACTGTATACATGGAGCAGCCAGAGTTCTTTCAAGAAAAAGGAAAAGAGAACATGGTGTACAGGCTAAATAAAGCTGTGTACGGCTTAAAACAGGCATCCAAGACATGGTATGACAAAATTACAAAGATTTTGTGTCACAAACTACTATTCAAGCAATTAAGCACTGAGCCATGTGTCTACTTTAAAAGTGAAAATAAGTCTATGATGATAATAGTTCTCTATGTCGATGACCCATTGTTTTCACATCCCCCAACTTTCAAGGAAAACAGAAAATAA

Protein

MEAYINKIKELACQLSEMESALDDEFIAVIMLSGLTEDFDPLIMAIENSNVKLTTELVSGKLLAENQRREEKQDITALVTKKPPRCFKCKNVGHISKNCSNKGSFKESADVGGNKGKNKSRYQTRNNPKQNIPKDKALFAALSVKISSDVWYIDSGATNHMCNDKKYMMDFRPNSVDVSIVNGEKLRTGGIGHEAICLFFEYKNETFRYFQQFKALVEKETGKELKILRTARGGEYMGEFQEFLKKNGIQHQKTIADSPQQNGVAERANRSVIEKAWSMLRDPRLGMKFWAEAVNTAVYLKNRSPTKAVIGATPEEKWSNKASKRASFVRLVDNPDDPQTAAEALNGPESNSWRKAMADEYNSFVKNKCWTLTELEPSHKPVKSKWIFKRKYGADGELLKYKARLVAKGYTQKYGIDYQETFSPVVRYSTIRILLALAAEHGLSIEHLDVKMVFLNDDLEETVYMEQPEFFQEKGKENMVYRLNKAVYGLKQASKTWYDKITKILCHKLLFKQLSTEPCVYFKSENKSMMIIVLYVDDPLFSHPPTFKENRK

Uniprot

A0A2N9F5X3 A0A2G3BH31 A0A0J7KK14 A5BD08 A0A2Z6MUZ1 A0A151T7T1 + More
A0A2Z6NKB5 A0A2N9GH90 Q2QYV4 A0A2N9FCV6 A0A2N9FK26

Pubmed

29089032 22057054 16188032

EMBL

OIVN01000569 SPC82281.1 MCIT02000010 PHU05794.1 LBMM01006235 KMQ90788.1 + More
AM455001 CAN65499.1 DF973631 GAU36464.1 CM003610 KYP63103.1 DF973917 GAU42393.1 OIVN01001923 SPC98962.1 DP000011 ABA95606.1 OIVN01000744 SPC84935.1 OIVN01001208 SPC91157.1

Proteomes

UP000224522 UP000036403 UP000075243

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF04755   PAP_fibrillin
PF13976   gag_pre-integrs
PF13961   DUF4219
PF00098   zf-CCHC
PF00078   RVT_1
PF13456   RVT_3
PF17921   Integrase_H2C2
PF03732   Retrotrans_gag
PF17919   RT_RNaseH_2

Interpro

IPR036397   RNaseH_sf        + More
IPR039537   Retrotran_Ty1/copia-like
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR013103   RVT_2
IPR039633   PAP
IPR006843   PAP/fibrillin_dom
IPR025724   GAG-pre-integrase_dom
IPR025314   DUF4219
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR041588   Integrase_H2C2
IPR002156   RNaseH_domain
IPR000477   RT_dom
IPR021109   Peptidase_aspartic_dom_sf
IPR005162   Retrotrans_gag_dom
IPR041577   RT_RNaseH_2

SUPFAM

SSF53098 SSF53098 + More
SSF57756 SSF57756

Gene 3D

3.30.420.10 2.40.70.10

ProteinModelPortal

A0A2N9F5X3 A0A2G3BH31 A0A0J7KK14 A5BD08 A0A2Z6MUZ1 A0A151T7T1 + More
A0A2Z6NKB5 A0A2N9GH90 Q2QYV4 A0A2N9FCV6 A0A2N9FK26

KEGG

NA

GO

GO:0015074 GO:0003676 GO:0000943 GO:0016301 GO:0008270 GO:0004523 GO:0019001 GO:0031683 GO:0007165 GO:0005525 GO:0008033 GO:0016787

PANTHER

PTHR11439 PTHR31906

Length:

552

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00971999999999998

Exp number, first 60 AAs:

0.00263

Total prob of N-in:

0.00547

outside

1 - 552

Pi

176.270143

Theta

207.554598

Tajima's D

-0.556322

CLR

0.902242

CSRT

0.233288335583221

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics