Gene

KWMTBOMO12150

Pre Gene Modal

BGIBMGA004258

Annotation

polyprotein_[Bombyx_mori]

Location

Bomo_Chr20(-):8409111-8411326      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.011 Nuclear   Reliability : 1.44

CDS

ATGTCTTTAGAAGACAACGAAAGCTTCACAGTTTCACGGGACAACGAGAACTGGTACATAGGTAATGGCGCAACAAGCCACGTCACCAACAGAGCTGACCTTTTCCAAACCTACGAACATTTCAATGAGAACTACACTGTTACAACGGCCGCTGGTAATGAAGTCCGTGCCAAAGGCAAAGGAACAGTACAGCTCAGAGATGTTAACGGGAAACAAATCGACATCAGCCTGCAAGACGTCTGGTACGTTCCGGCCATAAGCAAGAACCTCTTCTCCGTACTCGCACTTCACGATCGAGTCCCGAATAGCACCTTTTCATCCAGGACAACTGCATGCAACGTCATTGTCAACGGGAAAGTATGCTTGATAGGGAAGAGACAAAAACAAGGTGGCTTATATCGACTGGAAGTAAAACCCGTATTGCCAGAAAAACCACCCGAAGTCTTTGCAACTACAGCAACGATGCAACTGTACCACGAGAGACTCGCTCACCAAAATAAAAGACACGTAAGAGCGACGATCCAACGGGAACTAGGTCTAATCCTGCCGATGGATAAAGATACCTGTGAAGGCTGCATCTTTGGAAAGGCGCATGGACTTAAATTCGGTACAAGAACCCGAGCTACCGCGCCCGGAGAAATCGTACACACCGACGTTTGCGGCCCGTTTCAACCTAGCTTCTCAAACTATAAGTACTACGTTCTGTTTAAAGACGACTTTACTGGCTATCGTATGGTGTACTTCATACGCAAGAAGTCCGAGGTCAAAGACAAGTTAGTTTTGATGATCGCTCAAACTAAAACAGTCGGACACACCATAAAATGCCTTCTAAGTGACAACGGCGGTGAATTTGACAACGCGTCCATAAAAAGTGTTTTAGACACACATGGAATAGCACAGCGACTCGTCACCCCGTATACACCTGAACAAAACGGAGTAAGCGTAACGGAGATAGCAAGATCAATGATGTACGCTCATGAGCCATTACCGCAAGTGCTATGGGCAGAGCTCATTAATACCGCCGCATACATACTGAACAGAACAGGTCCCACAAGTTCAGATAAATCTCCGCATGAACTTTGGTATGGAAAGAAACCTATTATTAAACATCTCCGAATAATAGGCTCAATCGCATACGTCCATATTCCAAAGCAGAAGCGTAGAAAATTCGACAAAAAGGCGATAAAAGGTCGACTTATCGGGTACGACGAAGATTGCTACCGTATCTGGATCACAGACGGAAAACACTCGACGCTCGTCCGCTCTCGTGACGTAATCTTCGATGAGAAACCTCTTCCTATCTGTAATAGTGAAATTCCTAAAACAGAAGTTGAGACAAGAGAATACCCGATTACCATAACGCCAAATACGAACTTAGAAAGAGAAGTTACAATTCCAGAGCAAACACACGTTCACGAGAGAGATACAACTACCGAAACAATCTCCAACGAGCATGATCATGTTCTCGAGGGAGAAGAGTCGGATCAAGTCCTCTACGAAAACCATGACCATGAAGACGAAATGACAGTTCCAGAAGAATTTTATGACGCTGAACCACCGCCAACCGACTATAATCTTAGAGATCGCTCACTGATTCGACGTCCTGAGAGACTAAGAGATTACGTCTGTATCACTGAAACATTCCCAAATAATTTCGCAGACGCTATGAAAAGGGACGATCGCGAAGAATGGCAAAGAGCAATGGATAGCGAATTGAAATCCTTCGAAGACCTGAACGTTTGGACGCCGTGTGCATTGCCAAAAGGACGAAAAGCACTTCCCTGCAAATGGTTTTTACGGATCAAAGGAAATCCAGATGGCACGATCGACAAATACAAAGCTCGATTTGTCGTAAAAGGGTACAGACAAAGGAAAGGAGTAGACTATGACCAGACCTTCAGTCCTGTGGCACGCCTGACTACTGTACGAGCACTACTCAGTGTTAGTGCGCATGAAAACTTACATCTGGTCCAATTCGACGTCTGCACAGCCTTTCTGAACGGAAAGCTCGAGGAAGAAATATACGTTCAATCGCCAGAAGGGTGCAACCTCACGGAAGGAACGTCTACCGTTTTCAAGCTTAACCGTAGCCTGTACGGACTTAAACAAGCACCAAGTGGGTATGAATGA

Protein

MSLEDNESFTVSRDNENWYIGNGATSHVTNRADLFQTYEHFNENYTVTTAAGNEVRAKGKGTVQLRDVNGKQIDISLQDVWYVPAISKNLFSVLALHDRVPNSTFSSRTTACNVIVNGKVCLIGKRQKQGGLYRLEVKPVLPEKPPEVFATTATMQLYHERLAHQNKRHVRATIQRELGLILPMDKDTCEGCIFGKAHGLKFGTRTRATAPGEIVHTDVCGPFQPSFSNYKYYVLFKDDFTGYRMVYFIRKKSEVKDKLVLMIAQTKTVGHTIKCLLSDNGGEFDNASIKSVLDTHGIAQRLVTPYTPEQNGVSVTEIARSMMYAHEPLPQVLWAELINTAAYILNRTGPTSSDKSPHELWYGKKPIIKHLRIIGSIAYVHIPKQKRRKFDKKAIKGRLIGYDEDCYRIWITDGKHSTLVRSRDVIFDEKPLPICNSEIPKTEVETREYPITITPNTNLEREVTIPEQTHVHERDTTTETISNEHDHVLEGEESDQVLYENHDHEDEMTVPEEFYDAEPPPTDYNLRDRSLIRRPERLRDYVCITETFPNNFADAMKRDDREEWQRAMDSELKSFEDLNVWTPCALPKGRKALPCKWFLRIKGNPDGTIDKYKARFVVKGYRQRKGVDYDQTFSPVARLTTVRALLSVSAHENLHLVQFDVCTAFLNGKLEEEIYVQSPEGCNLTEGTSTVFKLNRSLYGLKQAPSGYE

Uniprot

B3Y003   A0A1Y1K1E5   A0A1Y1KNM9   A0A1Y3EJI6   A0A085MW59   A0A0V1NHV8   + More
A0A0V1M1K0   A0A0V1B5K0   A0A0V1B5A2   A0A0V1K2T2   A0A0A9YL44   A0A1Y3E8D5   A0A0N5E2R3   A0A0V1IPN2   A0A0V1DTZ3   A0A085NBE7   A0A0V0WRK3   A0A085MSN1   A0A085NBL2   J9LCG1   A0A085N6E0   A0A1Y1LDU4   A0A139WFV5   A0A0J7K744   A0A1Y1KR09   A0A1Y1K5W6   A0A1Y1JZX1   A0A1X7U495   X1WMK8   A0A0A9YB53   A0A0A9W6P7   A0A0P6AI73   A0A0J7K9W0   A0A0J7K725   A0A0P5D6G1   A0A0P5AJS8   A0A0P5DII6   A0A2M4CWP1   A0A2M3YZL7   K7JBX1   A0A0J7KRG1   A0A2M4CV35   A0A2M3YZL3   A0A0J7KNZ2   A0A0V0RE76   A0A0J7KBA1   A0A0N7ZJE6   A0A2J7QWT7   A0A182GSW5   A0A2K3NXK0   A0A0J7KM48   A0A1W7R6A3   A0A0J7KDE2   A0A151R7U0   A0A1Y1NHZ0   A0A0V1NED0   A0A0P6B8Y5   A0A2K3MYT4   A0A0P6APU8   A0A1W7R6C3   A0A194RU38   A0A1W7R6J6   A0A2A4JRI1   A0A1W7R6K6   A0A182G1G7   A0A2Z6N0G5   A0A2K3MZ63   A0A0V1L945   A0A1Y1LCN3   A0A1J3CK86   A0A251UIF2   A0A182GA29   A0A2J7Q1Z2   A0A1W7R6D9   H3H839   A0A251T6N3   X1XQX4   A0A0A9YMV4   A0A0N7ZV66   W8BYI7   A0A2J7R668   A0A2J7RKJ6   A0A0P6JS54   A0A0P6IW88   A0A2J7R8S8   B6V6Z8   Q9ZRJ0   J9KJ72   A0A182GZN1   A0A392M193   Q7Y141   A0A1W7R685  

Pubmed

28004739    24929829    25401762    18362917    19820115    20075255    + More
26483478    24500806    28382043    22057054    26354079    28538728    16946064    24495485    26999592    8624443    29922311    16109971   

EMBL

AB378753    BAG68376.1    GEZM01099107    JAV53485.1    GEZM01078128    GEZM01078127    + More
JAV63002.1    LVZM01009926    OUC45303.1    KL367622    KFD61455.1    JYDM01000206    KRZ83588.1    JYDO01000312    KRZ65659.1    JYDH01000102    KRY32233.1    KRY32232.1    JYDV01000020    KRZ41499.1    GBHO01013359    JAG30245.1    LVZM01021469    OUC41373.1    JYDV01000213    KRZ24707.1    JYDR01000237    KRY65040.1    KL367520    KFD66793.1    JYDK01000067    KRX78390.1    KL367684    KFD60227.1    KFD66858.1    ABLF02020242    ABLF02020246    ABLF02042026    KL367545    KFD65036.1    GEZM01063217    JAV69187.1    KQ971352    KYB26731.1    LBMM01012672    KMQ86059.1    GEZM01078105    JAV63008.1    GEZM01096605    JAV54776.1    GEZM01096656    JAV54693.1    ABLF02066512    GBHO01016859    JAG26745.1    GBHO01043059    JAG00545.1    GDIP01034138    JAM69577.1    LBMM01010801    KMQ87218.1    LBMM01012536    KMQ86167.1    GDIP01162319    JAJ61083.1    GDIP01198316    JAJ25086.1    GDIP01156971    JAJ66431.1    GGFL01005562    MBW69740.1    GGFM01000952    MBW21703.1    AAZX01004352    LBMM01003976    KMQ92933.1    GGFL01004951    MBW69129.1    GGFM01000953    MBW21704.1    LBMM01004825    KMQ92052.1    JYDL01000266    KRX12804.1    LBMM01010133    KMQ87653.1    GDIP01239569    JAI83832.1    NEVH01009420    PNF33053.1    JXUM01085595    KQ563513    KXJ73717.1    ASHM01002084    PNY07765.1    LBMM01005619    KMQ91367.1    GEHC01000959    JAV46686.1    LBMM01008998    KMQ88473.1    KQ483989    KYP38573.1    GEZM01007166    GEZM01007165    JAV95327.1    JYDM01000301    KRZ82363.1    GDIP01019956    JAM83759.1    ASHM01014005    PNX95963.1    GDIP01039936    JAM63779.1    GEHC01000928    JAV46717.1    KQ459875    KPJ19636.1    GEHC01000868    JAV46777.1    NWSH01000816    PCG74073.1    GEHC01000867    JAV46778.1    JXUM01136904    KQ568499    KXJ68982.1    DF973673    GAU37486.1    ASHM01014140    PNX96091.1    JYDW01000105    KRZ55879.1    GEZM01063091    JAV69316.1    GEVI01023957    JAU08363.1    CM007895    OTG22666.1    JXUM01155348    KQ572178    KXJ68066.1    NEVH01019375    PNF22597.1    GEHC01000923    JAV46722.1    DS567278    CM007900    OTG06758.1    ABLF02042030    GBHO01012744    JAG30860.1    GDIP01209409    JAJ13993.1    GAMC01008189    JAB98366.1    NEVH01006980    PNF36330.1    NEVH01002725    PNF41351.1    GDUN01000696    JAN95223.1    GDUN01000697    JAN95222.1    NEVH01006721    PNF37230.1    FJ238509    ACI62137.1    D83003    BAA11674.1    ABLF02041793    JXUM01099923    KQ564528    KXJ72133.1    LXQA010000987    MCH80374.1    AC133339    DP000009    AAP46257.1    ABF99717.1    GEHC01000966    JAV46679.1   

Proteomes

UP000243006    UP000054924    UP000054843    UP000054776    UP000054826    UP000046395    + More
UP000054632    UP000054673    UP000007819    UP000007266    UP000036403    UP000007879    UP000002358    UP000054630    UP000235965    UP000069940    UP000249989    UP000236291    UP000075243    UP000053240    UP000218220    UP000054721    UP000215914    UP000005238   

PRIDE

B3Y003   

Pfam

PF13976   gag_pre-integrs        + More
PF07727   RVT_2
PF00665   rve
PF00098   zf-CCHC
PF13961   DUF4219

Interpro

IPR025724   GAG-pre-integrase_dom        + More
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR012337   RNaseH-like_sf       
IPR013103   RVT_2       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR025314   DUF4219       
IPR011009   Kinase-like_dom_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF56112   SSF56112       

Gene 3D

3.30.420.10    

ProteinModelPortal

B3Y003   A0A1Y1K1E5   A0A1Y1KNM9   A0A1Y3EJI6   A0A085MW59   A0A0V1NHV8   + More
A0A0V1M1K0   A0A0V1B5K0   A0A0V1B5A2   A0A0V1K2T2   A0A0A9YL44   A0A1Y3E8D5   A0A0N5E2R3   A0A0V1IPN2   A0A0V1DTZ3   A0A085NBE7   A0A0V0WRK3   A0A085MSN1   A0A085NBL2   J9LCG1   A0A085N6E0   A0A1Y1LDU4   A0A139WFV5   A0A0J7K744   A0A1Y1KR09   A0A1Y1K5W6   A0A1Y1JZX1   A0A1X7U495   X1WMK8   A0A0A9YB53   A0A0A9W6P7   A0A0P6AI73   A0A0J7K9W0   A0A0J7K725   A0A0P5D6G1   A0A0P5AJS8   A0A0P5DII6   A0A2M4CWP1   A0A2M3YZL7   K7JBX1   A0A0J7KRG1   A0A2M4CV35   A0A2M3YZL3   A0A0J7KNZ2   A0A0V0RE76   A0A0J7KBA1   A0A0N7ZJE6   A0A2J7QWT7   A0A182GSW5   A0A2K3NXK0   A0A0J7KM48   A0A1W7R6A3   A0A0J7KDE2   A0A151R7U0   A0A1Y1NHZ0   A0A0V1NED0   A0A0P6B8Y5   A0A2K3MYT4   A0A0P6APU8   A0A1W7R6C3   A0A194RU38   A0A1W7R6J6   A0A2A4JRI1   A0A1W7R6K6   A0A182G1G7   A0A2Z6N0G5   A0A2K3MZ63   A0A0V1L945   A0A1Y1LCN3   A0A1J3CK86   A0A251UIF2   A0A182GA29   A0A2J7Q1Z2   A0A1W7R6D9   H3H839   A0A251T6N3   X1XQX4   A0A0A9YMV4   A0A0N7ZV66   W8BYI7   A0A2J7R668   A0A2J7RKJ6   A0A0P6JS54   A0A0P6IW88   A0A2J7R8S8   B6V6Z8   Q9ZRJ0   J9KJ72   A0A182GZN1   A0A392M193   Q7Y141   A0A1W7R685  

PDB

3S3O     E-value=0.00101518,     Score=103

KEGG

105841853    no KO assigned | (RefSeq) uncharacterized LOC105841853

GO

GO:0003676   GO:0015074   GO:0000943   GO:0008270   GO:0019001   GO:0031683   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

PANTHER

PTHR11439  

Length:

709

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0013

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00012

outside

1  -  709

 

 

Pi

0.609524

Theta

3.289592

Tajima's D

-2.150013

CLR

3031.601711

CSRT

0.00499975001249937

Interpretation

Possibly Positive selection