SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12154
Annotation
RdRp_[Camponotus_nipponicus_virus]
Location
Bomo_Chr20(-):8435055-8437866      View in EpiBrowser
Full name
RNA-directed RNA polymerase      
Location in the cell
PlasmaMembrane   Reliability : 1.415
 

Sequence

CDS
ATGACGGGGGCGCATGCTGCGCAGCCTGGTTCGGTTATGATGAGCGGCACACCTGCTATTACTACCCAGTCACTGGCGACGGAGATGATAGAGCCGCGCAGGCTGTACGTCTTGTACTCTCGCATGGAGGCTGGGAACCACGATATGACCGCCACCCGTGTTACTGACATACAGTACCCCGACCCCATTTCCCTGGAATCTATCATATCAGCAGCAAAAAACTATCTGCTGTACCCAGCGCTGTCAGCAGTGCTGGGTTTTATGTCGGGGGGTCCGACCGGCGCTGTGGTGGCGGGAGCGAGCCACGTTATAAGCCAGGCGGTAAAGGACCTAGTGCCGAGGGAGCACTCGGATGTGGTGAGGGACGTGCTAGACAAGACGAAGGAGAAGGTGGCCGAGGGTGCGGCACCTGGCGCCCATGGGTATCTCCCTGGTGGCTTTCAGTGCGAGTACGGCTCGATCTTGGATAGTGGGATCCTGGATGTCATAGGCACTCCAACAGACCTACGGGCGCGTCCAAGCGGGCTGGATCAGCTGAGGAGGCTGCGGGGGGGCGTCCCGCGGGACTGGCCGGTTCCGTCAGGGGTCTCTTGCTCCTGGCCGCTGTACTTTTACTACACTTGTCTTAAAAAAATAGGACAGAAGACCAGTGCCATGGACTTGCGGTACATGCTTGGCGTGATCCGTAACCGATGGAACAACCGCGCGGTGCGATGTGAGTTGCATTACATGGATGATTTCTTTAGGCTGAACCTGAAAAACATCAGTGGTTTTTGTTTCCCGAGGATCTTTAGTGGGGGACCGGTTTTTCAGTTGTTTACCCACTTGCACGCTTTGACTGGCAAGTGCCCATTCACCCAGGATCAAATCATAAACGACATCTCGACCTGGGTGAGCGACCGCGGGGTCGATGGTGTGGAGAAGAATTTCAGGCGGGCCAGCGTAGCCGCAACTCTGGACCGTGTATTTACGAGGTGGAGGCCCTCGGATTACGATGGGCACATGGACTTGGAAAACTATAGTAACGACTTTATGCGCTGGGGCACATCGGGGGGCGGCCCCAGGTCAACTATAAATCGTGAGACTTACCGAACGAAGTGGGCGTGGGGTTTTGCCCGGTACACCGGCCCAGATGGGTGTCCGCTGTCTCGGCCCAGCCTCTACCAGGACAGCCTGGCCACTAGGGACGAGGCGATAATAGCTCTGAAGGAGGAAGCTCCAAAAACTCGGGAGATCATAGCGACCCCGATGCCTAGCTACTTGCGCCAGAGTTACCTGTTGTATCGCTGGGGAAAACCAAAGCTGCCGAGCCCGATATCTAGCAGGCAGTGGGTGTCTCAGTTTGAGCAGGTTCACCCTAAGTGGTACGGGTGTATAGACGGTGAAAAGTTTGATCAGACTGTGCCTCGGTGGTTTGTGATTGACGTGATCGACCGGCTTGGCGGCCTCGACGCGGAGACTAGGAGAGTGGCTGACCTGGAAATAGAACACCTCCGGACCCTCAGCGTCCATTACAACGGTCGCGCGTGGAAGTGGGAGGGGGGCTTGTTGTCGGGGTGGAGACTTACTAGTGTCATGGGGACGTTGGCGTCGGTGTGTGCGGCCGACTATATACGTGCGGAGACGGGCAGTGAGGGGTCTGTCGAGATTGGAGCTATGGGCGATGACCTGGTTTTATGGAGCTACAATACCGAGTTGAGGCCCGAAGTGATGGTGGCTTGTTACAACGATTTCGGTCTTCGGGCTAACCTGCATAAGACGATCAGCGGGCCGACCGGTGAGTTTTTGCGCAAGGTACTGTCGGACGGGGGAGGCGTCGGTTACCCTGCCTTGGGGGCGAGGACGCTGATGTATGCCAACCCGTGGGTTTCATCGTACAAGTATGAAAAGGAGCTGGAACTCGCTAGCAGTTGGATGACTTTCATCTCTCGCTTACACAGGCACGCCGCGCGTGGGGTCGGTGACACTCTCGGACCGATATACGTGGGGTGGATGTCTAACGCGTTGCGGCAGGAGTTTGGGGCGGGTCCGTGGAGGGACTGGGTCTGTACGCCCGTCAGTGCGGGTGGTGGAGGTCCAGTCGAATTTAGCGACCCGGGGACCTGGACCCAGTTGCAGCATCAAGAGACCGGCAAGCTGTTACACCTTGATGGTTACATGAGTGTGGCTGCGAAGTTGGGTATACTTAAGTCAAAACTGGTTTTTAAGAGGATAGCTTCTTTCGTCCCTATACCGTCGGTGGGGGCGATGCTCAACTATAAAGCTTTGGCTGGTTCTGTTTCCGATAAGGACACAATATCGATTAGGAAGGACACCAATATTACGGACTTAATCTTTGGTCTGGCTTCGGGACGGTATAACCGCTCTGACGTTAACATGAGGTTGAAAGCGCCGTTGACGCGGGCTCAGCGTGGGCTGACGGTGTCTGGGTTGATGGACCTAATCTTGGGGCTAGGAGAAAATTCCGAATCGGGTCTCACCAGTATATGTCATTCAAAGGAAACCTGTAGTAGTGTGTCCAGCGTTGTTCGGCGAGCAACGCAGAGTGCGCTGGTTCAACGCACAATCAAAAATTGCCGCTGTTGA
Protein
MTGAHAAQPGSVMMSGTPAITTQSLATEMIEPRRLYVLYSRMEAGNHDMTATRVTDIQYPDPISLESIISAAKNYLLYPALSAVLGFMSGGPTGAVVAGASHVISQAVKDLVPREHSDVVRDVLDKTKEKVAEGAAPGAHGYLPGGFQCEYGSILDSGILDVIGTPTDLRARPSGLDQLRRLRGGVPRDWPVPSGVSCSWPLYFYYTCLKKIGQKTSAMDLRYMLGVIRNRWNNRAVRCELHYMDDFFRLNLKNISGFCFPRIFSGGPVFQLFTHLHALTGKCPFTQDQIINDISTWVSDRGVDGVEKNFRRASVAATLDRVFTRWRPSDYDGHMDLENYSNDFMRWGTSGGGPRSTINRETYRTKWAWGFARYTGPDGCPLSRPSLYQDSLATRDEAIIALKEEAPKTREIIATPMPSYLRQSYLLYRWGKPKLPSPISSRQWVSQFEQVHPKWYGCIDGEKFDQTVPRWFVIDVIDRLGGLDAETRRVADLEIEHLRTLSVHYNGRAWKWEGGLLSGWRLTSVMGTLASVCAADYIRAETGSEGSVEIGAMGDDLVLWSYNTELRPEVMVACYNDFGLRANLHKTISGPTGEFLRKVLSDGGGVGYPALGARTLMYANPWVSSYKYEKELELASSWMTFISRLHRHAARGVGDTLGPIYVGWMSNALRQEFGAGPWRDWVCTPVSAGGGGPVEFSDPGTWTQLQHQETGKLLHLDGYMSVAAKLGILKSKLVFKRIASFVPIPSVGAMLNYKALAGSVSDKDTISIRKDTNITDLIFGLASGRYNRSDVNMRLKAPLTRAQRGLTVSGLMDLILGLGENSESGLTSICHSKETCSSVSSVVRRATQSALVQRTIKNCRC

Summary

Catalytic Activity
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Uniprot
A0A140JSW5   A0A0F7R0H9   A0A1L3KF34   W8AKC2   A0A2S0S4N4   A0A1L3KF64   + More
A0A2L0V7V2   A0A1L3KF40   A0A2L0V7V7  
EC Number
2.7.7.48
Pubmed
25787938    27880757    24495485    29644097   
EMBL
LC101918    BAU58962.1    LC026053    BAR72205.1    KX882974    APG76030.1    + More
GAMC01020288    JAB86267.1    MF893249    AWA82248.1    KX882969    APG76023.1    MG546515    AVA07543.1    KX882944    APG75984.1    MG546516    AVA07545.1   
Proteomes
UP000201142    UP000201219    UP000203324    UP000289472    UP000289380   
Pfam
PF02123   RdRP_4
Interpro
IPR001795   RNA-dir_pol_luteovirus       
ProteinModelPortal
A0A140JSW5   A0A0F7R0H9   A0A1L3KF34   W8AKC2   A0A2S0S4N4   A0A1L3KF64   + More
A0A2L0V7V2   A0A1L3KF40   A0A2L0V7V7  

Ontologies

KEGG
NA   
GO
GO:0000166   GO:0003968   GO:0003723   GO:0006351   GO:0019001   GO:0031683   GO:0007165   GO:0005525   GO:0008033   GO:0003676   GO:0016787  

Topology

Length:
861
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.76024
Exp number, first 60 AAs:
0.0697
Total prob of N-in:
0.13876
outside
1  -  861
 
 

Population Genetic Test Statistics

Pi
49.916825
Theta
57.38482
Tajima's D
-1.127155
CLR
2193.69634
CSRT
0.112344382780861
Interpretation
Uncertain
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